prot_P-littoralis_Contig132.39.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig132.39.1
Unique Name	prot_P-littoralis_Contig132.39.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	520

Homology

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 3.230e-105
Identity = 188/250 (75.20%), Postives = 203/250 (81.20%), Query Frame = 0

Query:   47 MASSESKNSTKPASKAKTSRSSPSLLKVVIRRLPHQMKEEEFVTALVAATADAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRGRGASADLGLINLRAAVLASDALTPSTGPVSAASSTSKDRDGGGKQSGDTSNTSAPTAAVPAAAGPTVEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAKRVRDSQRAAALGSSAHR 296
            M S+ +K S KP SKAK++RSSPSLLKVV+RRLPHQMKEEEFV AL AA +DAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDR RGA+ADL L  LRAAV ASDALTP+  P S++S          K+               A AGPTVEAAPFQKLFKQKPKRD+RVGTIEKDA YKAFC ALQS A PLPSADVQADI+ESEGKEEPKPQNALLDFL+ERGA+RVRDSQRAAALGSSA R
Sbjct:    1 MTSNVAKKSAKPPSKAKSARSSPSLLKVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSS----------KEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSASR 240

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.000e-19
Identity = 75/225 (33.33%), Postives = 110/225 (48.89%), Query Frame = 0

Query:   69 PSLLKVVIRRLPHQMKEEEFVTALVAATADAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRGRGASADLGLINLRAAVLASDALTPSTGPVSAASSTSKDRDGGGKQSGDTSNTSAPTAAVPAAAGPTVEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPK-----------PQNALLDFLKERGAKRVR 282
            P+ +K+V+RRL      E+F + +    A+A   ER  ++ ++Y++PGK+SKKRG++TG  YL ++R  G       +   AAV   DA+            T    D                   P AA P VE AP+Q++F+ KP+RD   GT E+D DY+AFC AL+     LPSADVQ D + +                  P  AL+ +++ER A R R
Sbjct:   60 PAPIKIVVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAG-------VTPAAAV---DAVAXXXXXXXXXFDTHARAD-------------------PDAARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAARAR 255

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 68.6 bits (166), Expect = 1.090e-8
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKER 276
            V+ APFQK+ ++K ++D ++GTI++D D+ AF   L      LPSADV AD KESEG E  KP  AL+ +L ER
Sbjct:  183 VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 4.770e-7
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKER 276
            V+ APFQK+ ++K +RD +VGTIEKD +Y AF   L   A  LPSAD+  D K+    E  KP  AL+ +L ER
Sbjct:  198 VDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAE--KPVAALVQYLNER 269

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: UPI001E8EB04B (Smg-4/UPF3 family-domain-containing protein n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8EB04B)

HSP 1 Score: 60.1 bits (144), Expect = 7.250e-6
Identity = 67/210 (31.90%), Postives = 96/210 (45.71%), Query Frame = 0

Query:   73 KVVIRRLPHQMKEEEFVTALVAA-TADAGMGERGGSWDLMYFTPGKMSKKRGR--VTGTAYLHIDRGRGASADLGLINLRAAVLASDALTPSTGPVSAASSTSKDRDGGGKQSGDTSNTSAPTAAVPAAAGPTVEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAK 279
            K+V+RRLP  M EEEFVT L      D G        D   F  G +SK   +    G AYLH+ R      D+  +N        DA+   T                     D  NT   T+ V     PTVE   ++K+   K + D R GTI++D +++AF   L+S A P+ + DV+A+ +ES+  +       L++FLKE+ AK
Sbjct:   67 KLVVRRLPPGMTEEEFVTILGPEWEVDKG------KVDWFDFVAGGISKDLSKPPTPGRAYLHLMR----KDDIMPLN--------DAVRSKTWE-------------------DVKNTFTNTSLV---GPPTVEFCLYKKVPGAKKRVDSRQGTIDQDPEFQAF---LESLANPVQTKDVEAEFEESDKTDAKVTSTPLVEFLKEKKAK 233

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A662YFV9_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFV9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.520e-6
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSS---ALPLPSADVQADIKESEGKEEPKPQNALLDFLKER 276
            VE APFQK+ ++K ++D +VGTI++D +Y AF   LQ     +L LPSA+  AD+ E E  E  KP   L+ +L ER
Sbjct:  147 VEFAPFQKIPREKQRKDAKVGTIDRDPEYLAFLEELQKPRDVSLSLPSAEAVADMAEGEAVE--KPVATLVKYLNER 221

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A3R7HC05_9STRA (Smg4_UPF3 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC05_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-5
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAK 279
            VE APFQK+ ++K ++D +VGTI++D +Y AF   L      LPSA+   D+ E E  E  +P  AL+ +L ER  K
Sbjct:  344 VEFAPFQKIPREKQRKDAKVGTIDRDPEYTAFLEELAKPKDKLPSAEAAVDMAEGESVE--RPVAALVKYLNERKGK 418

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A484E1H6_BRELC (Smg4_UPF3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1H6_BRELC)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-5
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKERGA 278
            VE APFQK+ ++K ++D +VGTI++D ++ AF   L +     PSA+  AD+ E E  E  KP  AL+ +L ER A
Sbjct:  165 VEFAPFQKIPREKQRKDAKVGTIDRDPEFAAFLEQLATVKDTSPSAEALADLAEGEATE--KPVAALVKYLNERKA 238

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: W2PRS1_PHYPN (Smg4_UPF3 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PRS1_PHYPN)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-5
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKER 276
            VE APFQK+ ++K ++D +VGTI++D +Y AF   L      LPSA+   DI E E  E  KP  AL+ +L ER
Sbjct:  172 VEFAPFQKVPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDIAEGETVE--KPVAALVKYLNER 243

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BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Match: A0A3M6VSA1_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSA1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.210e-5
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0

Query:  203 VEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADVQADIKESEGKEEPKPQNALLDFLKER 276
            VE APFQK+ ++K ++D +VGTI++D +Y AF   L      LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  165 VEFAPFQKIPREKQRKDAKVGTIDRDPEYVAFLNELAKPKDKLPSAEPVVDMAEGETVE--KPVAALVKYLNER 236

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig132.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
D8LCG9_ECTSI	3.230e-105	75.20	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836C7E8_9STRA	5.000e-19	33.33	Smg4_UPF3 domain-containing protein n=1 Tax=Tribon...	[more]
A0A8K1FA17_PYTOL	1.090e-8	50.00	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A2D4CDX7_PYTIN	4.770e-7	48.65	Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu...	[more]
UPI001E8EB04B	7.250e-6	31.90	Smg-4/UPF3 family-domain-containing protein n=1 Ta...	[more]
A0A662YFV9_9STRA	7.520e-6	45.45	Smg4_UPF3 domain-containing protein n=2 Tax=Nothop...	[more]
A0A3R7HC05_9STRA	1.110e-5	42.86	Smg4_UPF3 domain-containing protein n=4 Tax=Phytop...	[more]
A0A484E1H6_BRELC	1.290e-5	43.42	Smg4_UPF3 domain-containing protein n=1 Tax=Bremia...	[more]
W2PRS1_PHYPN	1.320e-5	45.95	Smg4_UPF3 domain-containing protein n=8 Tax=Phytop...	[more]
A0A3M6VSA1_9STRA	2.210e-5	44.59	Smg4_UPF3 domain-containing protein n=2 Tax=Perono...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 64..140 e-value: 6.0E-8 score: 34.9
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 72..134 e-value: 1.9E-7 score: 31.2 coord: 200..276 e-value: 8.5E-12 score: 45.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 468..493
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..519
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 388..415
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 201..490 coord: 71..133

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig132	contig	P-littoralis_Contig132:140728..146897 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig132.39.1	mRNA_P-littoralis_Contig132.39.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig132 140728..146897 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig132.39.1 ID=prot_P-littoralis_Contig132.39.1|Name=mRNA_P-littoralis_Contig132.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp
PDSTQHKPNRERSPEQGREEKRAETGKGHRREKRATYSSCCCGAWTMASS
ESKNSTKPASKAKTSRSSPSLLKVVIRRLPHQMKEEEFVTALVAATADAG
MGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRGRGASADLGLINLRA
AVLASDALTPSTGPVSAASSTSKDRDGGGKQSGDTSNTSAPTAAVPAAAG
PTVEAAPFQKLFKQKPKRDIRVGTIEKDADYKAFCTALQSSALPLPSADV
QADIKESEGKEEPKPQNALLDFLKERGAKRVRDSQRAAALGSSAHRGSGS
SRRVSSSSLGGGAGSATTAAAAKTPVSASRATSGAAASSSSSSSRPPPSP
SPSPQKSQKTSAIGTGVSVMSASYRATLAKAAAAAKTTTPTPAEQQGPSE
ASKSRSSSTKGGGGSGGGSGSRAASRGEKIAVSAAAPTPTPRILSRTVDS
RSKPAAAAAAALSATAAASSARRPTASATPSSRSGNSSGGSGDGGKRGAS
GGKSRTVGKPSGTTSRPKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR005120	UPF3_dom
IPR039722	Upf3