mRNA_P-littoralis_Contig13.134.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 8.490e-132 Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 355 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 4.410e-129 Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 579 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 382 bits (982), Expect = 6.860e-128 Identity = 187/222 (84.23%), Postives = 203/222 (91.44%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+ EAIFLRYLW IF LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 342 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE) HSP 1 Score: 384 bits (987), Expect = 6.460e-123 Identity = 187/222 (84.23%), Postives = 204/222 (91.89%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKS TLSSTEAEYVA+++G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 883 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 1.790e-122 Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 1655 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 357 bits (917), Expect = 4.510e-121 Identity = 169/221 (76.47%), Postives = 200/221 (90.50%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T+ +GITFQRG GG +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+G+KEAIFLRYLW+FIFPD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+AF HR+FVMN+
Sbjct: 125 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHIVMYIRCTSAYGITFQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE) HSP 1 Score: 375 bits (962), Expect = 3.500e-120 Identity = 181/221 (81.90%), Postives = 201/221 (90.95%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
FR LVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLM+VR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLR+LW F+FP DVGCT V EDNVGA +LAS A+TPNSKHIDI+HHFIRERVARGEF+VVH RS LQRADFLTK LPK+ FCAHRDFVMNI
Sbjct: 771 FRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFVMNI 991
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE) HSP 1 Score: 347 bits (891), Expect = 9.460e-119 Identity = 170/204 (83.33%), Postives = 186/204 (91.18%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTK 612
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VM AGAC+MYL R QKSVTLSSTEAEY+A+ +G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHV S LQRADFLTK
Sbjct: 21 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMIAGACVMYLCRMQKSVTLSSTEAEYMAMFDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVPSDLQRADFLTK 224
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 350 bits (899), Expect = 5.270e-110 Identity = 167/221 (75.57%), Postives = 197/221 (89.14%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T +GIT QRG GG +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+G+KEAIFLRYLW+FI PD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+AF HR+FVMN+
Sbjct: 893 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE) HSP 1 Score: 314 bits (804), Expect = 1.430e-104 Identity = 157/198 (79.29%), Postives = 170/198 (85.86%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAE-------------YVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAE YVA+++G+KEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFI ERVARG
Sbjct: 100 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEXXXXXXXXXXXXEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARG 297 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig13.134.1 >prot_P-littoralis_Contig13.134.1 ID=prot_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp MMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITback to top mRNA from alignment at P-littoralis_Contig13:662876..663636- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig13.134.1 ID=mRNA_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig13:662876..663636- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig13:662876..663636- >mRNA_P-littoralis_Contig13.134.1 ID=mRNA_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig13:662876..663636- (Pylaiella littoralis U1_48)back to top |