mRNA_P-littoralis_Contig132.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.59.1
Unique NamemRNA_P-littoralis_Contig132.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 4.160e-71
Identity = 158/288 (54.86%), Postives = 176/288 (61.11%), Query Frame = 1
Query:  229 AKVAKQARKRKAAGPKRVNRTQLSQWLTEPVLPCLDKFIQHNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFR----------------------------KKNRRNKMKRLRQHYDLDHVFDPLDIDVKLGKTKVRLEGGTIQKVESFRSGRYILEDGTMIGQWELLSTRYGKGVTLEQDVARYIRQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDPVSNLPLDDLEAIKNKTERVRQLSLEIFTNASVQDLLP 1008
            AKVAKQ RK+KAAG KRV   +L++WLTEPVLPCLDKFI+ NRKLA +R K+HEGSA  TPGKPAGVG + DLAGPLSLLSKSKEGGFR                            +KNR +K KRLR HYDLD+VFDP+     +G  K    G T ++           ED                                ATHTTTLSQIVPYISGGD TM+DGMLLDVDGG E A AT DKID  S L L +L+AIK KTERVRQLSLEIF  ASVQDLLP
Sbjct:  583 AKVAKQGRKQKAAGQKRVTGPKLARWLTEPVLPCLDKFIRTNRKLAKQRGKDHEGSAGHTPGKPAGVGYITDLAGPLSLLSKSKEGGFRVFKDTFFPRANINLLSLSEDDVKNLRGEEKNRWSKTKRLRAHYDLDYVFDPVGHRCGVGADK----GSTRRR-----------EDPE-----------------------------GATHTTTLSQIVPYISGGDKTMSDGMLLDVDGGIEGAVATVDKIDSKSKLSLVNLQAIKTKTERVRQLSLEIFAKASVQDLLP 826          
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 179 bits (453), Expect = 1.010e-49
Identity = 108/261 (41.38%), Postives = 156/261 (59.77%), Query Frame = 1
Query:  241 KQARKRKAAGPKRVNRTQLSQWLTEPVLPCLDKFIQHNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRKKNR----RNKMKRLRQHYDLDHVFDPLDIDVKLGKTKVRLEGGTIQKVESFRSGRYILEDG-TMIGQWELLSTRYGKGVTLEQDVARYIRQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDPVSNLPLDDLEAIKNKTERVRQLSLEIFTNASVQDLLP 1008
            K AR  K  G + +  T L+Q L EP+L C++ F+++NR+ + E  +    +A + P KPAG G++AD A  L++LS  K+     K      R+    ++  Y+LD+ FDP DI V++G+T V   G  +Q VE+F  G Y L D  + + QW++L  R+G+GVTLEQD+ RYI QL  T+    S  VP I   D  + DGM+LDV GG   A  + D ID +S L  ++L  IK  T+RVR  +LEIFT +SV+D+LP
Sbjct:   84 KTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTW-GNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342          
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.410e-46
Identity = 109/261 (41.76%), Postives = 156/261 (59.77%), Query Frame = 1
Query:  241 KQARKRKAAGPKRVNRTQLSQWLTEPVLPCLDKFIQHNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRKKNR----RNKMKRLRQHYDLDHVFDPLDIDVKLGKTKVRLEGGTIQKVESFRSGRYILEDGTM-IGQWELLSTRYGKGVTLEQDVARYIRQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDPVSNLPLDDLEAIKNKTERVRQLSLEIFTNASVQDLLP 1008
            K AR  K  G + +  T L+Q L EP+LPC++ F+++NR+ + E  +    +A +T  KPAG G++AD A  L++LS  K+ G   K      R+ +  ++  Y+LD+ F+P  I V++GKT V  +G  +QKVE+F  G Y L D    + QW++L  R G GVTLEQD+ RYI QL  T+    S  VP I   D  + DGM+LDVDG   RA    D ID  S L  + L  IK  T++VR  +L+IFT++SV+D+LP
Sbjct:  634 KTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSHIGVEVGKTTVMWKG-KVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILP 892          
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.830e-22
Identity = 76/210 (36.19%), Postives = 120/210 (57.14%), Query Frame = 1
Query:  382 NHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRKKNRRNKMKRLRQHYDLDHVFDPLDIDVKLGKTKVRLEGGTIQKVESFRSGRYILEDGTMIGQWELLSTRYGKGVTLEQDVARYIRQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDPVSN-LPLDDLEAIKNKTERVRQLSLEIFTNASVQDLLP 1008
            NH  SA+   G+ A  G + D + P SL    K G      +R+++  L+ ++D +++F+P  I+V +G T+V+++G  I  VESF  G+Y L     I QWELL  R G+G TL+ ++ R+I Q A  +   +++ VPY        T+GML ++    ERA A  D ID  SN + L++L +++   E++R LSLEIFT   + + LP
Sbjct:  177 NHLASAQ---GQVADRG-LCDASAPNSLKLNDKVGF-----KRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDG-RIFVVESFDHGKYNLAGHKPITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIA-TEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375          
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.760e-17
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  244 QARKRKAAGPKRVNRTQLSQWLTEPVLPCLDKFIQHNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPL 459
            Q R+R+A G  RV+ T+L +WLTEP LPC++ FIQ NRK+A ERAK+HEG+A  TP +P GVG++ADLA PL
Sbjct:  553 QLRQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624          
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.330e-15
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  505 RRNKMKRLRQHYDLDHVFDPLDIDVKLG------KTKVRLEGGTIQKVESFRSGRYILEDGTMIGQWELLSTRYGKGVTLEQDVARYIRQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVD 852
            RR+K+  L   +   ++F+P  I V L       +TKV + GG    V+SF +G+Y LEDGT IGQWELL TR G GVTL+ +  R++R L AT+T  +++ VP+   G   M+ GML +VD
Sbjct:  291 RRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEI-GGRELVVKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGN-MSGGMLWNVD 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L612_9PHAE4.160e-7154.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0000161E591.010e-4941.38hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE7.410e-4641.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE1.830e-2236.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA9_ECTSI1.760e-1761.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ65_ECTSI2.330e-1543.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:226805..227895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHJ0
Model size1008
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-11
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.3074706-CDS-P-littoralis_Contig132:226804..2273171680789604.3074706-CDS-P-littoralis_Contig132:226804..227317Pylaiella littoralis U1_48CDSP-littoralis_Contig132 226805..227317 -
1680789604.3180993-CDS-P-littoralis_Contig132:227400..2278951680789604.3180993-CDS-P-littoralis_Contig132:227400..227895Pylaiella littoralis U1_48CDSP-littoralis_Contig132 227401..227895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.59.1prot_P-littoralis_Contig132.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 226805..227895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.59.1

>prot_P-littoralis_Contig132.59.1 ID=prot_P-littoralis_Contig132.59.1|Name=mRNA_P-littoralis_Contig132.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=336bp
DSDGDNDSEGGGAGGGGGSGSNVSDIEGGSAGGDSGSGSGSDSGSDSGSG
SGSDSGSDSDSGSDSGSDSGGGGGGGAKVAKQARKRKAAGPKRVNRTQLS
QWLTEPVLPCLDKFIQHNRKLAAERAKNHEGSARQTPGKPAGVGSVADLA
GPLSLLSKSKEGGFRKKNRRNKMKRLRQHYDLDHVFDPLDIDVKLGKTKV
RLEGGTIQKVESFRSGRYILEDGTMIGQWELLSTRYGKGVTLEQDVARYI
RQLAATHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDPV
SNLPLDDLEAIKNKTERVRQLSLEIFTNASVQDLLP
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mRNA from alignment at P-littoralis_Contig132:226805..227895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.59.1 ID=mRNA_P-littoralis_Contig132.59.1|Name=mRNA_P-littoralis_Contig132.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1091bp|location=Sequence derived from alignment at P-littoralis_Contig132:226805..227895- (Pylaiella littoralis U1_48)
GACAGCGACGGCGATAACGACAGTGAGGGGGGCGGTGCCGGGGGTGGCGG CGGCAGCGGAAGCAACGTCAGCGACATAGAAGGGGGCAGTGCCGGTGGTG ACAGCGGCAGCGGCAGCGGCAGCGACAGCGGCAGCGACAGTGGCAGCGGC AGCGGCAGCGACAGCGGCAGCGACAGCGACAGCGGCAGCGACAGCGGCAG CGACAGTGGTGGCGGTGGCGGTGGCGGTGCGAAAGTTGCCAAGCAAGCAC GAAAGCGTAAGGCAGCTGGGCCAAAGAGAGTAAACCGCACGCAACTTAGT CAATGGCTGACGGAACCGGTCCTGCCCTGCTTGGACAAATTCATCCAACA CAATCGCAAGCTCGCCGCTGAGCGAGCAAAAAACCACGAGGGTTCGGCAC GTCAGACACCGGGGAAGCCTGCCGGAGTGGGGTCGGTCGCGGATCTTGCC GGTCCCCTTTCTCTCCTGTCGAAGAGCAAGGAAGGTGGATTTCGAGTATT CAAGGACATTTCTTCCCGCGATCCAACATAGACCTGCTCTCGCTGAGTGG GAACGATGTCAAAAATCTGTGGGGGGAGAAGAAAAACCGTCGGAACAAGA TGAAGCGACTCCGGCAACACTACGACTTGGACCACGTCTTTGATCCTTTG GACATCGATGTGAAGTTGGGGAAGACAAAGGTTCGGCTCGAAGGCGGGAC CATCCAGAAGGTGGAGAGTTTCAGGAGCGGTCGGTACATTCTGGAAGACG GAACGATGATCGGTCAATGGGAGCTTTTGTCCACGCGATACGGGAAAGGC GTGACGCTAGAGCAGGACGTCGCGCGGTACATTCGACAACTGGCCGCCAC GCACACCACCACCCTGAGTCAAATCGTGCCGTACATCTCGGGGGGTGACA CGACAATGACTGATGGGATGCTGCTGGACGTCGACGGTGGTACGGAACGT GCGGCAGCCACCGGTGACAAGATAGACCCCGTGAGCAACCTACCGCTGGA TGATCTCGAGGCAATAAAGAACAAGACGGAAAGGGTCAGGCAGCTTTCTC TTGAAATCTTTACCAATGCCAGCGTACAAGACCTCTTGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:226805..227895-

>mRNA_P-littoralis_Contig132.59.1 ID=mRNA_P-littoralis_Contig132.59.1|Name=mRNA_P-littoralis_Contig132.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1008bp|location=Sequence derived from alignment at P-littoralis_Contig132:226805..227895- (Pylaiella littoralis U1_48)
GACAGCGACGGCGATAACGACAGTGAGGGGGGCGGTGCCGGGGGTGGCGG
CGGCAGCGGAAGCAACGTCAGCGACATAGAAGGGGGCAGTGCCGGTGGTG
ACAGCGGCAGCGGCAGCGGCAGCGACAGCGGCAGCGACAGTGGCAGCGGC
AGCGGCAGCGACAGCGGCAGCGACAGCGACAGCGGCAGCGACAGCGGCAG
CGACAGTGGTGGCGGTGGCGGTGGCGGTGCGAAAGTTGCCAAGCAAGCAC
GAAAGCGTAAGGCAGCTGGGCCAAAGAGAGTAAACCGCACGCAACTTAGT
CAATGGCTGACGGAACCGGTCCTGCCCTGCTTGGACAAATTCATCCAACA
CAATCGCAAGCTCGCCGCTGAGCGAGCAAAAAACCACGAGGGTTCGGCAC
GTCAGACACCGGGGAAGCCTGCCGGAGTGGGGTCGGTCGCGGATCTTGCC
GGTCCCCTTTCTCTCCTGTCGAAGAGCAAGGAAGGTGGATTTCGAAAGAA
AAACCGTCGGAACAAGATGAAGCGACTCCGGCAACACTACGACTTGGACC
ACGTCTTTGATCCTTTGGACATCGATGTGAAGTTGGGGAAGACAAAGGTT
CGGCTCGAAGGCGGGACCATCCAGAAGGTGGAGAGTTTCAGGAGCGGTCG
GTACATTCTGGAAGACGGAACGATGATCGGTCAATGGGAGCTTTTGTCCA
CGCGATACGGGAAAGGCGTGACGCTAGAGCAGGACGTCGCGCGGTACATT
CGACAACTGGCCGCCACGCACACCACCACCCTGAGTCAAATCGTGCCGTA
CATCTCGGGGGGTGACACGACAATGACTGATGGGATGCTGCTGGACGTCG
ACGGTGGTACGGAACGTGCGGCAGCCACCGGTGACAAGATAGACCCCGTG
AGCAACCTACCGCTGGATGATCTCGAGGCAATAAAGAACAAGACGGAAAG
GGTCAGGCAGCTTTCTCTTGAAATCTTTACCAATGCCAGCGTACAAGACC
TCTTGCCC
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