mRNA_P-littoralis_Contig132.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.40.1
Unique NamemRNA_P-littoralis_Contig132.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig132.40.1 vs. uniprot
Match: A0A6H5JB67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB67_9PHAE)

HSP 1 Score: 520 bits (1338), Expect = 3.020e-172
Identity = 326/574 (56.79%), Postives = 369/574 (64.29%), Query Frame = 1 
Query:   82 RRGM--ESRRKAATAAAERDILQQQSHGLQLEVKRAMRVASSTFREGDRVESRWRRPTRLDKPRLDPDGWHLGRVVQSHKDRSRVDVLFEDGDRERLSGIPAKYVRLAPSSSFLRRPLLSDSGVHDD----AGDESHDSSSSAPP---PTPMPTELLCPASCRELAYIAAVNKSLRLTWEDAVPIGQELERLRMLREKKMLDRPEWQGSFPLVDFQVTKRLSLGAGGMAG--VRTRSGTGREAAAA--AARDYR-RARHQVQDTTRGRFKT-QSRTSXXXXXXXXXXXXXLAIPRT-STVQKKRGEDKHEHSGGH--QGDIGKPAENDVSVIGMSSTSSMIMSGTASLPSSASLPSSS-----VALVKAQSKLVAAAMAYDRCVTEVIDCLDRGATTFRAARTYSEQQKAFEESTAKLGPAQPARAGYTDWRGSRVVGLQNATLDVVEAMDAWAVEWAAARDGGFGAVHAGGMNSKDGVGGNKSIAIEGEVEGRKDGVAAVVAVTAPPFLWEGMPLVSTIIGHSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRNALVRAWVNGE 1734
            RRG+  +SR KA  AA  ++ L+QQS GL LE+KRAM+VA++TFREGDRVESRWRRPTRLDK ++DP  WH GRVVQSHK   RVDV+FEDGD ERLSGI  K+VRLAP         L  SG  DD    AG     +S    P   PTP PTEL+C A  RELA+IA   KSLR TWE  VPI QE+ RLRML E+KM  RPEW+GSFPLVDF  TKRL  GAGGMA   VR    T   A +A  A RD++ +A+  V+D +R R +T QS  S             L +P T   VQ+   +D+    G      D     E +    G   +S                          AL+ AQ+KLV+AA+AYDRCV  V DCLDRG   FR ARTYSEQQKAFEESTA LGPAQPARAGY DWRGS VVGLQ+ATLDVVEAMD WA EWA A+ G             D  GG+ + A EG V   KDG    VAV APPFLWEG PLVST+IG SAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPR+ALVRAWVNGE
Sbjct:  226 RRGVSAKSRLKAMAAARHQETLEQQSQGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKGGDRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXLVSSGRDDDYVTAAGVTGRRNSCDRRPSCAPTPAPTELVCSAIRRELAHIACATKSLRCTWEVPVPISQEMARLRMLEERKMRSRPEWRGSFPLVDFSATKRLPFGAGGMARTVVRKVKNTAASAVSAVLATRDHQLQAQSTVRDDSRTRLRTVQSSPSSS-----------LKMPMTVPQVQRDENDDRDLGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXXXXXXXXXXTALLAAQAKLVSAAVAYDRCVAGVRDCLDRGCAAFRLARTYSEQQKAFEESTATLGPAQPARAGYKDWRGSPVVGLQSATLDVVEAMDDWAAEWAVAKGG-----------KTDAGGGDNAFAEEGVV--LKDGAVEEVAVAAPPFLWEGSPLVSTVIGQSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGE 775
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BLAST of mRNA_P-littoralis_Contig132.40.1 vs. uniprot
Match: D8LCG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG8_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 2.720e-165
Identity = 314/567 (55.38%), Postives = 355/567 (62.61%), Query Frame = 1 
Query:   82 RRGMES--RRKAATAAAERDILQQQSHGLQLEVKRAMRVASSTFREGDRVESRWRRPTRLDKPRLDPDGWHLGRVVQSHKDRSRVDVLFEDGDRERLSGIPAKYVRLAPSSSFLRRPLLSDSGVHDD----AGDESHDSSSSAPP---PTPMPT-ELLCPASCRELAYIAAVNKSLRLTWEDAVPIGQELERLRMLREKKMLDRPEWQGSFPLVDFQVTKRLSLGAGGMA---GVRTRSGTGREAAAAAARDYRRARHQ--VQDTTRGRFKTQSRTSXXXXXXXXXXXXXLAIPRT-STVQKKRGEDKHEHSGGHQGDIGKPAENDVSVIGMSSTSSMIMSGTASLPSSASLPSSSVALVKAQSKLVAAAMAYDRCVTEVIDCLDRGATTFRAARTYSEQQKAFEESTAKLGPAQPARAGYTDWRGSRVVGLQNATLDVVEAMDAWAVEWAAARDGGFGAVHAGGMNSKDGVGGNKSIAIEGEVEGRKDGVAAVVAVTAPPFLWEGMPLVSTIIGHSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRNALVRAWVNGE 1734
            RRG+ +  R KA  AA  ++ L+QQS GL LE+KRAM+VA++TFREGDRVESRWRRPTRLDK ++DP  WH GRVVQSHKD  RVDV+FEDGD ERLSGI  K+VRLAP                      AG     +S    P   PT  PT EL+C AS  ELA+IA   K LR TWED VPI QE+ RLRML E+KM  RPEW+GSFPLVDF  TKRL  GAGGMA   G R R+     A AA A   R+ + Q  V D +R R +T                  L +P T   V ++   D+ +  G            + +        S                  + AL++AQ+KLV+AA+AYDR V    DCLDRG   FR ARTYSEQQKAFEESTA LGPAQPARAGYTDWRGS VVGLQ+ATLDVVEAMDAWA EWAA + G             D  GG  + A EG V   KDG  A VAV APPFLWEG PLVSTIIG SAKLVAGAPELK WYGPGFPIERNPFFLAYPVDDRPVTPR+ALVRAWVNGE
Sbjct:  308 RRGVSATLRLKAMAAARHQETLEQQSRGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKDGGRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXXXXXXXXXXXVMAAGVSGRRNSCDRRPSCVPTSAPTDELVCSASRGELAHIACATKFLRCTWEDPVPISQEMARLRMLEERKMRGRPEWRGSFPLVDFSATKRLPFGAGGMARTGGRRARNAAASAATAAVATRDRQLQAQGTVHDDSRTRLRTVQ----------WSPSSSLKMPTTVPQVHREENIDRDQGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXGATALLEAQAKLVSAALAYDRYVAGARDCLDRGCAAFRLARTYSEQQKAFEESTAILGPAQPARAGYTDWRGSPVVGLQSATLDVVEAMDAWAAEWAADKGG-----------KPDTGGGGNAFAEEGVV--LKDGAVAEVAVAAPPFLWEGSPLVSTIIGQSAKLVAGAPELKGWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGE 851
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB67_9PHAE3.020e-17256.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCG8_ECTSI2.720e-16555.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:147987..150262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCG8
Model size1941
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.46e-166
EggNOG OGs2CYV0@1|root,2S6K7@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005000.1
Cds size1941
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.835142-CDS-P-littoralis_Contig132:147986..1481931680789603.835142-CDS-P-littoralis_Contig132:147986..148193Pylaiella littoralis U1_48CDSP-littoralis_Contig132 147987..148193 -
1680789603.8447678-CDS-P-littoralis_Contig132:148528..1502621680789603.8447678-CDS-P-littoralis_Contig132:148528..150262Pylaiella littoralis U1_48CDSP-littoralis_Contig132 148529..150262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.40.1prot_P-littoralis_Contig132.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 147987..150262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.40.1

>prot_P-littoralis_Contig132.40.1 ID=prot_P-littoralis_Contig132.40.1|Name=mRNA_P-littoralis_Contig132.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=647bp
TASRLEGEGKRPRFRQRSPAATSKAAPRRGMESRRKAATAAAERDILQQQ
SHGLQLEVKRAMRVASSTFREGDRVESRWRRPTRLDKPRLDPDGWHLGRV
VQSHKDRSRVDVLFEDGDRERLSGIPAKYVRLAPSSSFLRRPLLSDSGVH
DDAGDESHDSSSSAPPPTPMPTELLCPASCRELAYIAAVNKSLRLTWEDA
VPIGQELERLRMLREKKMLDRPEWQGSFPLVDFQVTKRLSLGAGGMAGVR
TRSGTGREAAAAAARDYRRARHQVQDTTRGRFKTQSRTSSSSSLLLLSSS
SSLAIPRTSTVQKKRGEDKHEHSGGHQGDIGKPAENDVSVIGMSSTSSMI
MSGTASLPSSASLPSSSVALVKAQSKLVAAAMAYDRCVTEVIDCLDRGAT
TFRAARTYSEQQKAFEESTAKLGPAQPARAGYTDWRGSRVVGLQNATLDV
VEAMDAWAVEWAAARDGGFGAVHAGGMNSKDGVGGNKSIAIEGEVEGRKD
GVAAVVAVTAPPFLWEGMPLVSTIIGHSAKLVAGAPELKEWYGPGFPIER
NPFFLAYPVDDRPVTPRNALVRAWVNGETVTTVSQVLLEEREREEAALKV
ILDKQASVPSWWPTCRAAVGGEAHYERIRRAEKSIARAEWQLIKGKE
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mRNA from alignment at P-littoralis_Contig132:147987..150262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.40.1 ID=mRNA_P-littoralis_Contig132.40.1|Name=mRNA_P-littoralis_Contig132.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2276bp|location=Sequence derived from alignment at P-littoralis_Contig132:147987..150262- (Pylaiella littoralis U1_48)
ACAGCCTCCCGTTTGGAGGGAGAGGGAAAGCGGCCACGATTTAGGCAACG
AAGCCCTGCAGCAACCTCAAAGGCTGCACCACGGAGGGGCATGGAGTCAC
GTCGTAAGGCGGCGACAGCGGCGGCCGAGCGAGACATCCTCCAGCAGCAG
TCACACGGCCTACAATTGGAGGTCAAGCGCGCCATGCGGGTGGCTAGTTC
AACGTTCAGGGAAGGCGACAGAGTTGAGAGCCGCTGGCGCCGCCCCACCC
GACTGGATAAACCCCGCCTCGATCCAGACGGATGGCACCTGGGACGCGTG
GTCCAGAGTCACAAGGACCGCAGCAGGGTGGATGTGCTCTTCGAGGACGG
AGATCGTGAACGCTTGAGCGGTATTCCCGCTAAATACGTACGTCTGGCTC
CTTCCTCTTCTTTCTTGCGTCGACCTCTTCTTTCGGACTCAGGAGTCCAC
GACGACGCGGGGGACGAAAGCCATGATTCATCGTCGTCCGCACCCCCCCC
AACGCCCATGCCGACCGAATTGTTGTGTCCGGCAAGCTGTCGGGAGCTGG
CGTATATCGCGGCTGTGAACAAATCTTTGCGTCTCACTTGGGAGGATGCC
GTGCCCATTGGTCAGGAGCTGGAAAGACTTAGAATGCTGAGGGAAAAAAA
AATGCTCGATCGTCCGGAGTGGCAAGGGTCGTTTCCCCTTGTCGACTTCC
AGGTGACTAAACGGCTGTCGCTCGGTGCTGGCGGGATGGCCGGAGTGAGG
ACTAGGTCGGGGACGGGAAGAGAAGCGGCGGCGGCTGCGGCTCGAGATTA
CCGGAGGGCACGTCATCAAGTGCAGGACACTACTCGTGGTAGATTCAAAA
CGCAGTCGCGAACGTCGTCGTCTTCGTCCTTGTTGTTGTTGTCGTCGTCG
TCGTCGCTTGCGATTCCAAGAACGAGCACGGTACAAAAAAAGCGGGGGGA
GGACAAGCATGAGCACAGCGGGGGGCATCAAGGCGATATCGGCAAACCCG
CCGAGAACGACGTGTCGGTGATAGGGATGAGCAGCACCAGCTCGATGATC
ATGAGTGGAACCGCTTCATTACCATCGTCAGCGTCCTTGCCATCGTCTTC
AGTGGCGCTCGTGAAGGCACAGTCGAAACTCGTCGCGGCCGCTATGGCCT
ACGACAGGTGCGTGACCGAAGTGATAGACTGCCTCGACAGGGGCGCCACC
ACCTTCCGTGCAGCCCGCACGTACTCCGAGCAGCAAAAAGCGTTTGAAGA
GTCCACAGCAAAGCTGGGTCCTGCACAGCCAGCTCGAGCGGGCTACACCG
ACTGGCGCGGCAGTCGCGTGGTTGGGCTGCAAAACGCAACGCTAGACGTC
GTGGAGGCCATGGACGCTTGGGCGGTGGAGTGGGCAGCGGCCAGGGATGG
TGGATTCGGAGCCGTGCACGCCGGTGGAATGAATAGCAAAGATGGCGTTG
GAGGGAACAAGAGCATCGCCATTGAAGGAGAAGTAGAAGGACGGAAGGAC
GGGGTGGCCGCGGTCGTCGCTGTCACAGCGCCTCCATTCCTTTGGGAAGG
GATGCCACTGGTCTCCACGATTATCGGTCACAGCGCCAAGCTCGTGGCGG
GCGCGCCGGAGCTCAAGGAATGGTACGGTCCGGGGTTCCCGATAGAACGA
AACCCCTTCTTTCTCGCCTATCCGGTGGATGATCGACCGGTCACGCCTCG
CAACGCTCTCGTACGTGCTTGGGTGAATGGCGAGGTACGTGGTGGGTTGC
CTGTGGTGAGTACTACTGTAAGCACAGGCACTACCACGTGAGGTTTTGGA
TTGACGGCAAAGTTTCATTCCGCAGGGAGAATATTGACGTGAAAAATAAA
TACGTTGCTTTAGGGGGCAAGTTCGGGAGGATGGACACTGCGCACACCGC
ACCATATCGCTGCTAATTGCTGCAAGACCTACGTTTACTACAGGAAAGAA
TCACAATGGCAACACGCCGGAATGGTTTAATGCGCCACAAGCAAGCTGCA
CGCGTCTCGCCGTCGGTTCTCATCGACCACTTACTGGTTTTTAACTTTGC
TTCTCTTGACTTGAATCAGACGGTGACAACTGTAAGCCAAGTGTTGTTGG
AAGAGAGAGAGAGGGAGGAAGCGGCTCTAAAAGTCATCCTCGACAAGCAG
GCGTCCGTCCCCTCCTGGTGGCCCACCTGTCGAGCGGCGGTAGGGGGCGA
GGCGCACTACGAAAGAATACGACGGGCGGAGAAAAGTATCGCTCGGGCAG
AGTGGCAACTCATCAAGGGCAAGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:147987..150262-

>mRNA_P-littoralis_Contig132.40.1 ID=mRNA_P-littoralis_Contig132.40.1|Name=mRNA_P-littoralis_Contig132.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1941bp|location=Sequence derived from alignment at P-littoralis_Contig132:147987..150262- (Pylaiella littoralis U1_48)
ACAGCCTCCCGTTTGGAGGGAGAGGGAAAGCGGCCACGATTTAGGCAACG
AAGCCCTGCAGCAACCTCAAAGGCTGCACCACGGAGGGGCATGGAGTCAC
GTCGTAAGGCGGCGACAGCGGCGGCCGAGCGAGACATCCTCCAGCAGCAG
TCACACGGCCTACAATTGGAGGTCAAGCGCGCCATGCGGGTGGCTAGTTC
AACGTTCAGGGAAGGCGACAGAGTTGAGAGCCGCTGGCGCCGCCCCACCC
GACTGGATAAACCCCGCCTCGATCCAGACGGATGGCACCTGGGACGCGTG
GTCCAGAGTCACAAGGACCGCAGCAGGGTGGATGTGCTCTTCGAGGACGG
AGATCGTGAACGCTTGAGCGGTATTCCCGCTAAATACGTACGTCTGGCTC
CTTCCTCTTCTTTCTTGCGTCGACCTCTTCTTTCGGACTCAGGAGTCCAC
GACGACGCGGGGGACGAAAGCCATGATTCATCGTCGTCCGCACCCCCCCC
AACGCCCATGCCGACCGAATTGTTGTGTCCGGCAAGCTGTCGGGAGCTGG
CGTATATCGCGGCTGTGAACAAATCTTTGCGTCTCACTTGGGAGGATGCC
GTGCCCATTGGTCAGGAGCTGGAAAGACTTAGAATGCTGAGGGAAAAAAA
AATGCTCGATCGTCCGGAGTGGCAAGGGTCGTTTCCCCTTGTCGACTTCC
AGGTGACTAAACGGCTGTCGCTCGGTGCTGGCGGGATGGCCGGAGTGAGG
ACTAGGTCGGGGACGGGAAGAGAAGCGGCGGCGGCTGCGGCTCGAGATTA
CCGGAGGGCACGTCATCAAGTGCAGGACACTACTCGTGGTAGATTCAAAA
CGCAGTCGCGAACGTCGTCGTCTTCGTCCTTGTTGTTGTTGTCGTCGTCG
TCGTCGCTTGCGATTCCAAGAACGAGCACGGTACAAAAAAAGCGGGGGGA
GGACAAGCATGAGCACAGCGGGGGGCATCAAGGCGATATCGGCAAACCCG
CCGAGAACGACGTGTCGGTGATAGGGATGAGCAGCACCAGCTCGATGATC
ATGAGTGGAACCGCTTCATTACCATCGTCAGCGTCCTTGCCATCGTCTTC
AGTGGCGCTCGTGAAGGCACAGTCGAAACTCGTCGCGGCCGCTATGGCCT
ACGACAGGTGCGTGACCGAAGTGATAGACTGCCTCGACAGGGGCGCCACC
ACCTTCCGTGCAGCCCGCACGTACTCCGAGCAGCAAAAAGCGTTTGAAGA
GTCCACAGCAAAGCTGGGTCCTGCACAGCCAGCTCGAGCGGGCTACACCG
ACTGGCGCGGCAGTCGCGTGGTTGGGCTGCAAAACGCAACGCTAGACGTC
GTGGAGGCCATGGACGCTTGGGCGGTGGAGTGGGCAGCGGCCAGGGATGG
TGGATTCGGAGCCGTGCACGCCGGTGGAATGAATAGCAAAGATGGCGTTG
GAGGGAACAAGAGCATCGCCATTGAAGGAGAAGTAGAAGGACGGAAGGAC
GGGGTGGCCGCGGTCGTCGCTGTCACAGCGCCTCCATTCCTTTGGGAAGG
GATGCCACTGGTCTCCACGATTATCGGTCACAGCGCCAAGCTCGTGGCGG
GCGCGCCGGAGCTCAAGGAATGGTACGGTCCGGGGTTCCCGATAGAACGA
AACCCCTTCTTTCTCGCCTATCCGGTGGATGATCGACCGGTCACGCCTCG
CAACGCTCTCGTACGTGCTTGGGTGAATGGCGAGACGGTGACAACTGTAA
GCCAAGTGTTGTTGGAAGAGAGAGAGAGGGAGGAAGCGGCTCTAAAAGTC
ATCCTCGACAAGCAGGCGTCCGTCCCCTCCTGGTGGCCCACCTGTCGAGC
GGCGGTAGGGGGCGAGGCGCACTACGAAAGAATACGACGGGCGGAGAAAA
GTATCGCTCGGGCAGAGTGGCAACTCATCAAGGGCAAGGAA
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