prot_P-littoralis_Contig1317.4.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1317.4.1
Unique Nameprot_P-littoralis_Contig1317.4.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length203
Homology
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.230e-33
Identity = 81/198 (40.91%), Postives = 105/198 (53.03%), Query Frame = 0
Query:    2 NVFAAFAPSSKPHFVGQRPTTEDINVSTAVTAILVSVL---------------LQPLTGRTDFASRTIFCRARAV--ATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADV---GKPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLLKGGHSAR 179
            +  A  AP      VG+  +T DIN+  A T  +   L               LQP  G  +   R      R V  A  P G V +DI G +  +  G++Y++ FVDS SR  + YGMR K++ L Y ++F+AD+   G   CF M NAGE TS  FV FCD   IRRE+TAP T  QNA VES +WR +KGGH+AR
Sbjct:   70 HALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSQAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNGDGPLGCFRMGNAGEFTSAAFVAFCDAAGIRREYTAPDTPNQNAIVESAIWRAMKGGHAAR 267          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.230e-21
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   90 FVDSCSRRGQVYGMRTKAELLVYVQKFIADV---GKPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLLKGGHSAR 179
            F+DS S   + YGMR K + L +VQ+F+AD+   G P CF M N GE     F +FCD   IRRE+ AP T  QNA VES++WR +K GH+AR
Sbjct:    2 FMDSASPWHRGYGMRAKNDTLKFVQRFLADMNGMGTPGCFRMDNGGEFNGSVFTSFCDAAGIRREYAAPDTPNQNAVVESVIWRAMKEGHAAR 94          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A822XUS9_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XUS9_NELNU)

HSP 1 Score: 69.7 bits (169), Expect = 2.060e-10
Identity = 47/110 (42.73%), Postives = 59/110 (53.64%), Query Frame = 0
Query:   62 ATEPLGTVLLDIAGSF-EASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKF----IADVGKP-KCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 165
            A EPL  +  ++ G   +AS GG KYMV FVD  SR   VY MR K+E L    +F    +A+VGK  +C    N GE TS  F  F   + IR + T P+T QQN   E
Sbjct:  369 AKEPLELIHSNVFGPIKQASIGGMKYMVTFVDDFSRYVWVYFMRQKSETLSKFNEFRKVAVAEVGKRIRCLRTDNGGEYTSGEFSDFLREHQIRHQFTCPNTLQQNGVAE 478          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A2I0JIL5_PUNGR (Integrase catalytic domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JIL5_PUNGR)

HSP 1 Score: 55.5 bits (132), Expect = 5.290e-6
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0
Query:   60 AVATEPLGTVLLDIAGSF-EASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 165
            A A EPL  +   + G   E S    +YM+ F+D CS+   VY M+ K+E L    +F   VG     K KC  + N GE+TS++F  +     I R+ T   + QQN   E
Sbjct:   41 ARAKEPLELIHSSVFGRVKEPSIRRMRYMMTFIDDCSKYIWVYFMKEKSETLARFMEFKEKVGAKTGKKIKCLRIDNGGEDTSQKFTDYLRQCKIWRQLTCLFSPQQNGVKE 152          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A0J7KDP1_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDP1_LASNI)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-5
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 0
Query:   63 TEPLGTVLLDIAGSFEA-SHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 165
            T  L  V  D+ G     S GGAKY++ F+D CSR GQ+Y +++K+++   +++++  +      K KC    N  E  +     F     I R  T P++ QQN   E
Sbjct:  475 TAVLDLVHTDLCGPMRIPSIGGAKYILHFIDDCSRWGQIYFLKSKSDVFQALKEYVVMIENQTGKKIKCIQSDNGKEFVNSDIDGFLKERGIVRRLTVPYSPQQNGVAE 583          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A8H8MSA8_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSA8_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 4.250e-5
Identity = 35/127 (27.56%), Postives = 58/127 (45.67%), Query Frame = 0
Query:   51 SRTIFCRARAVATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLL 172
            +R  F  + + AT PL  V  D+ G  +AS GG++Y++ F+D  SR   V+ ++TK ++    + + A +      + K       GE  S     +     I  + T P++ QQN   E     LL
Sbjct:  620 ARLPFSASSSSATTPLEVVHSDLCGPLDASVGGSRYVLSFIDGFSRMAWVFILKTKDQVFESFKHWRAYIELSSGHRVKTLRTDGGGEYISNSMAAYLADAGILHQTTCPNSSQQNGVAERFFRTLL 746          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A8H8JVR6_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVR6_9AGAM)

HSP 1 Score: 53.9 bits (128), Expect = 5.550e-5
Identity = 34/123 (27.64%), Postives = 56/123 (45.53%), Query Frame = 0
Query:   55 FCRARAVATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLL 172
            F  + + AT PL  V  D+ G  +AS GG++Y++ F+D  SR   V+ ++TK ++    + + A +      + K       GE  S     +     I  + T P++ QQN   E     LL
Sbjct:  624 FSASSSSATTPLEVVHSDLCGPLDASVGGSRYVLSFIDGFSRMAWVFILKTKDQVFESFKHWRAYIELSSGHRVKTLRTDGGGEYISNSMAAYLADAGILHQTTCPNSSQQNGVAERFFRTLL 746          
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A5BFQ9_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BFQ9_VITVI)

HSP 1 Score: 53.5 bits (127), Expect = 6.520e-5
Identity = 34/96 (35.42%), Postives = 46/96 (47.92%), Query Frame = 0
Query:   72 DIAGSFE-ASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVGKP-----KCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQN 161
            DI G     S+   +Y++ F+D CSR+  VY +  K E L   + F   V K      KCF     GE  S  F  FC  + I+R+ T  +T QQN
Sbjct:  249 DICGPITPTSNSNKRYILLFIDDCSRKSWVYFLVEKLEALNSFKAFKTMVEKETRLFVKCFRTDRRGEFNSNEFNDFCKQSGIKRQLTTAYTPQQN 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JT91_9PHAE7.230e-3340.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JK88_9PHAE5.230e-2150.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A822XUS9_NELNU2.060e-1042.73Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
A0A2I0JIL5_PUNGR5.290e-634.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7KDP1_LASNI1.270e-531.19Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A8H8MSA8_9AGAM4.250e-527.56Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A8H8JVR6_9AGAM5.550e-527.64Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A5BFQ9_VITVI6.520e-535.42Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 57..193
e-value: 1.8E-15
score: 58.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 61..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1317contigP-littoralis_Contig1317:11725..12383 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1317.4.1mRNA_P-littoralis_Contig1317.4.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1317 11442..12383 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1317.4.1 ID=prot_P-littoralis_Contig1317.4.1|Name=mRNA_P-littoralis_Contig1317.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MNVFAAFAPSSKPHFVGQRPTTEDINVSTAVTAILVSVLLQPLTGRTDFA
SRTIFCRARAVATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQV
YGMRTKAELLVYVQKFIADVGKPKCFHMHNAGENTSRRFVTFCDGNAIRR
EHTAPHTGQQNAPVESLLWRLLKGGHSARLDTRRIFPSLDFSAMEHLIFS
GCG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf