mRNA_P-littoralis_Contig13.192.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.192.2
Unique NamemRNA_P-littoralis_Contig13.192.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.192.2 vs. uniprot
Match: D7FM03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM03_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.130e-15
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:  467 AENEHDDSFDFPDGETDAEASLAKTAQRRDWIRRKDAAMDKFRRDCETEVERMKTALEEHVGELEAMLDEELIHALDGSIADRIEDNHREKARARKVES 763
            A+N  DD F   D E DAE + AK  Q   W+R+K  A+ +FRRDCE EV+R+K  +EEHVG+LE  L  E+  +LDG +  +IE NHR+K   ++  S
Sbjct:   27 ADNVDDDRFQLVDAEEDAERTKAKMDQCEAWVRQKQEALARFRRDCEAEVKRIKAVMEEHVGQLELKLKGEMQVSLDGFVEAKIEHNHRDKRPGKRTRS 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.192.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM03_ECTSI6.130e-1546.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:1007327..1014366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2101
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000380.1
Cds size771
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.192.2prot_P-littoralis_Contig13.192.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 1008608..1014317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789586.628515-UTR-P-littoralis_Contig13:1007326..10086071680789586.628515-UTR-P-littoralis_Contig13:1007326..1008607Pylaiella littoralis U1_48UTRP-littoralis_Contig13 1007327..1008607 -
1680789586.7056344-UTR-P-littoralis_Contig13:1014317..10143661680789586.7056344-UTR-P-littoralis_Contig13:1014317..1014366Pylaiella littoralis U1_48UTRP-littoralis_Contig13 1014318..1014366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789586.6385837-CDS-P-littoralis_Contig13:1008607..10086081680789586.6385837-CDS-P-littoralis_Contig13:1008607..1008608Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1008608..1008608 -
1680789586.6485074-CDS-P-littoralis_Contig13:1009425..10095001680789586.6485074-CDS-P-littoralis_Contig13:1009425..1009500Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1009426..1009500 -
1680789586.65845-CDS-P-littoralis_Contig13:1010376..10104931680789586.65845-CDS-P-littoralis_Contig13:1010376..1010493Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1010377..1010493 -
1680789586.6717372-CDS-P-littoralis_Contig13:1011992..10120781680789586.6717372-CDS-P-littoralis_Contig13:1011992..1012078Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1011993..1012078 -
1680789586.6818721-CDS-P-littoralis_Contig13:1013022..10132631680789586.6818721-CDS-P-littoralis_Contig13:1013022..1013263Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1013023..1013263 -
1680789586.6910138-CDS-P-littoralis_Contig13:1014066..10143171680789586.6910138-CDS-P-littoralis_Contig13:1014066..1014317Pylaiella littoralis U1_48CDSP-littoralis_Contig13 1014067..1014317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.192.2

>prot_P-littoralis_Contig13.192.2 ID=prot_P-littoralis_Contig13.192.2|Name=mRNA_P-littoralis_Contig13.192.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp
MRRPSRGDGVGVGGPASGGRPGAERPGVTGVAGEDDEQGGVTRGREAGRF
SGSNGESGAEAQARGRGVELPARPGARPVAAKERPALATGDSGHLSLPAD
HSQQQRQQQQQQQQQQAQIEQRRRRRRRQQQQQLDDSGRAENEHDDSFDF
PDGETDAEASLAKTAQRRDWIRRKDAAMDKFRRDCETEVERMKTALEEHV
GELEAMLDEELIHALDGSIADRIEDNHREKARARKVESLLSAFFSDPRVP
KVQRVA*
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mRNA from alignment at P-littoralis_Contig13:1007327..1014366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.192.2 ID=mRNA_P-littoralis_Contig13.192.2|Name=mRNA_P-littoralis_Contig13.192.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7040bp|location=Sequence derived from alignment at P-littoralis_Contig13:1007327..1014366- (Pylaiella littoralis U1_48)
GGCGAGGGGAAGAGGGGGTGCGTTGCGCCCCATCCCCGGGAATACCGGGA
TGCGCCGCCCGTCGCGCGGCGATGGTGTTGGTGTTGGCGGCCCCGCTTCA
GGTGGAAGGCCTGGCGCAGAAAGGCCCGGGGTGACGGGAGTAGCCGGAGA
GGACGACGAACAAGGAGGCGTCACCAGGGGGAGGGAGGCGGGGAGGTTTA
GCGGCAGCAATGGGGAGAGTGGCGCTGAGGCTCAAGCTCGAGGCAGAGGG
GTAGAGCTTCCTGCTCGCCCTGGGGCAAGGCCTGTTGCTGCCAAGGAAAG
GTATGTGTAAAAGCTAAAGTTTGTTGTTTTTGCGAAGAGAGGGATCTGTC
TGCGACAAACGCTCCCGTGGGAGTGTATCTCTCAACGTATTTTTCGTTTA
AGAAAGGGATCTGTCTTCGACAAACGCTCCTGAAGGAGCGTGCCTGCATA
AAAGTCACCTTCACATTTTTTTAGTAGAACCAACGAGGTCAAAGGCCAGA
TGGTCTTGATGCTCTCGAAAAAACTGTCGGCACCGCACGGCCTGACCTAA
AACAGTTAATGATCAGCATGTCATTTGTTTAATGCCCGGAACAATTTCGC
TATTTTGCGAACAGCGAGAACATACAGTAAGAAATCGAACAGAAAAGTTT
GCTCACGCTCTGGGCTCGGTTCCATTGGGCGTGATTATGATTGGCTGGAT
TTGAGTCCGCGCCTGGCTGTCTGCGCTGCGGAGCGTAGACGCGGAGGCAT
TCGTCCGTCCACGCTGTTCATGCACGAGCTGTACTTGTAAAAAAGCCACG
CTTGTTAGCCCCCACGTGTGTTTACGACGCGAATGTTGCGCGTTTCTTAA
GCAACAGCAGTACCCTTTTGCCATGCTCCTCGCCTTGAAACGCTGACGCC
GACAAAACAGCGAAGGTTTGCGGGCGACACCCACTCCTGTGCGCTTCGAG
AAAGTCCTCGAAGAACGATTCTCGTTTGGACCGTGAGGCGCACTTTGGGC
GTACGAGTAGTTTTCGCGGGGTGTTTTTGCTGCTGCTGCTGCTGCTGCTG
CTGTACATACACGTAGTGCTTTGACATTGTGATGTTTCCACAAACATTTC
CAGGCCCGCTCTGGCAACCGGGGACAGCGGTCACCTCAGCTTACCAGCAG
ATCACTCGCAACAGCAGCGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAA
GCGCAGATAGAGCAGCGGCGGCGACGGCGGCGGCGGCAGCAGCAGCAACA
GCTCGACGACAGCGGCCGCGCGGAGAATGAACATGATGATAGTTTCGACT
TTCCCGACGGCGAAACCGACGCGGAAGCTTCTCTCGCCAAAACGGTAAAG
TGACTAACCGACAGAGCTATCGCTTGTGACGTACGGGTGGACTGCCCTCC
CCCTTCCCCACTCGGGGGACTATCTCGACGCAACTTTTTAATTTTCTCAG
CGGGGTACATATCTCGGGGCGACATTTGAGGCGTCGCGTAACGAGCTTCC
CGAAATCATTGTATCCGGCTTCGGCACCGAATACAGAGAGCTTGGGCCGT
CAAAATTCGTCGGAACGCTGCTTCCATACTACGCCTACTACTGGTTCAAA
ACCTCTGACGCTATTTTTTTTTGGAGGAGGGAATGACAACGCTCTGCAGA
TTGCTACGCTAACGCTTCACTTGCTACCCCCTTCGAGCAGTCTTAAGAAA
GCCCCGGGGTCGCCGAAACCGGTGTTTATTGGGACGAAAACGAATGATTC
GAGTTTTTCGCGGAATGGCCGTGTGTGCGACCCGCTTCTCGCAGCGAGGC
ACTCGCAATTTCTGCGCGTATGCAGTCATTTCTTCGAAGTGTGTATCTCC
CCCCCGGATCGTTCTCGGGGTTTGGTACGTGTGCCCGGGGATGCCAACGC
TTGTGCCTGCTTGCTTCGAGAAGACAATGAAGGCAGTCTTCGAGCCACCC
GCGGGCACGCCATGGGCACGCAGAACCCCCCCCCCCCCCCCCCCTGAAAA
ATGTCGTGTTTCATCATTCCCCGGGGTGAGGCCGTCACTCATCTGCCGCC
CCAAGCCCTCTTGTCGTTTCGTTCCGATTCCCGGATTCCCGGAGAGACGC
GAGCGGACGGCGGTACAATCCCTTTCGATTTACAACACAATTGCACCGCA
TGTGCTTTACTGCACTTGTAGCTTTTTTCGTTCTCCAAGACTACTGCTGT
ACGGCACACGCACATGAAAGCAAAACAGAGGTCTTGCCGATGCCTCTTAC
CCTGCCTCGCGTGACTGTTATTTATGCTGCTGCCGCAGGCCCAGCGTCGG
GACTGGATTCGGCGTAAGGACGCAGCCATGGACAAGTTCCGCAGGGATTG
CGAGACGGAGGTCGAGCGCATGAAGTGAGGCAGGCGTTTTTGCGCTATGA
TACTGCTGCAGAAGTGTTCTCTTGCGCGCATGAGTGTTCCACAGCCTGCC
CCCTTGAGCCTGCAGGCATATGACTGCTGCGGTAGTGCTCTTTGGCGCGC
ATGAGTGTTCCACAGAGTGTTGCTTGGTGGCGTATTGAGAGCGGGCACAT
ACTGCCGCGGTAGTGTTCTTCTGCGCGTGTGAGTGTACCACGGAGTTTTG
CTTGGTGGCGCCGTGCGAGCGGGCTCACAACGTGGGGTTTACAAACCTTC
CGGGCCCGAATCTACTCCGCTGCGACCCAAATGTATTTGGGGGGGGTGCC
TCTGCGTGGTTTCTTCGCTGCTGACCTGCAGGCTTAAGACATATCCGGCT
GGTGTTTGTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGT
CTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAA
TAAAAATAAAATATATGGACTATGATCACCCACAGTCAAATCAGATAGGG
TACCGTTGGGGTACCATCTGTGGTGGCCAAAGTACAAAACAAAATGCAGA
AAAAAATAACAGGCTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAA
ACAAAAAATTACCAAGACAAACCTCAACCATAACCATATACTTCGAAGTA
CTTCGTACATCGAGCCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGC
AAACCAGGGCGATGGTCCACTAACTATAAGATCAATAGACGAAAGACAAA
AAAGAAGAAAAAAGAAGAAGATACGAGGAGGGCACAAAGACTGAGGGAGT
GCACTCGTACACAAACACAACAAACAGGCCGCCAAACAAAGAGGAAGCAG
GGGAACGAAAAGGGAAAAGAAAAAAAGAGACAAAGAGGAATAAAATACAT
GCATCGAGAGTGCAGAGGGAGGACCGGAAGTACCGGAAGTCGGGGGGGGG
GGGGGGTGGATAAAAATAAAATAAAAGGCATGCAATCAATCGCAAACATG
TCTTACCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCA
TGCCTCCTGCTACTGGCACCACCGTACCCAGTTGTTTCTGCCCCACATCT
TTGGCAGCAGCTACACCACCATTCCGCCCTACAGGTTTTCCACTCCGTAT
GACGCGCAAACATGAGATAATGGTGGCGCCAGACACGTACGTACGTAAGT
CGATGAAGTTTCCGAAGATGACCCTGAACACGGATAACTAATCTAGGGAC
TCAGTGTATTTTGCTGCTGATGGTGGCGGTGGTGGTGGTGGTGGTGGTGG
CGGCGGCGGCGGTGGTTGTGGTAGTGTTGGCTGTGTTGATGTCCAAATAA
AATACCGTTTGGACCTCTCGGCGAGAGGCCACCCGCAAACACGCAGCCAA
TGTCGGAGGCACAGGTCCGCGGATCAAAGTATAACTAAAAACATCATTTC
TTGCGTGTTGTGTTCTCTCTCAGGACGGCGCTGGAGGAACACGTCGGTGA
GCTGGAGGCCATGCTGGACGAGGAGCTGATACATGCTCTGGACGGCTCCA
TCGCCGACAGGATCGAGGACAACCACAGGGAGAAGGCCCGGTAAGTACCA
CGCCTCTAAAATCTTACGTCCCCTCTTCCTCAGAGTACTGTCTTTCCCCG
AAAAAGAAAACGCAACTGCTGATGATGTGTCAAACAACCAGCCTCCGTCT
GGCCAACAACGATGAAGTCGCTGTATGTTTCATATACAGTACCTGAATGG
GTTCGAGAAATTCCAAGCCGTCCCGGCCTCCCTATAAGTGATGAGGTCTA
ATCCTATACACCAAATTGTCAGCTGACAATGTGGTGTATGTTGTAGGATT
TGCCCCTTTCACTATGCCTCCAAATATTTCCGTACGCGTAGCCCATAAAA
GATTCAAGAACGACCGTGTACGTAGGTACCTCGTCTGCGAGTATAAACTC
GTCTACAAGCCAGCCAAGTCGACGACGTGGTACGATAAACTCTGCTTGAG
CTCACGCACACGCCGAACAACCCACGTATAGATATTTTCTTGAGCTCACG
CACACGCCGAACAACCCATGTATAGACATTTTTCATGTGTCCATTTATGG
AGGAGGTGCGCATCCGTATGCAGTGCCTGAAACTGAAACTTGGAGCCGCC
AGAATAAAATTTGATAGTTTCGGCTCGTTGTGCCAGGTACGCGGGATTGA
ACTGGGTATCATATCGGTTGGTTCTGAAGGGCTCTGATGATCTAAAGTCC
GTCTCTCTCTCTCTGTCTCTCTCCCTCTGTTTCTCTGTCTCTCCCTCTGT
CTCTCTTTCCCTCCACATATATATATACTTCGTATATATATTTCTCCCTC
CCGATCGCTCTCTCTCCCTCTCTCTCTCCCTCTCCTCCTCTCGCTCTCTC
CCTTTCTCCCCCCCCCCCTCTTTCTCCCTCTCTCTCTCTCTGCATATCTC
CTTCTCTCTCTCTCAGGGCCCGGAAGGTCGAAAGTCTCCTGTCGGCGTTC
TTCTCCGATCCTAGGGTTCCGAAGGTGCAGCGTGTCGCGTGGTGAGTACT
GTACTGGTATACGGCAGTGCCCATTGGCCCCAATGAACCGTAGGATGAGG
GAGTCAACAAAGGAGCTAGTAGAATACATACAGTGGGAGGAAGGTTATCC
TCCGGGCGCGACACCGTTTCGAAATCATTTCGCCGTGAGGAGACAACACA
CAAACATGGAGGTGCGAGTAGCACTCGGAGCACTGTAGTGCCAACAAAAT
GATGAAAGAGCGAGAACACAGCAAAGCAGCAGAAGCAGGCTGCGGAATGC
CAATGATGGCGAGAGTGCTCGATGAAGTCGTCATCGGTCTGAGGGGGGAA
GAAACCTCCCCCGTGCAATTTTTTATTTTATTTCTCGGCAAAAGAGGGGA
ATTGCGCCTTGTGCACTGGCATGGACTAGCTTGCCATCCACCGCTTCAGA
GATACATACTGCCGGGGCTTCAGAGCGTTTTTTCTATAACGGGGTTTTCA
TTATCCTAACCGCACGGAGTATTCGAAAAGCACGCCGAGTTGTGAACAGC
TCAATCTCCAGCAGCTAGCCCCTACGGGCACAGAATGACCTCGCGCATTC
GTCGTTGGTGTGTGTGCATAGACTTGAAGTCATGGTGCTTCGTAGATCCC
AAAGGATTCCGTAGATTGCCCTGTCGATTTCACCAAATAGATGGTGAATT
AATCCAGACCGTCTGTACCGCGCTTTCTTCCCCCACGTCTCCCTAACAAG
TTTTGCAACAACGCAGCAGTGTAGGATAGTCACGATCAAGGCGTGTTTTT
GGGGGCACGAGCGACCCGCTTTAACGCGCTCGTACTCCCTTCGCACGAAC
TTCTCCAGACACGAAAGGCATTCGCGCCGCGCCCTGCCGTGTAGGCTCCA
GCGAAACCGGATGTACGCGTGCGACGCTTCAGCGGGTTGATTTCGCGGTA
TGCGGCAACGGTTCAAGTTCCACCCGGAACACCAGTGAGCACTTCGGATT
GCTGATGCGTACGCAGTGCAAGCCGGAAACCGAGTTTCAGGCCAAGAAGA
ACCTAAACGCCTCCATATGCATCAAGGAAACAAGCTCTTTTTTCTCAGCC
GGAACCAGCTGTTCCATTTTGACATTCTTCACAACAATCCGTCATGTTGG
CACGCAGTACAATACGATATGTTCGTACTTCGGAGTATTCATGCATTTTT
GTCACTCTTCACAACTGTACCACGTAGAATCCAACGGCGTGATGCACAAG
CGCTCACAAGGAGCGTGTAACCTATAGTCAGGCCAGGTACCCGGCGAGGA
AATGCCGCGGTATGCTCTGTCTACGCGCAAAACGTACGTACGTGAGATGC
AAACAAGAACGAAACACGGAGGCGTTTGTGACTTCACTGTAGGTTTAGAT
TTAGATTTGGAGTACGCCTGGGATCCATCACTGTGTAGATTTACATTTAG
ATTTGGAACGCACCCTAGGAGCCTCAGCTGTAGATGTAGATATAGATTTA
GATTTGGAGTGCACCTGGAAGCTACTGAAGGTTTAGATTGGATTTGGAAA
GCGCCCTGTGGGATCGCGCTGCTCCGCACACCAGGGCCGATGATATGTAG
GAATGCCTCACATGTTGCGTTTGAGCTACAGCAGTACGTGTCGGTTGCAT
GGTCTCGTCCGTTGATACTATTCCGCCAGGGGAACAACAGGTGAATCGTA
GTTCTCTGTGGGTACGTGTGTGATTCATTTTTGAACAGACTCTGTGGACT
TTTATAGGCGCAGCTGGTACTATATGTGGGGGGGATGCGTGGATCCTCCT
AGACGCGTGTGGGGATTCCGCCGTTACCGTTTGCGTCGGTTCAACATCGG
CCCCACGGGTAGTTAACGCAACGTCTTGCAGATCGACTCGAGAGCAGGGC
AATGGGCGTTCAGGGTCGGCCTTTGAGGAGCCGCAAGCCTTGTTCTTGCC
GGCTGTGACCCCCTCGCCAACAGTCGTCCATGTCGAACCATGCGTGTGTG
CATGCGTGTGTGTGGCGTTGCCATGATGGCGTTTTTGGCATTGGGGCTCT
GAACGGCTGAAATTTGCCCCCCCCGTCAATGATAATACTTGTTTCCTGCC
TGCTTTTCTTCATGTCAAGAAAATGAGCATCCTCGTTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:1007327..1014366-

>mRNA_P-littoralis_Contig13.192.2 ID=mRNA_P-littoralis_Contig13.192.2|Name=mRNA_P-littoralis_Contig13.192.2|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig13:1007327..1014366- (Pylaiella littoralis U1_48)
ATGCGCCGCCCGTCGCGCGGCGATGGTGTTGGTGTTGGCGGCCCCGCTTC
AGGTGGAAGGCCTGGCGCAGAAAGGCCCGGGGTGACGGGAGTAGCCGGAG
AGGACGACGAACAAGGAGGCGTCACCAGGGGGAGGGAGGCGGGGAGGTTT
AGCGGCAGCAATGGGGAGAGTGGCGCTGAGGCTCAAGCTCGAGGCAGAGG
GGTAGAGCTTCCTGCTCGCCCTGGGGCAAGGCCTGTTGCTGCCAAGGAAA
GGCCCGCTCTGGCAACCGGGGACAGCGGTCACCTCAGCTTACCAGCAGAT
CACTCGCAACAGCAGCGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAAGC
GCAGATAGAGCAGCGGCGGCGACGGCGGCGGCGGCAGCAGCAGCAACAGC
TCGACGACAGCGGCCGCGCGGAGAATGAACATGATGATAGTTTCGACTTT
CCCGACGGCGAAACCGACGCGGAAGCTTCTCTCGCCAAAACGGCCCAGCG
TCGGGACTGGATTCGGCGTAAGGACGCAGCCATGGACAAGTTCCGCAGGG
ATTGCGAGACGGAGGTCGAGCGCATGAAGACGGCGCTGGAGGAACACGTC
GGTGAGCTGGAGGCCATGCTGGACGAGGAGCTGATACATGCTCTGGACGG
CTCCATCGCCGACAGGATCGAGGACAACCACAGGGAGAAGGCCCGGGCCC
GGAAGGTCGAAAGTCTCCTGTCGGCGTTCTTCTCCGATCCTAGGGTTCCG
AAGGTGCAGCGTGTCGCGTGA
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