mRNA_P-littoralis_Contig13.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.139.1
Unique NamemRNA_P-littoralis_Contig13.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:693498..694224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_002120.1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.6469424-CDS-P-littoralis_Contig13:693497..6935911680789584.6469424-CDS-P-littoralis_Contig13:693497..693591Pylaiella littoralis U1_48CDSP-littoralis_Contig13 693498..693591 -
1680789584.656213-CDS-P-littoralis_Contig13:693896..6939511680789584.656213-CDS-P-littoralis_Contig13:693896..693951Pylaiella littoralis U1_48CDSP-littoralis_Contig13 693897..693951 -
1680789584.667536-CDS-P-littoralis_Contig13:694082..6942241680789584.667536-CDS-P-littoralis_Contig13:694082..694224Pylaiella littoralis U1_48CDSP-littoralis_Contig13 694083..694224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.139.1prot_P-littoralis_Contig13.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 693498..694224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.139.1

>prot_P-littoralis_Contig13.139.1 ID=prot_P-littoralis_Contig13.139.1|Name=mRNA_P-littoralis_Contig13.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
VSGGERDQPPRHDRRRHLSGLSRDFDHLFNKARKKGLIRLRARETRHGVE
AAPRLRSIEARRKTSRRWKLRPPSPRSSPSRRRRTASTIVYRRTSL*
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mRNA from alignment at P-littoralis_Contig13:693498..694224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.139.1 ID=mRNA_P-littoralis_Contig13.139.1|Name=mRNA_P-littoralis_Contig13.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=727bp|location=Sequence derived from alignment at P-littoralis_Contig13:693498..694224- (Pylaiella littoralis U1_48)
GTATCGGGCGGCGAGAGAGATCAGCCACCGAGACACGATCGACGACGCCA
CCTTTCGGGTTTGTCTCGGGACTTTGACCACCTTTTTAACAAGGCGAGGA
AAAAAGGGCTCATCAGGCTCAGAGCCAGAGAGACAAGGCATGGTTGGAAA
TAGGCGTACAAGGGGTAATTTTATTTTTCTTTCCTGTACCACAATCCACA
AGTCAAACACCGTGTAATGCCCGACCCCTTGTTTGTTTTCCAGACTCCGC
GGGAAGGGAGGGGGCGATGCAAGGGGTAGAAGCTGCGCCACGTTTGCGAT
CGATCGAGGCCAGAAGGAAAACCTCCAGGTGAAACCAGTTGACACCACAT
ACGCCCCCGTCCTGTTTTCCACGGCAAGCCCCCGCAGGCGCAGTGCCGGG
CCGACAAATAACTGAGTTTTTTTGGCCAGCCGTAGCGCGCCAAAGTAGCA
TGAACTTGATGATCGGCACCGCCTGCCCCACTTTACCCCAGACTATTTCG
ATGGCGACCACACACCCCGAAATGCGCCATCGCTAGCCAACCGTTGCTGT
ACCATCCTCTGTTTCGGCGGCGATCAATGGTCCGGATTGGCTCTACTGGA
ACAACTTAGCCTTGCTCGCTGGAATTTGAACAGGCGCTGGAAGCTACGCC
CGCCGTCGCCCAGATCGTCACCGTCGAGGAGAAGACGGACGGCTTCGACC
ATTGTATACAGACGTACCTCGCTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:693498..694224-

>mRNA_P-littoralis_Contig13.139.1 ID=mRNA_P-littoralis_Contig13.139.1|Name=mRNA_P-littoralis_Contig13.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig13:693498..694224- (Pylaiella littoralis U1_48)
GTATCGGGCGGCGAGAGAGATCAGCCACCGAGACACGATCGACGACGCCA
CCTTTCGGGTTTGTCTCGGGACTTTGACCACCTTTTTAACAAGGCGAGGA
AAAAAGGGCTCATCAGGCTCAGAGCCAGAGAGACAAGGCATGGGGTAGAA
GCTGCGCCACGTTTGCGATCGATCGAGGCCAGAAGGAAAACCTCCAGGCG
CTGGAAGCTACGCCCGCCGTCGCCCAGATCGTCACCGTCGAGGAGAAGAC
GGACGGCTTCGACCATTGTATACAGACGTACCTCGCTGTAG
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