mRNA_P-littoralis_Contig130.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.12.1
Unique NamemRNA_P-littoralis_Contig130.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Match: D8LC49_ECTSI (TPR Domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC49_ECTSI)

HSP 1 Score: 524 bits (1349), Expect = 1.680e-177
Identity = 340/593 (57.34%), Postives = 397/593 (66.95%), Query Frame = 1 
Query:   25 VDYSEDSVDKDIWDLKKEGKDEDAILAAEESLHRVVVSYGPSSEETRRVATDLVLAYNHLSMKRLAENNIKGSLCLLQKAKLLTSRDQSFLGDARLQARALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGADNPAGTHVNMSAALSTLGLHRAAAVHAGHAIDLASQAIMGQAAG-SLVPSGEDSVTAGGGHVGAAGPGLVEEGGST--SVDATIADDAVGSSCSTRGNDCRTAVIGGAPESSSDAPPLLRGSADGGTIDSAA-ADNGRSSATFSSSPPSTQDANLGIPDQEKKGVRIRAPTNSAADDRRISPGSVNTSVTEDTSSLERREVLAAAAGGLLAIAHFNLGVEREHLGQLEAALSSYEDARVAADQHLGPESPVAKGIGVALEKASAAAVATASYSSKRAAWRSRSAVSSFPSIGKLQFGQRTPDGVSSFGGRRVSPRRLRHEQQYGEE-----TARDLLDRAYSCARPCPAPPRTDSWSRLGRTLSPRSPQTAPGSESVGGPQRAGRWMTSDAPAARPMRTQGSAARG--EGPSRPCSVDEDLRWRALACKKWQCSPREALHAQQ--AANRRVDVGVA 1764
            +  + + +   I  L+K G D  A++AAEESL R V S+GPSSEETR VA DLVLAYNHL+MKRL+ENNIK S+ LLQKA LLTSR Q FLG ARLQARALTLNN GCLMK WGK RE VKFLARA+RIE +VPGGADNPAGTHVNMSAALST+GLHR AA+HAGHAIDLASQA+M Q AG S V   ED  TA G       P  ++E G+   SV  T AD          GN   +  + G  ESSS   P ++G  DG T+ S+A AD+GR+ +  +SS  S   A+  +P+  KK       T                SV  DTSS++R++   +AAGGLLAIA FNLGVEREHLGQL+AA++SY+ AR AADQHLGPESPVAKGI  ALEKASAAA   ASYS KRAA RSR AVSSFP IGKL+FGQ+     S F G  +SPR  R +QQ+GEE     TARDLL+ AY+  RPCPAPP   SW+RLG   +PRS    P   +  GPQRAGRW + D PAAR M+     + G   G  +   VD DLRWRALAC +WQCSPREALHAQ+  A    VDVGVA
Sbjct:   12 ISETSEEIRSRILSLRKGGNDHGAVVAAEESLTRSVDSHGPSSEETREVAADLVLAYNHLAMKRLSENNIKASVRLLQKASLLTSRGQPFLGKARLQARALTLNNFGCLMKNWGKPRESVKFLARALRIEAKVPGGADNPAGTHVNMSAALSTIGLHREAAMHAGHAIDLASQAMMEQEAGFSYV---EDPNTASGD------PADMDEDGAAVASVHLTSADSGTKGGVGDSGNSVPSVGVTGCLESSSVPRPEVQGE-DGETVSSSAVADDGRTCSPEASS--SVHHADHDVPEGGKKANPAENGTEGHGGXXXXESAGDEKSVQGDTSSVDRQDGPPSAAGGLLAIACFNLGVEREHLGQLDAAIASYKYARSAADQHLGPESPVAKGIETALEKASAAAATAASYSRKRAASRSRVAVSSFPCIGKLKFGQKNSQVPSRFDGVGLSPR-CRSQQQHGEEVVGEATARDLLEHAYTSPRPCPAPPHKGSWARLGHVPTPRS--APPARSASRGPQRAGRWTSVDTPAARAMKEAQRRSEGWRNGGRKRGDVDGDLRWRALACAEWQCSPREALHAQRQVAEQHGVDVGVA 589
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BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Match: A0A7S1H3R9_HEMAN (Hypothetical protein n=6 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3R9_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.580e-14
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 1 
Query:   49 DKDIWDLKKEGKDEDAILAAEESLHRVVVSYGPSSEETRRVATDLVLAYNHLSMKRLAENNIKGSLCLLQKAKLLTSRDQSFLGDA--RLQARALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGADNPAGTHVNMSAALSTLGLHRAAAVHAGHAIDLASQAI 549
            D+   +L++EG+  +A+   E  L       G    E  +     + + N  +M  L   ++  S  LL+KA+++T   +  + D   RL+ RA+TLNNLGC M++ GK+   +++L +A+RIE  V    DNPAGTH+NM A LS L  H AA  HA  A+ L   A+
Sbjct:   18 DRKHEELRREGRTVEALTELERGLFLRREVLGDKHAEVEKCCCAFISSTNSTAMTALQAGDMLLSFELLKKAEIVTE-PRGLIRDTMTRLKMRAITLNNLGCFMRRRGKLHSALQYLDKALRIELTVKT-VDNPAGTHLNMCAVLSQLNRHAAALQHAQCALQLLEDAV 184
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BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Match: A0A7S1SZ57_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZ57_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 6.210e-13
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:  193 YNHLSMKRLAENNIKGSLCLLQKAKLLTSRDQSFLG--DARLQARALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGA-DNPAGTHVNMSAALSTLGLHRA 501
            YN L ++ L       S  + +KA++LT+   S     +AR++ RA+T NNLGC  K+ GK+   + +L R ++IE     GA +NPA TH+N++A LSTLG H A
Sbjct:    3 YNVLGLRLLEAEQFDASYEMFKKAEMLTAPGSSLAEKPEARMRLRAITFNNLGCYYKQRGKLHAALHYLERTVKIEEAADIGAVENPASTHLNIAATLSTLGRHSA 108
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BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Match: A0A7S0HFD1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HFD1_9CRYP)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-10
Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = 1 
Query:   73 KEGKDEDAILAAEESLHRVVVSYGPSSEETRRVATDLVLAYNHLSMKRLAENNIKGSLCLLQKAKLLTSRDQSFLGDARLQAR--ALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGADNPAGTHVNMSAALSTLGLHRAAAVHAGHAIDLASQAIMGQAAGSLVPS 582
            ++GK+  A+L  E +      + G    + +R    LV++YN L M  +    ++ +  LL+KA+ +   ++S L D  L+ R  A+T NNLGC  +  G +   +K L +A+ IE      +DNPA TH+N+SA LS L  H AA  H   A+ L  +A+  Q   S + S
Sbjct:    3 EQGKNLQALLLLERTSLLRREALGIDHPDVQRSLQVLVMSYNGLGMAAIRAGGMEVAWELLRKAERVAG-ERSLLKDKELKNRLLAITYNNLGCFYRTRGNLHSALKALDKALWIEMSCDE-SDNPAATHLNISAVLSKLSKHHAALEHINCALQLLDKAMKNQKRSSSLKS 172
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BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Match: G0UVA9_TRYCI (Uncharacterized protein (Fragment) n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UVA9_TRYCI)

HSP 1 Score: 57.8 bits (138), Expect = 6.150e-5
Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:  172 ATDLVLAYNHLSMKRLAENNIKGSLCLLQKAKLLT----SRDQSFLGDA---RLQARALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGADNPAGTHVNMSAALSTLGLHRAAAVHAGHAIDLASQAIMGQAAGSLVPSG 585
            A D+VL  N+ ++    E     +   L KA  LT    + + ++  DA   R++ RA TLNNLGC+ K+ G++ E +K L +A+ +E  +   A     T++N+   L+ L  H  A +    A+    + ++ Q     +PSG
Sbjct:  101 AADIVLRCNNNAVNAFNEKCFDVAEFFLAKALFLTDSRAAEELNYFPDAESRRIRLRAATLNNLGCMEKRRGRLEESLKHLRQAVELEVALDRSAGGSPSTYLNLCTVLNELQRHDEAVIAVESALAALDEQMLRQQRKQQLPSG 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC49_ECTSI1.680e-17757.34TPR Domain containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1H3R9_HEMAN1.580e-1435.50Hypothetical protein n=6 Tax=Hemiselmis andersenii... [more]
A0A7S1SZ57_9CHLO6.210e-1340.57Hypothetical protein (Fragment) n=2 Tax=Tetraselmi... [more]
A0A7S0HFD1_9CRYP1.290e-1033.14Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
G0UVA9_TRYCI6.150e-528.97Uncharacterized protein (Fragment) n=1 Tax=Trypano... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:55794..57841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX41349
PFAMsTPR_12
Model size1764
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.5e-18
EggNOG OGs28ZWJ@1|root,2R6RA@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004460.1
DescriptionTetratricopeptide repeat
Cds size1764
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789588.0761206-CDS-P-littoralis_Contig130:55793..560301680789588.0761206-CDS-P-littoralis_Contig130:55793..56030Pylaiella littoralis U1_48CDSP-littoralis_Contig130 55794..56030 +
1680789588.088324-CDS-P-littoralis_Contig130:56314..578411680789588.088324-CDS-P-littoralis_Contig130:56314..57841Pylaiella littoralis U1_48CDSP-littoralis_Contig130 56315..57841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.12.1prot_P-littoralis_Contig130.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 55794..57841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.12.1

>prot_P-littoralis_Contig130.12.1 ID=prot_P-littoralis_Contig130.12.1|Name=mRNA_P-littoralis_Contig130.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=588bp
MEARSRLGVDYSEDSVDKDIWDLKKEGKDEDAILAAEESLHRVVVSYGPS
SEETRRVATDLVLAYNHLSMKRLAENNIKGSLCLLQKAKLLTSRDQSFLG
DARLQARALTLNNLGCLMKKWGKVREGVKFLARAIRIEGEVPGGADNPAG
THVNMSAALSTLGLHRAAAVHAGHAIDLASQAIMGQAAGSLVPSGEDSVT
AGGGHVGAAGPGLVEEGGSTSVDATIADDAVGSSCSTRGNDCRTAVIGGA
PESSSDAPPLLRGSADGGTIDSAAADNGRSSATFSSSPPSTQDANLGIPD
QEKKGVRIRAPTNSAADDRRISPGSVNTSVTEDTSSLERREVLAAAAGGL
LAIAHFNLGVEREHLGQLEAALSSYEDARVAADQHLGPESPVAKGIGVAL
EKASAAAVATASYSSKRAAWRSRSAVSSFPSIGKLQFGQRTPDGVSSFGG
RRVSPRRLRHEQQYGEETARDLLDRAYSCARPCPAPPRTDSWSRLGRTLS
PRSPQTAPGSESVGGPQRAGRWMTSDAPAARPMRTQGSAARGEGPSRPCS
VDEDLRWRALACKKWQCSPREALHAQQAANRRVDVGVA
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mRNA from alignment at P-littoralis_Contig130:55794..57841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.12.1 ID=mRNA_P-littoralis_Contig130.12.1|Name=mRNA_P-littoralis_Contig130.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2048bp|location=Sequence derived from alignment at P-littoralis_Contig130:55794..57841+ (Pylaiella littoralis U1_48)
ATGGAGGCACGCAGTAGGCTGGGGGTCGACTACAGCGAGGATTCAGTAGA
CAAGGACATCTGGGATCTGAAGAAGGAAGGAAAGGACGAGGATGCTATCC
TTGCGGCGGAGGAGAGCTTGCATCGGGTCGTGGTCTCTTATGGTCCCAGC
TCTGAAGAGACGCGCAGAGTCGCAACAGACCTCGTATTAGCCTACAATCA
CCTCTCCATGAAAAGGCTAGCTGAAAATAACATCAAGGTGAACTTGCCTG
GGTTGACGTGGAGTGCATGTCTTGTTCACGGTCTTTCTGTATTGTGGCGT
ATAAAGAAAACTGGATCTCGACTGTAGTGTGCAGGCGCAGTCCGGTCTTC
TGTGTGTGCGCTCATGTGACGTAAGACAGACGTGGAATACCGACCAACGC
TGAAACGTTTCTAACCAACGGGCCGACTAACTCACAGCTTATCCTACCTC
TTTCTCTCTGACCTCCCGCACTACTTTTCTGCACTCTCACAACAATGACT
GTAATATACATAAATAAACAGGGCTCTCTCTGCCTGCTACAGAAAGCGAA
GCTCCTCACTAGCCGGGATCAGTCTTTTCTTGGCGACGCCCGGCTTCAGG
CTCGCGCGCTGACTCTGAATAATCTCGGTTGTCTGATGAAGAAGTGGGGA
AAGGTGCGCGAGGGTGTAAAGTTTCTCGCGCGGGCGATCAGAATAGAAGG
CGAGGTTCCCGGGGGCGCGGATAATCCGGCCGGTACGCACGTAAATATGA
GCGCCGCTCTGTCAACCCTTGGGCTCCACCGTGCGGCCGCCGTTCACGCT
GGCCACGCCATTGATCTCGCGTCTCAAGCGATAATGGGGCAAGCAGCAGG
CTCCTTAGTGCCCTCGGGGGAGGACTCCGTCACCGCAGGAGGGGGTCATG
TTGGCGCCGCCGGACCAGGACTCGTAGAGGAGGGTGGATCTACGTCAGTT
GATGCTACCATTGCTGACGATGCTGTTGGTAGTAGCTGTAGTACTCGAGG
GAATGATTGCCGAACAGCAGTGATTGGAGGAGCCCCTGAAAGCAGCAGCG
ATGCCCCACCGCTACTTCGAGGATCAGCCGACGGAGGGACGATTGATTCA
GCAGCGGCGGACAATGGTCGTAGTTCAGCGACATTCTCTTCATCACCACC
ATCAACACAGGACGCCAACCTCGGGATTCCAGACCAGGAGAAGAAGGGCG
TTAGAATAAGAGCTCCTACAAACAGCGCAGCAGACGACAGAAGAATCTCG
CCAGGCAGTGTAAATACCAGTGTTACGGAAGACACAAGCTCGCTCGAAAG
GCGAGAAGTGCTGGCGGCGGCAGCGGGAGGGCTCCTCGCCATTGCCCACT
TCAATCTTGGAGTCGAGAGAGAACACCTGGGGCAGCTAGAAGCGGCGCTT
TCCTCGTATGAGGACGCCCGTGTTGCCGCCGATCAGCACCTGGGCCCCGA
GAGCCCCGTCGCAAAAGGGATTGGAGTGGCGCTCGAAAAGGCTTCCGCCG
CCGCCGTCGCCACCGCGTCCTACTCTAGCAAGCGCGCCGCCTGGCGCTCA
CGATCAGCGGTGTCGTCCTTCCCTTCCATAGGCAAACTGCAGTTCGGCCA
AAGAACACCAGATGGAGTCTCGAGCTTCGGCGGCCGGAGGGTATCCCCTC
GGCGACTACGGCACGAGCAGCAGTATGGCGAGGAAACCGCGAGGGACCTC
CTCGATCGCGCGTACTCTTGCGCGCGGCCTTGCCCCGCTCCGCCCCGCAC
GGATTCGTGGTCACGCCTCGGGCGCACGTTGTCCCCCCGATCGCCACAGA
CAGCCCCAGGGTCAGAGTCAGTAGGTGGCCCGCAGCGGGCGGGGAGATGG
ATGACATCGGACGCTCCCGCGGCCCGGCCAATGAGAACGCAGGGGTCTGC
GGCGAGAGGAGAAGGGCCAAGCCGGCCATGCAGCGTGGACGAGGATTTGA
GATGGCGAGCTCTTGCTTGCAAAAAGTGGCAGTGCAGTCCGAGGGAAGCT
TTGCACGCGCAGCAGGCAGCAAACCGACGGGTGGATGTCGGAGTAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:55794..57841+

>mRNA_P-littoralis_Contig130.12.1 ID=mRNA_P-littoralis_Contig130.12.1|Name=mRNA_P-littoralis_Contig130.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1764bp|location=Sequence derived from alignment at P-littoralis_Contig130:55794..57841+ (Pylaiella littoralis U1_48)
ATGGAGGCACGCAGTAGGCTGGGGGTCGACTACAGCGAGGATTCAGTAGA
CAAGGACATCTGGGATCTGAAGAAGGAAGGAAAGGACGAGGATGCTATCC
TTGCGGCGGAGGAGAGCTTGCATCGGGTCGTGGTCTCTTATGGTCCCAGC
TCTGAAGAGACGCGCAGAGTCGCAACAGACCTCGTATTAGCCTACAATCA
CCTCTCCATGAAAAGGCTAGCTGAAAATAACATCAAGGGCTCTCTCTGCC
TGCTACAGAAAGCGAAGCTCCTCACTAGCCGGGATCAGTCTTTTCTTGGC
GACGCCCGGCTTCAGGCTCGCGCGCTGACTCTGAATAATCTCGGTTGTCT
GATGAAGAAGTGGGGAAAGGTGCGCGAGGGTGTAAAGTTTCTCGCGCGGG
CGATCAGAATAGAAGGCGAGGTTCCCGGGGGCGCGGATAATCCGGCCGGT
ACGCACGTAAATATGAGCGCCGCTCTGTCAACCCTTGGGCTCCACCGTGC
GGCCGCCGTTCACGCTGGCCACGCCATTGATCTCGCGTCTCAAGCGATAA
TGGGGCAAGCAGCAGGCTCCTTAGTGCCCTCGGGGGAGGACTCCGTCACC
GCAGGAGGGGGTCATGTTGGCGCCGCCGGACCAGGACTCGTAGAGGAGGG
TGGATCTACGTCAGTTGATGCTACCATTGCTGACGATGCTGTTGGTAGTA
GCTGTAGTACTCGAGGGAATGATTGCCGAACAGCAGTGATTGGAGGAGCC
CCTGAAAGCAGCAGCGATGCCCCACCGCTACTTCGAGGATCAGCCGACGG
AGGGACGATTGATTCAGCAGCGGCGGACAATGGTCGTAGTTCAGCGACAT
TCTCTTCATCACCACCATCAACACAGGACGCCAACCTCGGGATTCCAGAC
CAGGAGAAGAAGGGCGTTAGAATAAGAGCTCCTACAAACAGCGCAGCAGA
CGACAGAAGAATCTCGCCAGGCAGTGTAAATACCAGTGTTACGGAAGACA
CAAGCTCGCTCGAAAGGCGAGAAGTGCTGGCGGCGGCAGCGGGAGGGCTC
CTCGCCATTGCCCACTTCAATCTTGGAGTCGAGAGAGAACACCTGGGGCA
GCTAGAAGCGGCGCTTTCCTCGTATGAGGACGCCCGTGTTGCCGCCGATC
AGCACCTGGGCCCCGAGAGCCCCGTCGCAAAAGGGATTGGAGTGGCGCTC
GAAAAGGCTTCCGCCGCCGCCGTCGCCACCGCGTCCTACTCTAGCAAGCG
CGCCGCCTGGCGCTCACGATCAGCGGTGTCGTCCTTCCCTTCCATAGGCA
AACTGCAGTTCGGCCAAAGAACACCAGATGGAGTCTCGAGCTTCGGCGGC
CGGAGGGTATCCCCTCGGCGACTACGGCACGAGCAGCAGTATGGCGAGGA
AACCGCGAGGGACCTCCTCGATCGCGCGTACTCTTGCGCGCGGCCTTGCC
CCGCTCCGCCCCGCACGGATTCGTGGTCACGCCTCGGGCGCACGTTGTCC
CCCCGATCGCCACAGACAGCCCCAGGGTCAGAGTCAGTAGGTGGCCCGCA
GCGGGCGGGGAGATGGATGACATCGGACGCTCCCGCGGCCCGGCCAATGA
GAACGCAGGGGTCTGCGGCGAGAGGAGAAGGGCCAAGCCGGCCATGCAGC
GTGGACGAGGATTTGAGATGGCGAGCTCTTGCTTGCAAAAAGTGGCAGTG
CAGTCCGAGGGAAGCTTTGCACGCGCAGCAGGCAGCAAACCGACGGGTGG
ATGTCGGAGTAGCC
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