mRNA_P-littoralis_Contig131.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.102.1
Unique NamemRNA_P-littoralis_Contig131.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig131.102.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.030e-14
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:   90 ALPLVSNDLSAMLLTTIGNCSKENSKHLAMIQNAAVYYQCLVTKRKIGTTNTAGRDAHAKQNYLDHTVPGFFAWW 314
            AL L  N+ S  LL  + + +K+  KHL++IQNAA YYQCLVTKR+ GT +T  RDAHA+ NY + TVP F  WW
Sbjct:    5 ALLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWW 78
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BLAST of mRNA_P-littoralis_Contig131.102.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-5
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:   90 ALPLVSNDLSAMLLTTIGNCSKENSKHLAMIQNAAVYYQCLVTKRKIGTTNT 245
            AL L  N+ S  LL  + + +K+  KHL++IQNAA YYQCLVTKR+ GT +T
Sbjct:    5 ALLLPRNEHSHDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMST 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.030e-1454.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE1.290e-553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:450753..451391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.385758-UTR-P-littoralis_Contig131:450752..4508261680789600.385758-UTR-P-littoralis_Contig131:450752..450826Pylaiella littoralis U1_48UTRP-littoralis_Contig131 450753..450826 +
1680789600.4034257-UTR-P-littoralis_Contig131:451141..4513911680789600.4034257-UTR-P-littoralis_Contig131:451141..451391Pylaiella littoralis U1_48UTRP-littoralis_Contig131 451142..451391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.3957372-CDS-P-littoralis_Contig131:450826..4511411680789600.3957372-CDS-P-littoralis_Contig131:450826..451141Pylaiella littoralis U1_48CDSP-littoralis_Contig131 450827..451141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.102.1prot_P-littoralis_Contig131.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 450827..451141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.102.1

>prot_P-littoralis_Contig131.102.1 ID=prot_P-littoralis_Contig131.102.1|Name=mRNA_P-littoralis_Contig131.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MEEIFALPLVSNDLSAMLLTTIGNCSKENSKHLAMIQNAAVYYQCLVTKR
KIGTTNTAGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPIYVADAEAHGP
EHAD*
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mRNA from alignment at P-littoralis_Contig131:450753..451391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.102.1 ID=mRNA_P-littoralis_Contig131.102.1|Name=mRNA_P-littoralis_Contig131.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig131:450753..451391+ (Pylaiella littoralis U1_48)
CTGGATCCAGCCCAGTCGCCTTCGCTGCTGTGTATGCACACGCCGGCAAC
ACGCGCACGCCCTCTCTCAGCAGCATGGAGGAAATATTTGCTCTACCCCT
GGTCTCTAATGATCTCTCGGCTATGCTGCTCACAACCATCGGGAATTGTT
CCAAGGAGAACTCGAAGCATCTAGCTATGATTCAAAACGCGGCTGTGTAC
TATCAGTGCCTCGTGACAAAGCGCAAGATCGGCACCACAAACACCGCAGG
ACGGGATGCACACGCAAAGCAGAACTACCTCGACCACACCGTTCCTGGTT
TCTTTGCCTGGTGGAATAAGTCCTGCAAGCTGCCGATTCCTATATACGTG
GCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGACTGATCAAAGTGAGA
TGCGGAAAGATTGATAGGGTGGAGCAGCTGCAGCAGCAGCAGCAGCAGCG
GCACAGCTGCTGCAGCGGCAGCAGTAACAGCAGTAGTACCGGTACCAGTG
TTTGCGTGCCACAAACTCCCAAGCAGGCTAACACCACATATTTTTCGCCT
CTCTGTGCTGTTTCAGCCTTCGATCGCGAGTTCATCTGCTGGCACATCCA
ATATGGTTTATCTTGAAATATCTTTGTCGAGAAAGAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:450753..451391+

>mRNA_P-littoralis_Contig131.102.1 ID=mRNA_P-littoralis_Contig131.102.1|Name=mRNA_P-littoralis_Contig131.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig131:450753..451391+ (Pylaiella littoralis U1_48)
ATGGAGGAAATATTTGCTCTACCCCTGGTCTCTAATGATCTCTCGGCTAT
GCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAAGCATCTAG
CTATGATTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTGACAAAGCGC
AAGATCGGCACCACAAACACCGCAGGACGGGATGCACACGCAAAGCAGAA
CTACCTCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCT
GCAAGCTGCCGATTCCTATATACGTGGCTGACGCCGAAGCTCATGGGCCA
GAGCACGCTGACTGA
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