mRNA_P-littoralis_Contig1314.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1314.7.1
Unique NamemRNA_P-littoralis_Contig1314.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1314.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1314contigP-littoralis_Contig1314:21707..23249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.631294-CDS-P-littoralis_Contig1314:21706..218431680789601.631294-CDS-P-littoralis_Contig1314:21706..21843Pylaiella littoralis U1_48CDSP-littoralis_Contig1314 21707..21843 -
1680789601.6488948-CDS-P-littoralis_Contig1314:23170..232491680789601.6488948-CDS-P-littoralis_Contig1314:23170..23249Pylaiella littoralis U1_48CDSP-littoralis_Contig1314 23171..23249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1314.7.1prot_P-littoralis_Contig1314.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1314 21707..23249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1314.7.1

>prot_P-littoralis_Contig1314.7.1 ID=prot_P-littoralis_Contig1314.7.1|Name=mRNA_P-littoralis_Contig1314.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
QVDGLLLPLSVLPKANNLQGVGSFQRNGRRRRSKKAESAAAPIVKVNSVT
PNATGKPETPPSSLAATPTTST
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mRNA from alignment at P-littoralis_Contig1314:21707..23249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1314.7.1 ID=mRNA_P-littoralis_Contig1314.7.1|Name=mRNA_P-littoralis_Contig1314.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1543bp|location=Sequence derived from alignment at P-littoralis_Contig1314:21707..23249- (Pylaiella littoralis U1_48)
CAGGTGGACGGACTGCTGCTGCCGTTGAGCGTGCTGCCAAAGGCAAACAA
CCTGCAAGGGGTGGGAAGCTTCCAAAGGAGTGAGTCCGTGTGACCTTTTT
GTTTTGACTCTTTGTGCGCGGGCCGTCACACATCGTAACCCTAGCTAGAT
GTGACTGTACACCCTTTTTTTTTCTTGGATAGAGAACAGATAAAACTTTA
CATTCGTGGCGTTGTTATTTCGTTGTTGTGGATGGACACAATGACATTGT
TTTGTGATTAGTTCTTGTGGATAGATACAATAGCACCGTTCTTTTTTTGT
TTATTGTAGTGGATAGATATAATCACATCGTTCTTGTACTGTTTTTTGTT
TAGAAGATGGGCAAAATAGTACCGTTCAGTCTTTTTTATCATTTGCGATA
CAGTAGAGAAAATCACCCCGTTCATATAATGTTTGTTTTGTTGGAGTGGA
TAGACAAAATCACATCGTGCTTGTATATACGGAGTATTTACTTTTTTTGT
GGCGGATGGAACAAATCGCGTGTCATTTTTTGTTTCTTTGTGATCACACT
GTACTTTTTTATTTTTTGTCGTTCGTCTATTGATCTTATAGTTACTGGAC
CATCGCCCTGGTTTGCCTTTGCCTGGGTCTGTCATGGCCCTGGGCCCTGG
TTCGATGTACGAAGTCATTCGAAGTATATGGTTATGGTTGAGGTCTGTCT
TGGTTATTTTTTTTTGTCGGACTGTTTCCTATTTTTGTTTTTCTTTCGAG
CCTGTTATTTTTTTTCTGTATTTTGTTTGGTACTCTGGCCGCCACAGATG
GTACCCCAACGGTACCATATCTGATTTGACTGTGGGTGATCATAGTCCAT
ATACTTCGTGTTATTATTGTATTTTACTTTTCCTCCTAGCACGATATGTG
CCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCCAATGTGAG
AATCAACAATAACAACACTGTGATTGTACTCATTTTGTTTTCGGTATTGT
GTTTTCACACTGTGCTTGTATTTTTTTTAGGGTCAGGAAAGAGCAAATCA
CACTTGTTTTTTCATTTTGTAGCGCGTAGAAAATCCCGTCGTTATAACAC
CGACGTTCTTGTACTGTTTTTTGAAGTGCAAACATCACATGCTCGCGAGA
AAAAATCTCACGCATGTACTGCAGAAGGAAGGTGGGGGTAACTCCTCCTG
TGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGCAGTTT
GAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGGGATGACAACACA
TGTCCATGAAACCATACCCATCTTGTATTGTACGTCGTTTCTTTACTTCA
TAGACATAATCACCCTGCTGTTCTTGTACCTTTTTTTTCAACGTCGGCTG
CGACAGATGGTAGGCGGAGAAGGAGTAAGAAAGCGGAGTCAGCAGCGGCG
CCAATCGTTAAGGTTAACAGCGTTACACCAAACGCCACTGGCAAGCCAGA
AACACCGCCGTCATCGCTTGCTGCCACGCCAACAACGTCGACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1314:21707..23249-

>mRNA_P-littoralis_Contig1314.7.1 ID=mRNA_P-littoralis_Contig1314.7.1|Name=mRNA_P-littoralis_Contig1314.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig1314:21707..23249- (Pylaiella littoralis U1_48)
CAGGTGGACGGACTGCTGCTGCCGTTGAGCGTGCTGCCAAAGGCAAACAA
CCTGCAAGGGGTGGGAAGCTTCCAAAGGAATGGTAGGCGGAGAAGGAGTA
AGAAAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGGTTAACAGCGTTACA
CCAAACGCCACTGGCAAGCCAGAAACACCGCCGTCATCGCTTGCTGCCAC
GCCAACAACGTCGACT
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