mRNA_P-littoralis_Contig1325.1.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.780e-36 Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 1
Query: 238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
PELQ +E+ ++ G G QSI VTL PQ GKR+LTAW W+ +SRF+P+INDKNVVCLVK +G C HL+KW+ S + QRGSGTTGL KH+EKFHP + KEE GT+ ERK I+AA+
Sbjct: 47 PELQSSSESRTMVNAGRG-QSISVTLMEPQYGKRRLTAWCWQVMSRFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSEGK-QRGSGTTGLTKHIEKFHPTTAQKIKEEEGTQAERKESIQAAI 167
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.080e-34 Identity = 64/129 (49.61%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVGESYYI 624
P LQ P E+ A+I G GK +++VTL+ P EGKR+LT+W W F SRFSP+IN KNVVCLVK +G CG L+KW + ++G+GT+G++KHLE H + V K + G E+ API AA+GE ++
Sbjct: 40 PVLQVPPESEASIDVGKGK-TVKVTLKEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAALGEFFFF 166
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 9.200e-32 Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVGESYYI 624
P LQ P E+ A+I G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK +G CG L+KW + ++G+GT+G++KHLE H + V K + G E+ API AA+GE ++
Sbjct: 40 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAALGEFFFF 166
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.010e-31 Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVGESYYI 624
P LQ P E+ A+I G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK +G CG L+KW + ++G+GT+G++KHLE H + V K + G E+ API AA+GE ++
Sbjct: 1124 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAALGEFFFF 1250
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.820e-27 Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 211 QPVADSDSHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTA-WVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLL-KWSSSTTQAQ-----RGSGTTGLAKHLEKFHPAVV 543
+PVA+S P LQ P ET A++ G GK ++QVTLE P EGKR LT+ W W F SRFSP IN KNVVC+ K +G C HL+ KW + T A +GSGT+G++KHLE H V
Sbjct: 35 EPVAES--VPVLQSPPETQASVDAGNGK-TVQVTLEEPVEGKRMLTSSWTWHFASRFSPPINGKNVVCMAKKADGTTCKHLIMKWEGAATAAVTGKRGKGSGTSGISKHLETAHKVEV 149
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.580e-19 Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 373 RFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVGESYYI 624
RF+P+INDKNVVCLVK +G C HL+KW+ S + QRG+GT+ L+KH+ K HPA K ++E GT +RK PIRAA+ +I
Sbjct: 211 RFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSESNKQRGTGTSWLSKHIAKAHPATAKTRRDE-GTPADRKEPIRAAIVHGRFI 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1325.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1325.1.1 >prot_P-littoralis_Contig1325.1.1 ID=prot_P-littoralis_Contig1325.1.1|Name=mRNA_P-littoralis_Contig1325.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp MCRQARRAACATRHTCPARRVRVVCLAMSASDPSVSATPSGEEAASADSSback to top mRNA from alignment at P-littoralis_Contig1325:32736..33365+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1325.1.1 ID=mRNA_P-littoralis_Contig1325.1.1|Name=mRNA_P-littoralis_Contig1325.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig1325:32736..33365+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1325:32736..33365+ >mRNA_P-littoralis_Contig1325.1.1 ID=mRNA_P-littoralis_Contig1325.1.1|Name=mRNA_P-littoralis_Contig1325.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig1325:32736..33365+ (Pylaiella littoralis U1_48)back to top |