mRNA_P-littoralis_Contig132.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.91.1
Unique NamemRNA_P-littoralis_Contig132.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5L8Z0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.260e-33
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            MCT ++KAIL GRH+  HDI GAQWAKS+GT R VI+  A+ G+WAT S ++HRE F+A+ V D+ +L ++A CAA P DNCDFDPR+G  QGE
Sbjct:  682 MCTVVVKAILRGRHMGSHDIKGAQWAKSKGTCRDVINFVAEYGLWATTSQIQHREDFHARFVEDKDLLSRDAECAAIPLDNCDFDPRVGVGQGE 775          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.710e-33
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            MCT ++KAIL GRH+  HDI GAQWAKS+GT R VI+  A+ G+WAT S ++HRE F+A+ V D+ +L ++A CAA P DNCDFDPR+G  QGE
Sbjct:  682 MCTVVVKAILRGRHMGSHDIKGAQWAKSKGTCRDVINFVAEYGLWATTSQIQHREDFHARFVEDKDLLSRDAECAAIPLDNCDFDPRVGVGQGE 775          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5JR31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR31_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.770e-31
Identity = 57/94 (60.64%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            MCT + KA+L  R+ A H I  AQWAKS+GT R V+D CA  GMWAT S V HRE FNAK V D H+L K+ATC AFPFDNCD  P +G  Q E
Sbjct:  333 MCTGVAKAVLGTRYRASHHIKAAQWAKSKGTPRVVVDFCAAHGMWATDSQVRHREDFNAKVVEDGHMLPKDATCGAFPFDNCDMKPVVGVSQRE 426          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5KSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.700e-30
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            MCT ++ AIL GR++  HDI GAQWAKS+GT R+V +  A+ G+WAT S ++HRE ++A+ V D+ +L ++A CAA P DNCDFDPR+G  QGE
Sbjct:  420 MCTVVVTAILRGRYMGSHDIKGAQWAKSKGTCREVTNFVAEHGLWATTSQIQHREDYHARFVEDKDLLSQDAECAAIPLDNCDFDPRVGVGQGE 513          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5L193_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L193_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.940e-30
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            +C   +KAI  GRHL   DI GAQWAKS+GT RQVID  A  G+WAT S V+HRE ++AK V D+ IL K A CAA   DNCD DPR+GERQG+
Sbjct:  531 LCKCTVKAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAAIANDNCDNDPRVGERQGK 624          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.770e-29
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            +C   +KAI  GRHL   DI GAQWAKS+GT RQVID  A  G+WAT S V+HRE ++AK V D+ IL K A CA    DN D DPR+GERQGE
Sbjct:   76 LCKCAVKAIFLGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAEIASDNSDHDPRVGERQGE 169          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5JUI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.730e-29
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            +C   +KAI  GRHL   DI GAQWAKS+GT RQVID  A  G+WAT S V+HRE + AK V D+  L K   CAA   DNCD DPR+GERQ E
Sbjct:  253 LCKCTVKAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYRAKVVEDKDTLPKGDQCAAIANDNCDHDPRVGERQWE 346          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5JM20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM20_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.470e-28
Identity = 58/104 (55.77%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIG----------ERQGE 282
            +C   +KAI  GRHL   DI GAQWAKS+GT RQVID  A  G+WAT S V+HRE ++AK V D+ IL K A CAA   DNCD DPR+G          ERQGE
Sbjct:  531 LCKCTVKAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSPVQHREDYHAKVVEDKDILPKGAQCAAIANDNCDHDPRVGAXXXXXXXXXERQGE 634          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5KBR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.100e-27
Identity = 54/94 (57.45%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            +C   +KA+  GR L   DI GAQWAKS+GT RQ ID  A  G WAT S V+HRE ++A  V D+ IL K A CAA   DNCD DPR+GERQGE
Sbjct:  516 LCKCTVKAVFPGRDLTAADIKGAQWAKSKGTCRQDIDFVAGHGWWATTSQVQHREDYHANVVEDKDILPKGAQCAAIANDNCDHDPRVGERQGE 609          
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Match: A0A6H5JDT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.010e-24
Identity = 49/80 (61.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   43 LACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASSVEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE 282
            +A H I  AQWAKS+GT R V+D CA  GMWAT   V HRE FNAK V D   L K+ATC AFPFDNCD  P +G  QGE
Sbjct:    1 MASHHIKAAQWAKSKGTPRVVVDFCAAHGMWATDRQVRHREDFNAKVVEDGDKLPKDATCGAFPFDNCDMKPVVGVSQGE 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L8Z0_9PHAE8.260e-3359.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE8.710e-3359.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR31_9PHAE4.770e-3160.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG4_9PHAE1.700e-3055.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L193_9PHAE2.940e-3060.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE3.770e-2959.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUI8_9PHAE8.730e-2958.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM20_9PHAE4.470e-2855.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBR1_9PHAE1.100e-2757.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDT2_9PHAE1.010e-2461.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:427331..427612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size282
Hectar predicted targeting categoryother localisation
Exons1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789605.9002204-CDS-P-littoralis_Contig132:427330..4276121680789605.9002204-CDS-P-littoralis_Contig132:427330..427612Pylaiella littoralis U1_48CDSP-littoralis_Contig132 427331..427612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.91.1prot_P-littoralis_Contig132.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 427331..427612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.91.1

>prot_P-littoralis_Contig132.91.1 ID=prot_P-littoralis_Contig132.91.1|Name=mRNA_P-littoralis_Contig132.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MCTSILKAILAGRHLACHDIIGAQWAKSRGTSRQVIDHCAKQGMWATASS
VEHRESFNAKAVGDEHILRKNATCAAFPFDNCDFDPRIGERQGE
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mRNA from alignment at P-littoralis_Contig132:427331..427612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.91.1 ID=mRNA_P-littoralis_Contig132.91.1|Name=mRNA_P-littoralis_Contig132.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig132:427331..427612+ (Pylaiella littoralis U1_48)
ATGTGTACATCGATTTTGAAAGCCATCCTGGCTGGCCGGCATTTGGCTTG TCACGATATCATAGGGGCTCAATGGGCAAAGTCGAGGGGTACCAGTCGCC AGGTTATCGACCATTGTGCCAAGCAAGGCATGTGGGCCACGGCCTCGAGC GTAGAACACCGAGAAAGTTTTAATGCCAAAGCAGTAGGGGATGAGCACAT TCTTCGCAAGAATGCCACCTGCGCCGCGTTTCCTTTCGACAACTGTGATT TCGACCCAAGAATCGGTGAACGCCAAGGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:427331..427612+

>mRNA_P-littoralis_Contig132.91.1 ID=mRNA_P-littoralis_Contig132.91.1|Name=mRNA_P-littoralis_Contig132.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig132:427331..427612+ (Pylaiella littoralis U1_48)
ATGTGTACATCGATTTTGAAAGCCATCCTGGCTGGCCGGCATTTGGCTTG
TCACGATATCATAGGGGCTCAATGGGCAAAGTCGAGGGGTACCAGTCGCC
AGGTTATCGACCATTGTGCCAAGCAAGGCATGTGGGCCACGGCCTCGAGC
GTAGAACACCGAGAAAGTTTTAATGCCAAAGCAGTAGGGGATGAGCACAT
TCTTCGCAAGAATGCCACCTGCGCCGCGTTTCCTTTCGACAACTGTGATT
TCGACCCAAGAATCGGTGAACGCCAAGGGGAG
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