mRNA_P-littoralis_Contig130.103.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.103.3
Unique NamemRNA_P-littoralis_Contig130.103.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.620e-120
Identity = 171/264 (64.77%), Postives = 204/264 (77.27%), Query Frame = 3 
Query:  126 LHRSTR-ITVICCCGMASSSSGVNTNLLSQTELSTNCYNFPEESFGSSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDS-DGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWKQGGEGTWTDGD 911
            +H S R    +CCCG+A SS  +  +LL +TEL TNCYNFPEE+F            SPHL+ +LG+PAVDFTLHD DG RWNLGEVL  G GKPVV+IFGM +CPA+QGLD+ +GS + WAYW EH LVE YGD AIFVH+YGPEPHP  PD+NFDSG   PN WSV RQPV YD R+++A+ IRSITHPD+V+LPDYLT NPYSSLNQPVWCTYA+GAR SV+V+SSG +FYQQ W++T+ L  AID YW+Q G GTW DG+
Sbjct:    1 MHCSARRAAALCCCGIAVSSGLLTPDLLPETELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFGMWTCPAFQGLDAAEGSGNTWAYWHEHNLVEQYGDKAIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYWEQDGAGTWDDGE 264
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 3.430e-109
Identity = 152/210 (72.38%), Postives = 176/210 (83.81%), Query Frame = 3 
Query:  294 SPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDS-DGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWKQGGEGTWTDGDDIP 920
            SPHL+ +LG+PAVDFTLHD DG RWNLGEVL  G GKPVVLIFGM +CPAYQGLD  +GS + W+YWDEH LVE YGD AIFVH+YGPEPHP  PD+NFD+G   PNFWSV RQPV YD R+++A+ IRSITHPD+V+LPDYLT NPYSSLNQPVWCTYA+GAR SV+V+SSG VFYQQ WL+T+ LG AID YW+Q G GTW DG+ +P
Sbjct:   33 SPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFGMWTCPAYQGLDVIEGSGNTWSYWDEHTLVEQYGDKAIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYWEQDGAGTWDDGEGVP 242
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 3.300e-64
Identity = 111/233 (47.64%), Postives = 145/233 (62.23%), Query Frame = 3 
Query:  186 GVNTNLLSQTELSTNCYNFPEESFG-SSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWKQ 881
            G N  L  + +L++NC++FP  +F   +         +P+L L +G  AVDFTLHD +G RWNLGE LE  G  PVV+++GM  CP +QG  +    D+  Y DE+ LVE YG  A FVH+YGPEPHPA P  NFD G     FWSV  Q  +YD+R   A+ I  + HP Q IL DYL  NPYS L QPVWC+Y+ GAR   VV+  G +F+Q+ W +++ +G AID YW Q
Sbjct:  124 GANAELRPEADLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLEGRRWNLGETLERTG-LPVVMVWGMFICPGFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVYPQATSYDERAAMAQRINRLIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEYWCQ 355
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.940e-63
Identity = 111/233 (47.64%), Postives = 148/233 (63.52%), Query Frame = 3 
Query:  186 GVNTNLLSQTELSTNCYNFPEESFG-SSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWKQ 881
            G +  L  +++L++NC++FP  +F   +         +P+L L +G  AVDFTLHD  G RWNLGE LE  G  PVV+++GM +CPA+QG  +    D+  Y DE+ LVE YG  A FVH+YGPEPHPA P  NFD G     FWSV +Q   Y++R+  A+ I    HP Q IL DYL  NPYS L QPVWC+Y+ GAR   VV+  G +F+Q+GW +++ +G AID YW Q
Sbjct:  154 GASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLKGRRWNLGETLERTG-LPVVMVWGMFTCPAFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEYWCQ 385
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.820e-61
Identity = 105/238 (44.12%), Postives = 144/238 (60.50%), Query Frame = 3 
Query:  198 NLLSQTELSTNCYNFPEESFGSSXXXXXXXXXSPHLMLELGTPAVDFTLHDTD-GARWNLGEVLETGGG---KPVVLIFGMSSCPAYQGLDSDGSTDRW---AYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWKQGGE 890
            NL  ++EL+ NC++FP  +F            SP L+LE G+ A+DFT HD   G  WNL E LE  GG   KPVVLI+GM +CPA+QG+     +  W    Y DE+ LVE Y D   FVH+YGPEPHP +P  NFD G ++ ++WS   QP +Y+ RL     ++ + HP+Q I+PDY+  NPYS L  P+WC+Y  GAR +  +A  G +FYQQ WL+T  L   +D + +  G+
Sbjct:   30 NLRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLVETYKDRVTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFLEGRGD 267
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 7.240e-58
Identity = 100/227 (44.05%), Postives = 137/227 (60.35%), Query Frame = 3 
Query:  213 TELSTNCYNFPEESFGSSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDA---IFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPY-----SSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDA 869
            +EL+ +CY FP+++F  +         SPH++L+ G  A+DFTL+D DGA W L E L +   +PV LI+GM +CPA++GL +    D  AYWDE ALV  YG       F H+ GPEPHP +PD NFDSG +  NFWS   Q  TYD R+  AR +    HP+  +LPD L   PY     ++  QPVWC+YAHGAR++V++ + G V   Q W +   +  AI+A
Sbjct:    9 SELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEA 232
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.480e-45
Identity = 90/224 (40.18%), Postives = 123/224 (54.91%), Query Frame = 3 
Query:  213 TELSTNCYNFPEESFG--SSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLN---QPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDA 869
            ++LS+ C+  PE+ FG  S+         +  +    G  AVDFTL+D  G    L  +LE    KPV LI+GM +CPA+QGL SD   D+ + W+E  +VE Y D   F+H+ GPEPHP +PD NFD G +    WS  RQP  YD+RL  A  +    HPD  +L D    N Y++ +    PVWCT    +RS+++V   G + + Q W   D L  AIDA
Sbjct:   31 SQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDLAGNEVTLSTLLED---KPVALIWGMWTCPAFQGLRSDYPFDQNSRWEEWDVVEKYKDVVTFLHLVGPEPHPLAPDQNFDKGYVWMESWSTVRQPTNYDERLVLANKVAEYVHPDATVLADLYPGNSYAAADVSSNPVWCTMGLHSRSALLVDQDGTITFSQSWFRKDDLSAAIDA 251
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.940e-42
Identity = 92/240 (38.33%), Postives = 132/240 (55.00%), Query Frame = 3 
Query:  204 LSQTELSTNCYNFPEESFGSSXXXXXXXXXSPHLMLELG---TPAVD-FTLHDTDGARW-NLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGST--DRWAYWDEHALVEDYGDDAI-FVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSL-------NQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAYWK 878
            L    +  +C++FP+ SF ++         SPH+ + +G   +P +   TL    G+ W +LG   ET G K  VLI+GM +CPA+QGL + GS   D  +Y DE+ LVE Y +  + F+H+ GPEPHP +PD+NFDSG+ L N+WS   QP T+DDRL  A+   ++ HP  + L D L   P           NQP WCT   GAR+++++   G V + Q W     L  A+D   K
Sbjct:   16 LENRSIEADCFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSWKSLGT--ETSG-KISVLIWGMWTCPAFQGLGTGGSPPFDECSYRDEYDLVETYANKGVRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALDTLLK 252
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.510e-32
Identity = 75/222 (33.78%), Postives = 116/222 (52.25%), Query Frame = 3 
Query:  231 CYNFPEESFGSSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLD-SDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQ-------PVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAIDAY 872
            C+NFP   F             P  ++  G  A+DF L   D   + L +++ T   KPVV+++GM +CPA+QGL   D     ++ +D+ ALV+ Y  D  FV++Y  EPHP +PD NFD+G  +   WS  RQP TY DR   A+N+    H   ++L D L +     L +       PVWCTY  G+R + ++   G ++  QGW +  ++  A++ +
Sbjct:   62 CFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDDNVYYLRDLIRT---KPVVMVYGMLTCPAFQGLYLEDHKESHFSKYDQWALVDKYHKDFHFVNLYSVEPHPMAPDKNFDTGGHVEYAWSTFRQPRTYRDRGYFAQNLAEELHEKSILLVDNLGNEKLPELKENNIPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQGWFHATTMAGAMEEH 280
[Close]
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Match: A0A7S2G552_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G552_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.630e-25
Identity = 71/213 (33.33%), Postives = 99/213 (46.48%), Query Frame = 3 
Query:  201 LLSQTELSTNCYNFPEESFGSSXXXXXXXXXSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVLIFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHPASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDYLTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLN 839
            L  +  L T+C+ +PE SF             P+L    G PAVDFT+   DG   NL  +L T   KPVV+IFGM +CP                  E  L E YGDD  F+H+Y  +PHP SP  N D GR+    +S   +P  Y  RL+ A+        +  ++ D   ++P    N P+WCTY    RS+ ++   G +   Q W +
Sbjct:   35 LQGEHSLLTDCFGWPEASFSPENSVLSLYGQQPYLTRRTGDPAVDFTMKTIDGEVVNLKALLST---KPVVMIFGMYTCPVTHATLGH----------ERNLTELYGDDVHFLHIYSMDPHPESPQKNPDIGRVWEFDYSTIERPNNYTGRLELAKATAGTWGLNSKVIVD--EASPLR--NNPLWCTYGPSPRSAHLIRQDGIIQLAQTWFD 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.103.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JSG9_9PHAE1.620e-12064.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC80_ECTSI3.430e-10972.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCJ3_ECTSI3.300e-6447.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN7_9PHAE5.940e-6347.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0M4_9PHAE1.820e-6144.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1L4_9STRA7.240e-5844.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2RV85_9STRA5.480e-4540.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3K7C6_9STRA4.940e-4238.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2C362_9STRA2.510e-3233.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G552_9STRA8.630e-2533.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:444592..452677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1210884.HG799464_gene10441
PFAMsT4_deiodinase
Model size1954
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.6e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,2J0VV@203682|Planctomycetes
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_004760.1
DescriptionIodothyronine deiodinase
Cds size918
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789592.6823716-UTR-P-littoralis_Contig130:444591..4447071680789592.6823716-UTR-P-littoralis_Contig130:444591..444707Pylaiella littoralis U1_48UTRP-littoralis_Contig130 444592..444707 +
1680789592.7304316-UTR-P-littoralis_Contig130:451757..4526771680789592.7304316-UTR-P-littoralis_Contig130:451757..452677Pylaiella littoralis U1_48UTRP-littoralis_Contig130 451758..452677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789592.6980126-CDS-P-littoralis_Contig130:444707..4450971680789592.6980126-CDS-P-littoralis_Contig130:444707..445097Pylaiella littoralis U1_48CDSP-littoralis_Contig130 444708..445097 +
1680789592.7093105-CDS-P-littoralis_Contig130:450709..4509011680789592.7093105-CDS-P-littoralis_Contig130:450709..450901Pylaiella littoralis U1_48CDSP-littoralis_Contig130 450710..450901 +
1680789592.7182517-CDS-P-littoralis_Contig130:451421..4517571680789592.7182517-CDS-P-littoralis_Contig130:451421..451757Pylaiella littoralis U1_48CDSP-littoralis_Contig130 451422..451757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.103.3prot_P-littoralis_Contig130.103.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 444708..451757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.103.3

>prot_P-littoralis_Contig130.103.3 ID=prot_P-littoralis_Contig130.103.3|Name=mRNA_P-littoralis_Contig130.103.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=306bp
MMILHRSTRITVICCCGMASSSSGVNTNLLSQTELSTNCYNFPEESFGSS
NSVRNSFGSSPHLMLELGTPAVDFTLHDTDGARWNLGEVLETGGGKPVVL
IFGMSSCPAYQGLDSDGSTDRWAYWDEHALVEDYGDDAIFVHVYGPEPHP
ASPDINFDSGRLLPNFWSVRRQPVTYDDRLDRARNIRSITHPDQVILPDY
LTSNPYSSLNQPVWCTYAHGARSSVVVASSGHVFYQQGWLNTDSLGEAID
AYWKQGGEGTWTDGDDIPSPKDAAGKGKVKKPKVGQGKGSRKHHDLKVNS
AFGHR*
back to top

mRNA from alignment at P-littoralis_Contig130:444592..452677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.103.3 ID=mRNA_P-littoralis_Contig130.103.3|Name=mRNA_P-littoralis_Contig130.103.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=8086bp|location=Sequence derived from alignment at P-littoralis_Contig130:444592..452677+ (Pylaiella littoralis U1_48)
CACGAGCAGCCATCCTGCTTCTTGAAGTCCCAGCCCGGCACGGGAAGACG
GCGAGTGTACAAAACAACACTTCACTTGTGTTGTAGTGATCTGGTGCACC
CGGCCTTGCCCTCTTCATGATGATCCTGCATCGCTCAACGAGAATAACAG
TTATTTGCTGCTGCGGGATGGCCAGCTCCTCGAGCGGAGTGAACACGAAC
CTCTTGTCTCAGACGGAACTGAGCACGAATTGCTACAACTTTCCCGAGGA
AAGCTTTGGTTCGTCAAACTCGGTGAGGAATAGCTTTGGCTCAAGCCCTC
ACCTCATGCTTGAGCTCGGTACCCCGGCGGTGGACTTTACGTTGCACGAT
ACCGATGGCGCCCGGTGGAACCTTGGGGAAGTGTTGGAGACGGGAGGGGG
GAAGCCAGTGGTCCTCATTTTTGGGATGTCATCTTGCCCGGCGTACCAAG
GACTTGACTCGGATGGGTCCACGGACAGATGGGCTTACTGGGACGAGCAC
GCCCTGGTGAGAGACCCCATTCCAAAGGAAAGACATGCACAGCTGTTTTG
CGTTGGTTTCTCTTTGCTGTCGGAGAGGGAAAGGGTGTCCCAACACTCGA
GCACTCCAGCTCTCCTGATCTGTGTTGAAATCAAGAGGGGGTTATCCCGC
CGCAAATTAGTCACCTGTAAAAATGATTAGAGGGCAGACGCCAGAAAGCG
GTATACCGCCATGGTTCCGCGCCACAAAGCGGTACACCAGAATACACTTT
GATATTTGAGCCCCGTTCGCGTCGCTGATTGGCCCAACATGCCCTGTACC
GCCGTGTGGCACCATCGCCTAGCGGTATACCGCTTCGCGGCTTATCAGGT
CGGATTATACCGTTTTTTCGCACGGGGTGTACCGCTTTCTGGCGGTGTCG
GAGCATCCCCATCGAGACATATCACCGGCCGTTCGCACCCCAACCTGTTT
TTACTCGTCAACCGACGCAGCCATTTCATGCCACGGACACACAAAGTCAG
GCCTCCTCGGCTTGTTATCCAGACCTGGTGGTGGTCAGGGGGTATGATGG
GAGTTATATTAAACTCGATTCATAGGTAGGAGGAACATTCTCCAACCATT
GTCGCTACATCTACTTTCGGCGACTTCGGACGAATTTGGACTACGATATA
AAACTCACCCTAAACGCAAAATGCGACTAATCGCATCCGCATGGAAGACC
GATACTAAAACGAATATGTACACAAGAGAATCTTCATCGATCAAACCTCT
CCCATGTCCCTGCCCACACTGAAGCTAATACAGTCCAAATCGCTCGATTA
AAGTCTTGGGGCGCCCGATCGCTGTGTGTGACACGGTAAGGTATCATATC
ATACGCACGCGTACCCAGACACACCAGAACACCACACAACCACAGGACAT
GGGTTACGTTGGAAATCCAAAATGCAGACAAGTCACAACGTCTATACTTG
CATTCCGACTTGATGCTGCAGACAAACGCTGATGATGCAGAAGGAGCGGC
AATCCCGCAGACTTGTTTTAGCCCCGTTTCTATCTGATCACGAGTGAGTG
CGCTTTACATCTCAGCAGCAGCAGCAACAGCAGCAATGTCACCATCGTGC
TCTGCATCATCTGTACCCCATAATCTGTGCCCTACTCACCGCTCTCGCAG
GAGCTCATGTGTCCACTGCTCTACCGATCTCCGCCCGGCCCCCGTTTGTG
TAGCGTGTGTCTGTGTCTGTCTGTGTGTGTCGTTGTTGTTTAACTGCTGT
TGTTGATTCTCACATTCGGTCGTCTGTGTGTTTGTGTGTGTGTCTGGCAA
GTGTTGTGTGCTGCCGTGCGTGGTGTTGTGGTGTGTTAATAGACCGGAAC
AAAGGCGAAGTATATTTCCAGGTGGGGCTCCTGAGCCCCAAACCGCTTTT
TGCTGGTCGCTACACTGCTTTTGGAATGTAGCCCCGCTTGATTAGCACTC
ACATATAAACCTCAATACGCCGCTTTGCTTTGGTCGTTAGGGCCGAAACA
TCGCATCTTGAGTGACAGTCCCGCCGCGGCACGAGTCTGATCTGTACACA
CACATACACACATGGCACGTGCAACCATACAACCGCGACGGCGACACCTC
AACTACAGCGCTGTTCAATCTGTTCGCAGAAGTATCGACGCTGCAGGCTG
CCGCCTTTACTGGCAGCCATCGAACACCCCTTTGCGATGAACCATCTCTC
AGAGATGACGTACACGTTGTCTCTCGAAGCAAGCAAGTTAAATTGCGCGC
CTGGGGTAGTGGAGGTGTCGCCTTCGCGGCGGGCTGGTGTACGTGCGTGT
GCGCGCGTGCACGTGTCGTGTGTGTATGTGTGTGTGCAGATTCGTGCCGC
GGCGGGACTGTCACTTTTAATATGTGGTGCTTTGTCCTTTCTTTGGAAGT
GCAAGCGGCGGCGAGAGAGCCGTTGCCACGTTTGTGTCGCAAGACAACTG
GTTGATAACCGTGCTGAACTGCGTGATTTTATTAATTTGTACTGAACCTG
GCCATGAGGGTGAACTCTACCCACCACTCACCATCAAGTCCGGACAACAA
ACCGAGGAGGCCTGACTTTGTTTGTCCGCGGCATGAAATGGCTGCGTCGG
TTGACGAGTAAAAACCGGTGGGGGTGCTAACGGCCGGTGAAATGTCTCGA
TGGGGGTGCTCCGACACCGCCAGAAAGCGGTACATCCCGTGCCAAAAAAA
CGGTATACTCCGACCTGATAAGCCGCGAAGCGGTATACCGCTAGGCGATG
GTGCCACAGGGCGGTACAGGGCATGTTGGGCCAATCAGCGACGCGAACGA
GGCTCAAATATCAAAGTGTATTCTGGTGTACCGCTTCGTGGCGCGGAACC
ATGGCGGTATACCGCTTTCAGGCGTCTGCCCATAAGTAAATCATGTTCCT
GGCCGACGTATATGAAACCCTCTCTGTAAAGAACTTAACACATCCCATTG
GTGGAGTCCCGTCTCAAATGGGGGTTCTTCTTTGATGTCTTTTATTTTCT
CTTGAATCATGTACAGATATGCAGTCCTTTTTCCTTTTTCTTGCCCATAA
AAAAAAGCTCGGGTGTGACCTCCCTCCTGTGTGACCCCGGCTGAAGTACC
CACATCATACCGAAAGGTGTAGACTGCTGCCCAGAATATATAGGATAACA
CACATACCGTACACGCACACCGGCCGGTTCGCCCACATGTGCCGTAAAGG
TGTAGACTGGCACCCCAACACACCGAGAGACGGTGCTACGGGTGGGTGTA
CGCCTACGTACCATGTTTTGTGATGCTGATACTACGAAGTAGTATCATAC
ATGATTCACACAGATATTTTTGTAGCAAGAGCGGCTTCCCCGCAAGTATC
ATTCCCGTATTATCACAACATCACAGATTGCAGAGGATTTGGCACGGTAT
TTTGAGCGGGTACAATCGTCTTCGGCGTATGATATGATAGAGCATAACCT
TTTGGCCTTCTACTACCGTAGGCAGGGTGGGGTCAAGATTCAGGGCCTGT
TCTAGCGAAAAATGTGGCACCCTGAACGGAGGCCCAACTTGTACAGTCCT
AGAAGTGTATGCTTTCTGGCAAAAATACCAACGTCGTTTGAACGTTTCGC
TGGGATTGGCCGGGCAATTGCAGGGTCTGCGTTTTAAAGATGCGAAATAC
ATGGAAACCCTGCAGGAAGCATGCTGTGGTTAGTGGTTGACAGGCGGTTG
AACGCCAGCGCCGACTACCGCTGTTGTACTCCTGTCTGCAGAAGGCATTC
GCGCGTCCGCACAACCTTGCGTCCGCCGAGAAGCCGCGGTGGGCGTGGAG
CTCAGCAGACGGGGCACTTTCCGCTCCCACCTGGCCACAGTTCATGGTTG
ATGCCAGCCATCGGCACGTAGCGATGTGTGTGTGGGTGTGGACCTGCGCC
CCTCGCCTGCCCATGGTAACTGCGTGCATGCGTTTTGTCGGTCTCTTTGG
GTGGAAATACTTCTGCCGTACTGCTGTACCACAACATTTTGCCATTTTAT
CACACCGCCTTTCGCTTCTCTCATCAACTCCCTTATGCCATTCCTGTTCC
GATTCGTCGGATTCCAATTATCAACCTCCCGATCGAGAGGCAGATGTGTT
TGGATGCGAAAGCTAGTCCCGTAGAATGCAAAACTTGACTGACCAATCAG
AGGCTGTTCCAATTCCAACCAAAAGTGGAAAATTGTTAAACTGCCGCGTG
AAGCCCAGAGAAAAAAAGGCGTGAATTGCCGAAATCATGCAGAGGATGCA
TCTCCTATGATATCGCCAAAGCAAAGCGAGGAAAGAGCGTAAAGCGCAGG
GTGGGGCAGAGTAAAACGAGCGAAAAATAACATTTATTCGATTCGCAACA
CGCTGAACCCACAGAACGCGGCATCGGTGGCAGAGTCGCTTTGAAACGGG
GAGATGATGAGGAGAAGAAGTGAATAGGATCACAACCGCTAGTCAATCTC
GTACATATCTTCTATCTTGCTCTTCGCCTGCTGCCGCCGATGTTGCACAC
ACTCAGAAAGAGCTACTACTATCCATTGATTTTGTACTTGAGAGCGACTC
AAAACCAAAAGTAGCAGTGGTGCGACCCTCTCTACGAGGGAACTCAAGCA
TCTGCATCCCTCCTACAGCAGTACCCAGCGGGTGAAGATGTGAGAGCTGT
TTGCCTCGCTAGGTTGGGGTTGCTTGATGGACGTGTGCGATGGTCTGGTT
TCTCTCGGGTTCCAACAGGAAACATGTTTTCAACAAGGCAAGAGGCTCGG
GTTTGGGGGTAGACTCGGTTTTAGGTTTTAAGAGAGAGGTGCGCCCAGCT
TCGGTCACCTCTCTTTTCTCGGAATAACTGAGCCCTCGTCTGTTTCATTT
CATACTGCTGCACTGTAGTACTTGGTGGTAACTCGAGTGTTGGGTTGGAT
GATATCCCAGTCGCATTCTTGTTGTATGAACTGCTGTTGATCTTTTGTCG
TCTACCAGCCCAACCTTCCTCCATCGCGCAGCAACTCTGCACGTCTGTTT
GCCTCGAGTATACAGAAAGTGTCATTACAGACGGTTGAGGTTCCCACTTT
GATTCACAGCCGTTGGACACCAAATTAGGCAGGTACCCATCACAGTATCT
CATGACACTGATACCGACTGCTTTTAAGTGTGGACAGATCCACCCCTCTA
CCCCTTCTACCACTTTGACGAGCCCATGCCTACTTTCTACTCGTGTACGG
TAGGCGAGCGCTTGGAGTTGCTCTACTGCACAGCTGGTGTACTCGTCTGT
CTGTCTCTCTCAGCCCTGTGTGTCGAACATCATGTATGTGTGCGCGCCTC
CGAACGGCCCAGCAGTCTTGTTCCGCGTGCGATTGTCACCTGTTTGTTCG
GCTGTTCTTGTTGAAATTATCTCAATATGAATCATTAATCGGAGTGAGTG
CAGAGAGGGGTGACGCTGGTACACGGGGGTGAACACGTAGGAACTTCAGC
CCTTCGACCAATCAGAAGGCTTGAAAAAAAAAAACAGTACAACCACCATC
ACTATTACTGTACCGTCACAACCTAAATACTTCGAGTAGCTTTTTGCACC
GGCTGAGATTCACGTTTAAGTTACACTAGGCTTTACGTGTCTTGGCTTGA
AGCGTATAACCCCACTCTATCATATCATCTGAATGGGCGACTATTAGAGT
TATCGGTCCCCCCATGTGGTCAGATACGTTTGACACTGTGCTACAGCAAT
CGTCGGATATGCCCCACTTTACCTGTGCCACGCAAGTTTCAGGATTTCAG
GATGCCACTGTGTGCCACGCCGACAAAACTGTGTGCCACGCCGAGCCACG
CCGACAGAAGCGGGCAATGTCGAGAGCACAGGCACACTGACCGTTCTTGC
TGTCTGTGACTAGTACAGGTAGGAACTAATACCTCTGCCATTCGAGTACA
AAGCTGAAAAGTGCTGAAAAGTGTGCTCCACCATTAATGGCCAGCATGGG
AGCCGTCGTGTTTGTTTTACCAGTAGAAGGACATCGACTGTTGCCCGTTA
CCACAGCCTTGCCTTACCCACGCCATGTCATACCCCACGAACGACTTCGG
TGCTGCCGACTGACGTGGCTGCTGACGACATGCACGCGCGTGTGCTCTTG
ACTTGTGACATGCAACAGGTGGAAGACTACGGAGACGACGCCATTTTCGT
GCACGTCTACGGGCCGGAGCCGCACCCCGCATCGCCGGACATTAACTTCG
ATTCCGGGAGGCTCTTGCCTAATTTTTGGAGCGTCCGGCGGCAGCCTGTG
ACGTACGACGACCGACTAGACCGAGCGAGGAACATTCGCAGCATAACCCA
CCCGGATCAGGTGTCTGGTACTTTGTTTTGAGAGTTTTTTTCAGGTAATT
TCGTATTTTCCGAGCATCCCACTTGCCGCGAGGTACTGCTGCAGAAAGGA
ACCTGCCGTGGTATACGACCGGTAATGTATAGGTGAGATGGGTGTTGTGC
CGTTGCTGTAAGCCAGTGTCACGAGAGTCATGTCAACAACTGCCCATCAG
TGTAGGAGTCCTCAAGGTTACAACAGGAGCCGCGCATTGTGGGCGGCTGT
CATGGCCAAGAGAGCTCGCGCTCTGCGCCTGGTTTTTGAACTTCCCGGTG
GATACCCGCAAGTTTGTGACCGTGAATGAAGACGTATGGGATTTGAAGCG
ATTTCTTTCAGAACAGTCTACCCCCTACTATCGTATCCGCTCTTGTTACT
TCGTGCTTCGAAGTATTTAATACCCTCGCCTGGGAGGATGCCTTCGTCTT
TTGACGCCTCCTCAACCCCCCCGCGCGTGAAATTCGTTTTCTTTCACCTG
ACAACACGGTGCACGCGACACTTCACGCAGGTTATCCTTCCAGACTACCT
CACGAGCAACCCGTACAGCTCGCTTAACCAGCCGGTGTGGTGCACCTACG
CCCACGGAGCTCGGTCCTCCGTCGTTGTCGCTTCCAGTGGGCACGTCTTT
TACCAGCAGGGGTGGCTCAACACCGATTCCCTTGGAGAAGCCATCGACGC
CTACTGGAAGCAGGGTGGTGAAGGGACGTGGACCGACGGGGATGACATCC
CTTCACCAAAGGATGCCGCCGGCAAGGGGAAAGTAAAGAAGCCAAAGGTT
GGGCAGGGAAAAGGCAGCCGAAAGCACCATGACTTGAAAGTCAACAGTGC
CTTTGGGCACAGGTAGCATCCATTTTGATCATTTGTAAAAGGCCCATTCC
AGTACTCTCGAATTAGAAGTTTTGTTTTATGTTTGTGATGAAGTTTTTTG
TCGATATTTTTGGTTGACATTTTTTTTTTAACTGTAAGACTTTGTGAGAT
ACAGTCTTCAGTCGGACGCCGTCAAGATGAAGTGGGCGAAGGGATTGATC
GTGGTGCCTGGTTGCCCAATCCGTTTCAGCGCGATCGTGGATGCACTCGA
AGTCGAGGAGACTGTGGCGTATGCTGGTGCTGGAAATCACACCAGCTTGT
GGTGTGCCTTCAAGATGAATGCGTCCAAGTAGCTCCACTCACGACGTGAC
TAGGAAAGTACTGAAGGCAACGACTACTGCTGTGCTTTCATAGAAGACAG
AAACTTGATTGTACATGCTGTATGGCCCACGCGCTTTGCGTACTCCGGAC
GAACTTTGGTGGACAGCCGAACAATGTTGCAGGACCCACTTGTAGGCGGG
GAGATCACTGTCGCGATTGAGCTTCGGAAGCGCTGGGAGATACAAGTACG
GAATACGAATATGTGCCAGGTGTTTTTTCGGTGTCTTGTCTTTCTTTTGC
ATTTCACATGAGTGTTTTTCTGTTCTTGGCGTTCAGGATTTCTGGGTGAC
ACGCGCTTAGTATGTACTTCGAAGTACGTACGTACCTGGAACAAATCGGT
CACGTGATGTTGGAAGCTTGTAACTACAAAGTAAAAAGGGACACGCATCC
GGTGTGGATGAGAGTTGTTTCAACGATTGGTTACACCGACACAAGTCATG
GCGCCTTGTTCGTGTGCGTGCCAACCAGTCACAGAGGGTCCCAACCATCG
CGCTGGGCTGTGCATGTCATATGATATGCGTATGATTTTCCACGTTGGTG
CTATTTCCAAACACCTGGTAATTGGTTCTCACTTGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig130:444592..452677+

>mRNA_P-littoralis_Contig130.103.3 ID=mRNA_P-littoralis_Contig130.103.3|Name=mRNA_P-littoralis_Contig130.103.3|organism=Pylaiella littoralis U1_48|type=CDS|length=918bp|location=Sequence derived from alignment at P-littoralis_Contig130:444592..452677+ (Pylaiella littoralis U1_48)
ATGATGATCCTGCATCGCTCAACGAGAATAACAGTTATTTGCTGCTGCGG
GATGGCCAGCTCCTCGAGCGGAGTGAACACGAACCTCTTGTCTCAGACGG
AACTGAGCACGAATTGCTACAACTTTCCCGAGGAAAGCTTTGGTTCGTCA
AACTCGGTGAGGAATAGCTTTGGCTCAAGCCCTCACCTCATGCTTGAGCT
CGGTACCCCGGCGGTGGACTTTACGTTGCACGATACCGATGGCGCCCGGT
GGAACCTTGGGGAAGTGTTGGAGACGGGAGGGGGGAAGCCAGTGGTCCTC
ATTTTTGGGATGTCATCTTGCCCGGCGTACCAAGGACTTGACTCGGATGG
GTCCACGGACAGATGGGCTTACTGGGACGAGCACGCCCTGGTGGAAGACT
ACGGAGACGACGCCATTTTCGTGCACGTCTACGGGCCGGAGCCGCACCCC
GCATCGCCGGACATTAACTTCGATTCCGGGAGGCTCTTGCCTAATTTTTG
GAGCGTCCGGCGGCAGCCTGTGACGTACGACGACCGACTAGACCGAGCGA
GGAACATTCGCAGCATAACCCACCCGGATCAGGTTATCCTTCCAGACTAC
CTCACGAGCAACCCGTACAGCTCGCTTAACCAGCCGGTGTGGTGCACCTA
CGCCCACGGAGCTCGGTCCTCCGTCGTTGTCGCTTCCAGTGGGCACGTCT
TTTACCAGCAGGGGTGGCTCAACACCGATTCCCTTGGAGAAGCCATCGAC
GCCTACTGGAAGCAGGGTGGTGAAGGGACGTGGACCGACGGGGATGACAT
CCCTTCACCAAAGGATGCCGCCGGCAAGGGGAAAGTAAAGAAGCCAAAGG
TTGGGCAGGGAAAAGGCAGCCGAAAGCACCATGACTTGAAAGTCAACAGT
GCCTTTGGGCACAGGTAG
back to top