mRNA_P-littoralis_Contig1.418.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.418.1
Unique NamemRNA_P-littoralis_Contig1.418.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1833987..1834405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size419
Hectar predicted targeting categorysignal peptide
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.423685-UTR-P-littoralis_Contig1:1833986..18340571680789309.423685-UTR-P-littoralis_Contig1:1833986..1834057Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1833987..1834057 -
1680789309.443012-UTR-P-littoralis_Contig1:1834372..18344051680789309.443012-UTR-P-littoralis_Contig1:1834372..1834405Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1834373..1834405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.4347246-CDS-P-littoralis_Contig1:1834057..18343721680789309.4347246-CDS-P-littoralis_Contig1:1834057..1834372Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1834058..1834372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.418.1prot_P-littoralis_Contig1.418.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1834058..1834372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.418.1

>prot_P-littoralis_Contig1.418.1 ID=prot_P-littoralis_Contig1.418.1|Name=mRNA_P-littoralis_Contig1.418.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MLQRTRVYVFFVLCLCVSSVCTTRVLSPPEYIFGMFSAPDSVRVFFYFVF
HQRVCAHAEPPPTPYTHPIRRFLGYGERTSLCACVVLFCLRILLTASKTG
KRWC*
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mRNA from alignment at P-littoralis_Contig1:1833987..1834405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.418.1 ID=mRNA_P-littoralis_Contig1.418.1|Name=mRNA_P-littoralis_Contig1.418.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=419bp|location=Sequence derived from alignment at P-littoralis_Contig1:1833987..1834405- (Pylaiella littoralis U1_48)
CCCCCCCCTTCCCTCTCTGAATACTTTGTGGGCATGCTCCAACGCACCAG
AGTATATGTGTTTTTTGTTTTATGTCTCTGTGTTTCATCGGTGTGCACAA
CACGCGTTTTGTCCCCCCCAGAATACATTTTTGGTATGTTTAGCGCACCA
GACAGCGTGCGTGTGTTTTTTTACTTTGTGTTTCATCAACGGGTGTGTGC
ACATGCGGAGCCCCCTCCCACTCCATACACACACCCCATTCGTCGCTTTT
TGGGGTATGGTGAACGTACCAGTCTGTGTGCGTGTGTGGTTTTATTTTGC
CTTCGTATTTTGTTGACGGCATCAAAGACTGGCAAGCGGTGGTGCTGATA
ATGCCGTGCACGTCTGTGCCCCCCCCGGGATTGTTGTTGTTAGTGTCAAC
GCATAGTTGTTGCGGTCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1833987..1834405-

>mRNA_P-littoralis_Contig1.418.1 ID=mRNA_P-littoralis_Contig1.418.1|Name=mRNA_P-littoralis_Contig1.418.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig1:1833987..1834405- (Pylaiella littoralis U1_48)
ATGCTCCAACGCACCAGAGTATATGTGTTTTTTGTTTTATGTCTCTGTGT
TTCATCGGTGTGCACAACACGCGTTTTGTCCCCCCCAGAATACATTTTTG
GTATGTTTAGCGCACCAGACAGCGTGCGTGTGTTTTTTTACTTTGTGTTT
CATCAACGGGTGTGTGCACATGCGGAGCCCCCTCCCACTCCATACACACA
CCCCATTCGTCGCTTTTTGGGGTATGGTGAACGTACCAGTCTGTGTGCGT
GTGTGGTTTTATTTTGCCTTCGTATTTTGTTGACGGCATCAAAGACTGGC
AAGCGGTGGTGCTGA
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