mRNA_P-littoralis_Contig1311.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1311.2.1
Unique NamemRNA_P-littoralis_Contig1311.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1311.2.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.070e-23
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    1 MLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGANLRTQDGIDDSLLYVKAGDTAADQARRSRERGVVVPDVDNPLKKLVFDRVRGIGVDILHQDSL 318
            +LD+P HS  +NTK +N  T + C  C+V +  L + +Y+I  N RT +G+D  + YVK G T  ++  R+++RGVVVP V NPLKKL FDR   +  DILH DSL
Sbjct:  463 ILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSL 568
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1311.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE27_9PHAE6.070e-2347.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1311contigP-littoralis_Contig1311:1735..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.1665576-CDS-P-littoralis_Contig1311:1734..20731680789601.1665576-CDS-P-littoralis_Contig1311:1734..2073Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 1735..2073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1311.2.1prot_P-littoralis_Contig1311.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1311 1735..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1311.2.1

>prot_P-littoralis_Contig1311.2.1 ID=prot_P-littoralis_Contig1311.2.1|Name=mRNA_P-littoralis_Contig1311.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGANLRTQDG
IDDSLLYVKAGDTAADQARRSRERGVVVPDVDNPLKKLVFDRVRGIGVDI
LHQDSLVSEDVF*
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mRNA from alignment at P-littoralis_Contig1311:1735..2073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1311.2.1 ID=mRNA_P-littoralis_Contig1311.2.1|Name=mRNA_P-littoralis_Contig1311.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1311:1735..2073+ (Pylaiella littoralis U1_48)
ATGCTCGACACCCCTTATCACAGTGCGTGGTCCAACACGAAGGGCTCAAA
CTCCAAAACCAAGAAGCCGTGTTCGACGTGCGAGGTCACCCAGGAGGAGC
TCTCTGACCACCAGTACAACATCGGCGCCAACCTTCGCACGCAGGATGGC
ATCGACGACTCTCTGTTGTACGTCAAAGCCGGGGACACAGCCGCGGACCA
GGCTCGCCGATCTCGTGAGAGAGGGGTAGTGGTTCCGGACGTGGATAACC
CGCTGAAGAAGCTGGTGTTCGACCGAGTTCGGGGCATCGGAGTTGACATA
CTGCACCAAGACTCCCTTGTGAGTGAAGACGTATTTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1311:1735..2073+

>mRNA_P-littoralis_Contig1311.2.1 ID=mRNA_P-littoralis_Contig1311.2.1|Name=mRNA_P-littoralis_Contig1311.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1311:1735..2073+ (Pylaiella littoralis U1_48)
ATGCTCGACACCCCTTATCACAGTGCGTGGTCCAACACGAAGGGCTCAAA
CTCCAAAACCAAGAAGCCGTGTTCGACGTGCGAGGTCACCCAGGAGGAGC
TCTCTGACCACCAGTACAACATCGGCGCCAACCTTCGCACGCAGGATGGC
ATCGACGACTCTCTGTTGTACGTCAAAGCCGGGGACACAGCCGCGGACCA
GGCTCGCCGATCTCGTGAGAGAGGGGTAGTGGTTCCGGACGTGGATAACC
CGCTGAAGAAGCTGGTGTTCGACCGAGTTCGGGGCATCGGAGTTGACATA
CTGCACCAAGACTCCCTTGTGAGTGAAGACGTATTTTAA
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