mRNA_P-littoralis_Contig1315.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1315.3.1
Unique NamemRNA_P-littoralis_Contig1315.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KXD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.920e-19
Identity = 101/309 (32.69%), Postives = 148/309 (47.90%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQS-----QRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
            SG G  +SGSED+ EK  K +LD  L AIVDAK A++ + E T++ K  + +  +A+G  AI+QGN+RCGPGAK+TSF +A+ +D IA  S        + S   S     GG+   S                            G G  R  P LGD L   M +    +LA  AG T +EA++FL +G    E++ + AVAMM V+++ +L  +R   + + Y+D+    GE   E+PG     ES +  L   Y  +   F+  +     W+  G   D     R   D     VT+ +A  LV+
Sbjct:  162 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFQEAVAADNIALGSRSGAVDGGRASGWVSPASSIGGARPASEASAXXXXXXXXXXXXXXXGLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLDARLCIQRDGDSVQQYMDR---LGEEDCELPGFDGFDESVMFKLLELYGVEKMDFH--SLPDANWFHGGWPID-----RVTPDKVLQ-VTKRVASLLVL 458          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KF37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF37_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.290e-19
Identity = 90/275 (32.73%), Postives = 135/275 (49.09%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGG---------------------------------SSGPSTPPTMGEGVLRFPALGDHLSIVMHAPLADV--LAAKAGSTPQEAEFFLESGG--ELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKF 1530
            SG G  +SGSED+ EK  K +LD  L AIVDAK A++ + E T++ K  + +  +A+G  AI+QGN+RCGPGAK+TSF +A+ ++ IA      A+A  + S R S     GG                                  SGPS          + P LG+   +V H     +  LA  AG T +EA++FL +G   E++ + AVAM  V+++ +L  +R   + +DY+D     GE  +++PG     ES +  L   Y  +   F
Sbjct:  162 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARQDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFEEAVAANNIALGSRSGAAAGGRASGRVSPASSIGGVRPASEAXXXXXXXXXXXXXXXXXXLDDDLSPAGSGPSR---------KVPPLGE---LVKHMGSLSIPTLAQSAGVTTEEADYFLNTGFTVEVQPERAVAMTTVLLDKRLSLQRDGDSVQDYMD---GLGEEDMQLPGFDRFDESVMVKLLELYGVEMMDF 421          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5K0A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-18
Identity = 82/230 (35.65%), Postives = 124/230 (53.91%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADV--LAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVD 1428
            SG G  +SGSED+ EK  K +LD  L AIVDAK A++ + E T++ K  E +  +A+G  AI+QGN+RCGPGAK+TSF +A+ +D IA      A+A  + S R S     GG+   S   T+                       G G  R  P LG+   +V H     +  LA  AG + +EA++FL +G    E++ + A+AMM V+++ +   +RG  + +D++D
Sbjct:  152 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADEAASHSAMGMWAINQGNARCGPGAKATSFEEAVAADNIALGSRSGAAAGGRASGRVSPASSIGGARPASEASTVXXXXXXXXXXXXXXXLDDDISPAGSGPSRKVPPLGE---LVKHMGSLSIPTLAQSAGVSTEEADYFLNTGFMADEVQPERAMAMMTVLLDKRHSLQRGGDSVQDFMD 378          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KRQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.930e-18
Identity = 100/309 (32.36%), Postives = 144/309 (46.60%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQS-----QRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
            SG G  +SGSEDE EK  K +LD  L AIVDAK A++ + E T + K  E +  +A+G  AI+QG +RCGPGAK+TSF +A+ +D IA  S        + S R S     GG+   S                            G G  R  P LGD L   M +    +LA  AG T +EA++FL +G    E++ + AVA M V+++ +   +R   + +D +D     GE  +++PG     ES +  L   Y  +   F   +     W+  G        ER   D     VT+ +A  LV+
Sbjct:   32 SGAGTAESGSEDEVEKNTKVQLDKVLTAIVDAKAAARHDSEETEQKKADEAASHSAMGMWAINQGKARCGPGAKATSFQEAVAADNIALGSRSGAVDGGRASGRVSPASSIGGARPASEASAXXXXXXXXXXXXXXXXLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTADEVQPERAVAKMTVLLDKRRSLQRDGDSVQDSMDD---LGEEDMQLPGFDRFDESVMFKLLEPYGVEMMDFR--SLPESNWFHSGWPI-----ERVTPDKVLQ-VTKRVARLLVL 328          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: D7G106_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G106_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.160e-15
Identity = 92/318 (28.93%), Postives = 140/318 (44.03%), Query Frame = 1
Query:  838 ASGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQSQRSDRTSRVDLAGGSSGPSTPPTMGE-------------------------GVLRFPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHV--------EIPGMSE--SALSDLCSHYSADAKKFYG-PNKEAHK--WYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVVTG 1668
            ASG GN  +   +  E    AE++  +Q+++DA+   + + +  +    A K+G   LG+ AI  GNSRCGPGA +TSFG+A  SD    +     R  R      +G  SG S+P  +G                          GV   P LG  L+ ++ AP  ++LA+K G T ++A+ FL +G    ++  D A  MM  VI G L   R   + + +V   +AA E           + PG+    +    L  HY+ D   F   P+ E ++  W V+            P D  +D +TR +A  LV  G
Sbjct:  168 ASGAGNTSADDLEGDE----AEMEKLVQSVLDARTGERADSQQEK----ARKAGHNLLGQSAIDMGNSRCGPGAAATSFGEAHASDERRMSGVIDSRG-RMPGFTPSGSGSGRSSPANIGGVVGFGSGGGSGXXXXXXXXXXXXXGGVTLTPPLGSPLANLLRAPTMEILASKVGVTREQADLFLNAGFRPDQIPHDVATRMMESVIAGYLMGLRDGKSVDRFVRDIVAADEDAYGMDPVDTSKAPGLDRRGNLTHALFVHYNQDYPAFRVLPHAERYRLGWPVL----------EEPSDEIFDGLTRALASRLVFDG 466          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KK82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK82_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.090e-13
Identity = 96/332 (28.92%), Postives = 139/332 (41.87%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDA--IAFASAQSQRSDRTSRVDLAGGS--------------------SGPSTPPTMGEG------------------------VLRFPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGE--------GHVEIPGMSESA--LSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALV 1659
            SG+GN      D  E    A+L+  L A+VDAK A +   +  +    A K+G   LG+ AI  GNSRCGPGA +TSFG+A  SD   +   +    R    ++ D   G                     S P+T                               V+  P LG  L+ ++ AP  + LA+KA  TP++A+ FL +G    ++  D A  MM  VI G L A RG  + E +V + I A E           ++PG+  +    + L  +Y  D   F G   +A+K+        G   E  P D  +D +TR +A  LV
Sbjct:  243 SGVGNTSGDDLDGDE----AKLEKLLIAVVDAKAAERAGSQQEK----ARKAGQNLLGQAAIDMGNSRCGPGATATSFGEAHASDERRMEGVNRTKGRMPGFTQPDSRSGXXXXXXXXXXXXXXXXXXXXRSSPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVPPLGGALANLLRAPTIERLASKANVTPEQADLFLNAGFRPDQIPYDVATRMMETVIAGYLSALRGNQSVETFVKEVIEADEDADGFQPVATTKVPGLDRAGDLTNALFVNYKQDFNAF-GILPKAYKY------RSGWLVEEGPSDKVFDGLTRALAARLV 559          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5L4P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.230e-13
Identity = 90/288 (31.25%), Postives = 134/288 (46.53%), Query Frame = 1
Query:  904 LDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAF-----ASAQSQRSDRTSRVDLAGGSSGPSTPPTM-----------------------GEGVLR-FPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMS---ESALSDLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVV 1662
             D  L AIVDAK A++ + E T++ K  + +  +A+G  AI+QGN+RCGP AK TSF +A+ +D IA      A+A  + S R S     GG+   S                            G G  R  P LGD L   M +    +LA  AG T +EA++FL +G    E++ + AVAMM V+++ +L  +R   + + Y+D+    GE   E+PG     ES +  L   Y  +   F+  +     W+  G   D     R   D     VT+ +A  LV+
Sbjct:    3 FDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPSAKVTSFEEAVAADNIALGSRSGAAAGGRASGRVSPASSIGGARPASEXXXXXXXXXXXXXXXXXXXLDDDFSPAGSGPSRKVPPLGD-LVKHMGSLTIPMLAESAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLDARLCIQRDGDSVQQYMDR---LGEEDCELPGFDGFDESVMFKLLELYGVEKMDFH--SLPDANWFHGGWPID-----RVTPDKVLQ-VTKRVASLLVL 278          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: D7FL52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL52_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.780e-13
Identity = 94/319 (29.47%), Postives = 136/319 (42.63%), Query Frame = 1
Query:  838 ASGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFASAQSQRSDRTSRVDLAGGSSGPSTPPTMGEGVLRF--------------------------PALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESG---GELRRDSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGH--------VEIPGMSE--SALSDLCSHYSAD-AKKFYGPNKEAHK--WYVVGVRADGGKNERAPKDTEYDAVTRTIAEALVVTG 1668
            ASG GN  +   +  E    AEL+  +Q+ VD    S+  + A  + + A K+G   LG  AI  GNSRCGPGA +T+FG+A  S+    +     R  R      +G  SG S+P  +G GV  F                          P LG  L+ ++ AP  + LA+K G T ++A+ FL  G    ++  D A  MM  VI       R   + + YV   +AA E           + PG+    +    L +HY+ D A     P  E ++  W V+            P D  +D +TRT+A  LV  G
Sbjct:  157 ASGAGNTSADDLEGDE----AELEKLVQSAVD----SRAGERADSRQEKARKAGQNLLGLSAIDMGNSRCGPGAAATTFGEAHASEERRMSGVIDNRR-RMPGFTPSGSGSGRSSPANIG-GVAGFGSGSGNSSXXXXXXXXXXXXXXVTLTPPLGSTLAALLRAPTIERLASKVGVTREQADLFLNVGFRPDQIPHDVATRMMEDVIADYFMGLRDGKSVDAYVRDIVAADEDADGMDPVDTSKAPGLDRFGNLTHALFAHYNQDYASSTVLPYAERYRLGWLVL----------EGPSDEIFDGLTRTLASRLVFDG 455          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KCM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.790e-13
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESD 1095
            SG G  +SGSED+ EK  K +LD  L AIVDAK A++ + E T++ K  + +  +A+G  AI+QGN+RCGPGAK+TSF +A+ +D
Sbjct:   32 SGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFQEALAAD 116          
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Match: A0A6H5KAQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.530e-12
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  841 SGIGNEDSGSEDEPEKRMKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNSRCGPGAKSTSFGDAMESDAIAFAS 1113
            SG G  +SGSEDE EK  K +L   L AIVDAK A++ + E T++ K  E +  +A G  AI+QGN+RCGPGAK+TSF +A+ +D IA  S
Sbjct:   45 SGAGTAESGSEDEGEKNTKIQLKKVLTAIVDAKAAARQDSEETKQKKADEAAPHSATGTWAINQGNARCGPGAKATSFEEAVAADNIALGS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1315.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KXD3_9PHAE1.920e-1932.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF37_9PHAE2.290e-1932.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0A1_9PHAE1.140e-1835.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRQ2_9PHAE2.930e-1832.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G106_ECTSI1.160e-1528.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK82_9PHAE1.090e-1328.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4P2_9PHAE1.230e-1331.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL52_ECTSI3.780e-1329.47Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KCM9_9PHAE3.790e-1350.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAQ5_9PHAE2.530e-1251.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1315contigP-littoralis_Contig1315:13073..18106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2388
Hectar predicted targeting categoryother localisation
Exons5
Cds size1032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1315.3.1prot_P-littoralis_Contig1315.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1315 13538..15760 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.8612304-UTR-P-littoralis_Contig1315:13072..135371680789601.8612304-UTR-P-littoralis_Contig1315:13072..13537Pylaiella littoralis U1_48UTRP-littoralis_Contig1315 13073..13537 -
1680789601.9001591-UTR-P-littoralis_Contig1315:15760..160041680789601.9001591-UTR-P-littoralis_Contig1315:15760..16004Pylaiella littoralis U1_48UTRP-littoralis_Contig1315 15761..16004 -
1680789601.9194207-UTR-P-littoralis_Contig1315:16650..170551680789601.9194207-UTR-P-littoralis_Contig1315:16650..17055Pylaiella littoralis U1_48UTRP-littoralis_Contig1315 16651..17055 -
1680789601.928212-UTR-P-littoralis_Contig1315:17864..181061680789601.928212-UTR-P-littoralis_Contig1315:17864..18106Pylaiella littoralis U1_48UTRP-littoralis_Contig1315 17865..18106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.873512-CDS-P-littoralis_Contig1315:13537..135731680789601.873512-CDS-P-littoralis_Contig1315:13537..13573Pylaiella littoralis U1_48CDSP-littoralis_Contig1315 13538..13573 -
1680789601.881383-CDS-P-littoralis_Contig1315:13647..146281680789601.881383-CDS-P-littoralis_Contig1315:13647..14628Pylaiella littoralis U1_48CDSP-littoralis_Contig1315 13648..14628 -
1680789601.8897011-CDS-P-littoralis_Contig1315:15745..157601680789601.8897011-CDS-P-littoralis_Contig1315:15745..15760Pylaiella littoralis U1_48CDSP-littoralis_Contig1315 15746..15760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1315.3.1

>prot_P-littoralis_Contig1315.3.1 ID=prot_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=344bp
MKAELDNNLQAIVDAKCASKLNKEATRKSKDAEKSGTTALGRLAISQGNS
RCGPGAKSTSFGDAMESDAIAFASAQSQRSDRTSRVDLAGGSSGPSTPPT
MGEGVLRFPALGDHLSIVMHAPLADVLAAKAGSTPQEAEFFLESGGELRR
DSAVAMMRVVIEGKLFARRGYMTAEDYVDQHIAAGEGHVEIPGMSESALS
DLCSHYSADAKKFYGPNKEAHKWYVVGVRADGGKNERAPKDTEYDAVTRT
IAEALVVTGCEKANEASSTSDPSSAEKEATPRTVTPNSIDGAGSGAKGST
AGKGPSRETSGGDGNRGRKTRRNGQQLEVLTHFVAGPNEDDGR*
back to top

mRNA from alignment at P-littoralis_Contig1315:13073..18106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1315.3.1 ID=mRNA_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5034bp|location=Sequence derived from alignment at P-littoralis_Contig1315:13073..18106- (Pylaiella littoralis U1_48)
TTTGGAAACTGAGCTAAAGCATTACGGAAGCTTGAGCACACACACGGAGA TCAGAGGGCTAAACTTGTGCACACACTTGCACACACGCGAGGCGCACTCC GGACAGCACTCTATCGAGCTCGGCAGGAAGGGGAACACACGCTCTCGCAA AGGTCTGATACGTATTCCCGTTTATGCGTGATGTTGGTCACACAATCGCT GCCAGCAATGCTGCCAGCTGAACACTCGGCCTCGTGGAGGATGCTGTGTG TGGGTTCCCCACCTGTTATATTATTTTGATCGGATCAATGTCATCTTCCG TGCTCAGTCAAGTGTAGGTAGAACTGTCGTTCTTGATACTACTCTGTAAT GTGATGTGACGATCACACAAGGTGTATGTGCTGTTCATGTGTCTTTTTTT TCATGTGGGTATCACTCATGCAGCCACCTCGGCGGTGGTTGAGTAGTTTT TTTTTAAATACACGGACGAGTCGTACCGTTGCGAAAATTACAGGTGGTTT TCTCTTTCGTGTATGTAGCATTCACCTGGAGGGGTCAGGGCGAGAAAGAA TCAGCTAGAAACGTGGGCCCCTGGATACACAAAGAACTTGAAATATGATT GGTTTCATGTTCAGGAGGACAGGTTGACTGCTGCTGTCCATCAGGCACAA ATATAAAGAAAAACTAAAACACTGAAGTAGAAACCAAAGAAAGGTAATAT CACAGGAGGAAAGGTGTGTGCAATAAAAATAATGGAGAAGCAGTGTGCGT TGGAGCGTCACTTCTCAAATAACTGCGTTAAGCCGTGTGCGTTGCTGTCT GGTGGCGCATGATATGCCCGCTGCTTCACGGCAGTGCTGCTGCTGCTGTT GCTGCTGCAAAAACACAGCTGGTGTGCTTGTGTGTGCCTCTCATCATTTT TCACAAGGGACCCCAATAATAGACTGTTTCGGACTGGGAAATTCTTCCGG AATTAACATTTTAGATTTAGCAATAAGGAACGTACCCCCGAACGTACCCG ACAGTCCCGCCCTGTTTCTAAATATGAAAAAAATCTTGGACACGGAATTA GAGACAAGCACGATTTTGGGAGCTAAGTTCTGAGAGACTCAGGGCCGACT CGCTGCATTCAGAGACAACAGGCAACCATGGAACCAACTAGACCTAGGCA GAGTGGAAGGACTACCGTACCGAGCCAGAAGGTTCGGGAGGCCGCTAGCT CCAGCCGTTCCTCGGCGGGGTCACGGAAGTGTCGTCGTTTAGAGCTCTGG GCGACCAACACGCCAAACATGTGACAGACTTGTCGGAAGAGGACCCGCGG AGTGGAGGAAGTGATGCCGAGATCGAGAGCGCGGAGTTGCCTGTGGCGTC GACACGAAAGGTTGAGGGACAGGGCAAGCCGGTGCCCGCGGCTAAGCGCA GCAGGAAGAGCAGCAAGTGGTCTTTGGGCCAGAATTTCACTCTGGTCGCC ATGTGAGTGCCATACATACAAGTACCAGTTGCGTCATGATGTGTTTGTGC GCGCGCGCCAGCTGTGCTGCTAGCTCATGCACCAGAGAGAAGCTGTGCGC AGGCACCAGAGAAGCTGTGTGCAGGCCCAGCCCGCACAAGGTTGTGGACG AATCAGGACACTAACTAGCAGGGGCTGGTGCTGGGCTGCGTGTTGCTGCG GCTATCTTTCGTCCTCGCTGTCGTCTCCTGACGTGGTGATCAAAAACATT GAGAAGCGTTCTCAAAGTATGACACTTGGCATGATCAAAACATGAAAAAA ACACTCAAAAAATGATTGTGGAAAACATCCTGATGTACTGCTGTGAGAGA CACGAAACGGGGAGATGAATACTGCGTAGTTCGTACTTCGAAGTACTATT TTATCATACTTCGAAGTACAACACACACACAAGGGAGACAACACACACAC TTCGTATATCCCATCATACTTCGAAGTACAACACACACTTCGTAGTACCC TGTGATTATTACAATTCACAGTTGAACTCAAAATTAAACTGGGCACACAC GATTGTTACGTACTCATACAGCAGTAGATTATTTTGCTGTACGTTCACTG CTGTATTTGTTTTTTTGTTTTTTTGTTTCAATTACCCCAACCCTATTGGC AGGCCTGCATCATAGAGTCTGGTCTGTTTCTGGGGAGACTCCCGTAACTC AGAAGTGGGACGACTGCATCAGCAACCTGTCGGAGCCGCCGCACAACATC ACCTTCAAGGGTAAGACCAAGAGCCAGATGATTGCGCACTTGGACTATCT CCTGAAGGAAACTAGCAAGGCTGGCACCGACGCCAACCGAGCGCTTCTGG TATTGGGAATGAAGACAGCGGCTCCGAAGACGAGCCGGAGAAGAGAATGA AAGCTGAGCTGGTAAGGATCGCTGTAAACCTCGAAATTGAAATAAAGGCA CCCCTGTCTCAGTTTTTTTTTATTCGCTCATACACTCACACCTGCACATC ACGACCAAGTCGGTATGATTTCGAAGCAGTCCGACAAGGAAGTAACACTT CGCTTCGCTCGTGGCCTGCTTCTCAATACTAGAAAGGTTAAAGGAATTGA GAAGCAGTGTGCGTTGTAGGGCCGCTTTCCAAATAACTGCGTTAAGCCTT GTGCGTTGCTGTTTGGTGGCGTATGAGATGCCCGCTGCTTCACAGCGGTC CTGCTGCTGTGGAACAGCTGGTGGTGTGCTGATGTGCGTGTACCCGAGCA CAACGCAAACAAACGCCTCTCATCATTTGTCACAAGAAAGGGACCCCCAA AATAACGCGCTGCCGACAAGATAGCTGTGCGCACAGGACACGGGCTGCGA TGGACCCAGCAGCAGCGGGCAGATGCTATTTACCTCTTCAGTTCAAGCCC TTGGTTGTTGCGATCTGTGCTGAACTGGTGCCAAAGTGTTGCAAAACGTG GCCATTATCTCGGACACACACACAGACAGACACCGAAAACCTCCAAAATT AAATAAAGGCTCCCCCATGGCATTTGTTTTTTATTCGCACATTCACTCAC AACTACACATCACGACAAGTCGGTATGAATTCGAAGCAGTTCGACAAGGA ACTTACACTTCGCTTCGCTCGTGGCCTGCTTCTCAATAAAAACAAATTGA ACTGATTTGACCGCCAATAGCGTGCGCGAAGGAGTTGCCTCGCAATTCAT GACCGTGGTGTGATAGTGTATTCGACATTTGTTTAGACCTGTGGTGTATT GCGAGCCCACGGAGGAGGCGGCGAAGCACCTGAAAAAGAGGAAATAATAC TGATGTCTGCATGATCTGGTAGCAGGGCCAGAACACGTGTCATGGTACGC GTAATAAATGAGGGGGGCACCGTTGTTTGCATGCTGCAACCGTCCGGTGG TCACCAGTAGCAAGGGCACACCTTGAGATTGCATGCATTCATCATCAAAA GAGTAGAACTTATGTTTTCAAAAGCTACAGTCCGACCAAATCAATGCCTG CCCGCTGTCGTTCTTTCTCTGTGCACAGGACAACAATCTGCAGGCGATCG TCGACGCGAAATGTGCTTCCAAACTGAACAAGGAAGCGACCAGGAAGAGC AAGGACGCTGAAAAATCGGGCACCACCGCGCTTGGGCGTTTGGCCATCAG CCAAGGCAACAGCCGATGCGGGCCGGGAGCTAAGTCTACGTCGTTTGGAG ACGCCATGGAGTCTGACGCAATCGCGTTTGCGTCCGCACAAAGCCAGCGA AGCGACAGGACGTCCCGAGTCGACCTCGCGGGCGGTTCCAGCGGACCGTC GACGCCGCCTACCATGGGCGAAGGTGTGTTAAGGTTTCCGGCGCTGGGCG ACCACCTGTCTATAGTGATGCATGCCCCACTAGCCGATGTCCTTGCGGCG AAGGCTGGGTCCACGCCACAGGAAGCGGAGTTCTTTCTCGAGTCGGGCGG CGAACTCCGGCGTGACAGTGCGGTGGCCATGATGAGAGTGGTAATTGAGG GAAAGCTCTTTGCGCGCCGAGGCTACATGACCGCGGAGGACTATGTAGAT CAGCACATAGCAGCCGGAGAGGGGCACGTGGAAATACCCGGGATGAGTGA ATCGGCCTTATCCGATCTGTGCAGCCACTACAGCGCCGATGCCAAGAAGT TTTACGGCCCAAACAAGGAGGCGCACAAGTGGTATGTTGTCGGCGTTAGG GCCGATGGCGGGAAAAACGAACGAGCCCCAAAGGATACGGAATACGATGC CGTTACTAGAACGATCGCGGAAGCTTTAGTGGTCACCGGCTGCGAGAAGG CAAACGAGGCTTCCAGCACCAGCGACCCCTCCTCTGCCGAGAAGGAGGCG ACGCCCCGTACCGTCACCCCCAATAGCATCGACGGCGCGGGTAGCGGGGC TAAGGGCTCGACTGCAGGGAAAGGTCCTTCGCGCGAGACCAGCGGTGGAG ACGGTAATCGCGGCAGGAAGACTCGGCGTAACGGCCAGCAACTCGAAGTG TTGACGCATGTATGTTTCTTGCCAGCTGCTGGACGAAATATCACAATCCC CCCCCTGTTGCCAATTCCGGCCCATATGTGCAGTTTGTTGCAGGACCAAA TGAAGATGATGGACGCTAGAGCCAAGGAGAGGGACGCCACGGAGGAGTTG AGGAGGAGAGGAAGGAGGCGAGGAAAAGAAAGGAACGCGAGTACGAGCGA CAGACTCGGCTTGAGGAAACCAAAATACGGTGGATGCCGAAAGGGTAGAG CGGCTGGCAGAACGGCAGCTCGAAAACCAGGAGAGGGACACCGAACGGAC CCACGAACGAAGAATGCTCGAGCTACAGGTACAAATCTTCAGCTGGCAAA AACAGGAACAACCCAGCATGTAGAAGAGTGATTTCTGCGATGCACTAGCT GGAATTTGATAAATGACGTGGTACTACCTGTCTGGGTCTTGTTCCGTTTT TTTGGAGGGGGAGCTTGTAAAAGTGTGTGTGTGTGTGATACTGGTTGCAA ACCTCTGACAGCCAGAGATGATAACAGAGTTCGTTTTGAGGGGTGAAGAA AGCTTCACCCTGTTCGTCCTTGTTGCCTTTTCTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1315:13073..18106-

>mRNA_P-littoralis_Contig1315.3.1 ID=mRNA_P-littoralis_Contig1315.3.1|Name=mRNA_P-littoralis_Contig1315.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1032bp|location=Sequence derived from alignment at P-littoralis_Contig1315:13073..18106- (Pylaiella littoralis U1_48)
ATGAAAGCTGAGCTGGACAACAATCTGCAGGCGATCGTCGACGCGAAATG
TGCTTCCAAACTGAACAAGGAAGCGACCAGGAAGAGCAAGGACGCTGAAA
AATCGGGCACCACCGCGCTTGGGCGTTTGGCCATCAGCCAAGGCAACAGC
CGATGCGGGCCGGGAGCTAAGTCTACGTCGTTTGGAGACGCCATGGAGTC
TGACGCAATCGCGTTTGCGTCCGCACAAAGCCAGCGAAGCGACAGGACGT
CCCGAGTCGACCTCGCGGGCGGTTCCAGCGGACCGTCGACGCCGCCTACC
ATGGGCGAAGGTGTGTTAAGGTTTCCGGCGCTGGGCGACCACCTGTCTAT
AGTGATGCATGCCCCACTAGCCGATGTCCTTGCGGCGAAGGCTGGGTCCA
CGCCACAGGAAGCGGAGTTCTTTCTCGAGTCGGGCGGCGAACTCCGGCGT
GACAGTGCGGTGGCCATGATGAGAGTGGTAATTGAGGGAAAGCTCTTTGC
GCGCCGAGGCTACATGACCGCGGAGGACTATGTAGATCAGCACATAGCAG
CCGGAGAGGGGCACGTGGAAATACCCGGGATGAGTGAATCGGCCTTATCC
GATCTGTGCAGCCACTACAGCGCCGATGCCAAGAAGTTTTACGGCCCAAA
CAAGGAGGCGCACAAGTGGTATGTTGTCGGCGTTAGGGCCGATGGCGGGA
AAAACGAACGAGCCCCAAAGGATACGGAATACGATGCCGTTACTAGAACG
ATCGCGGAAGCTTTAGTGGTCACCGGCTGCGAGAAGGCAAACGAGGCTTC
CAGCACCAGCGACCCCTCCTCTGCCGAGAAGGAGGCGACGCCCCGTACCG
TCACCCCCAATAGCATCGACGGCGCGGGTAGCGGGGCTAAGGGCTCGACT
GCAGGGAAAGGTCCTTCGCGCGAGACCAGCGGTGGAGACGGTAATCGCGG
CAGGAAGACTCGGCGTAACGGCCAGCAACTCGAAGTGTTGACGCATTTTG
TTGCAGGACCAAATGAAGATGATGGACGCTAG
back to top