mRNA_P-littoralis_Contig13.134.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.134.1
Unique NamemRNA_P-littoralis_Contig13.134.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 8.490e-132
Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  355 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 4.410e-129
Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  579 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 6.860e-128
Identity = 187/222 (84.23%), Postives = 203/222 (91.44%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+  GITFQRG  GG+HMEL VDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+ EAIFLRYLW  IF  LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  342 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 6.460e-123
Identity = 187/222 (84.23%), Postives = 204/222 (91.89%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKS TLSSTEAEYVA+++G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  883 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 1.790e-122
Identity = 190/222 (85.59%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNIR 666
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 1655 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 4.510e-121
Identity = 169/221 (76.47%), Postives = 200/221 (90.50%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
            FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T+ +GITFQRG  GG  +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+G+KEAIFLRYLW+FIFPD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+AF  HR+FVMN+
Sbjct:  125 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHIVMYIRCTSAYGITFQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 3.500e-120
Identity = 181/221 (81.90%), Postives = 201/221 (90.95%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
            FR LVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLM+VR T+ +GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++G+KEAIFLR+LW F+FP  DVGCT V EDNVGA +LAS  A+TPNSKHIDI+HHFIRERVARGEF+VVH RS LQRADFLTK LPK+ FCAHRDFVMNI
Sbjct:  771 FRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFVMNI 991          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 9.460e-119
Identity = 170/204 (83.33%), Postives = 186/204 (91.18%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTK 612
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG  GG+HMEL VDSDFA+KATDRRSVSGA+VM AGAC+MYL R QKSVTLSSTEAEY+A+ +G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHV S LQRADFLTK
Sbjct:   21 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMIAGACVMYLCRMQKSVTLSSTEAEYMAMFDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVPSDLQRADFLTK 224          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 5.270e-110
Identity = 167/221 (75.57%), Postives = 197/221 (89.14%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALPKDAFCAHRDFVMNI 663
            FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T  +GIT QRG  GG  +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+G+KEAIFLRYLW+FI PD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLTK LPK+AF  HR+FVMN+
Sbjct:  893 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113          
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 1.430e-104
Identity = 157/198 (79.29%), Postives = 170/198 (85.86%), Query Frame = 1
Query:    1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAE-------------YVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
            FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T   GITFQRG  GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAE             YVA+++G+KEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFI ERVARG
Sbjct:  100 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEXXXXXXXXXXXXEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARG 297          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWG1_9PHAE8.490e-13285.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE4.410e-12985.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5L3_9PHAE6.860e-12884.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP2_9PHAE6.460e-12384.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE1.790e-12285.59Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L5Q2_9PHAE4.510e-12176.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAQ1_9PHAE3.500e-12081.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPR3_9PHAE9.460e-11983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCD8_9PHAE5.270e-11075.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHE6_9PHAE1.430e-10479.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:662876..663636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size761
Max annot lvl4751|Fungi
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.76e-43
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size648
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.4609275-UTR-P-littoralis_Contig13:662875..6629671680789584.4609275-UTR-P-littoralis_Contig13:662875..662967Pylaiella littoralis U1_48UTRP-littoralis_Contig13 662876..662967 -
1680789584.485-UTR-P-littoralis_Contig13:663615..6636361680789584.485-UTR-P-littoralis_Contig13:663615..663636Pylaiella littoralis U1_48UTRP-littoralis_Contig13 663616..663636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.4746425-CDS-P-littoralis_Contig13:662967..6636151680789584.4746425-CDS-P-littoralis_Contig13:662967..663615Pylaiella littoralis U1_48CDSP-littoralis_Contig13 662968..663615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.134.1prot_P-littoralis_Contig13.134.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 662968..663615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.134.1

>prot_P-littoralis_Contig13.134.1 ID=prot_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGIT
FQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKS
VTLSSTEAEYVALAEGLKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVY
LASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTKALP
KDAFCAHRDFVMNIR*
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mRNA from alignment at P-littoralis_Contig13:662876..663636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.134.1 ID=mRNA_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig13:662876..663636- (Pylaiella littoralis U1_48)
TTTCGGTCGTTGGTGGGGCACATGATGTGGCTGGCGAATCAAACTCGTCC GGATATTCTCAACGCGGTGCGGGCCGTGGCGAGGTATTCTCACGCGCCGA AGCTGGTGCATTGGCGGGCGGCGTTGCATGTCTTGATGTATGTTCGGGGA ACCACTGATTTCGGCATCACTTTTCAGAGAGGTGTACCAGGAGGAGAGCA CATGGAGCTTTTTGTCGATTCGGATTTCGCCAGCAAGGCAACCGACCGGC GATCTGTTTCTGGTGCGGTGGTGATGTTTGCTGGTGCATGTTTGATGTAT TTGTCTAGGACGCAAAAGAGCGTCACACTCTCATCGACGGAGGCGGAGTA CGTAGCCCTAGCTGAAGGGTTGAAGGAGGCGATTTTCTTGCGGTATCTCT GGAATTTTATCTTTCCGGACCTCGATGTAGGGTGCACTTTGGTCCACGAG GACAACGTCGGGGCCGTTTACCTGGCAAGCAATCCGGCCACAACCCCCAA CTCAAAGCACATCGACATCAAGCACCATTTCATTCGCGAACGCGTGGCAC GGGGGGAGTTCAGGGTAGTTCACGTACGTTCTGCGTTGCAGCGTGCTGAT TTCTTGACCAAAGCACTGCCCAAAGACGCTTTTTGCGCGCACCGTGACTT TGTGATGAACATTCGGTGATTTGTGCGTGTTGCGTTGTTCGCCCTGAGTT TCTAACCGTTCTGCGGCTATCGTCTCTGTTTTTGGCACCGCAGCATGTAT GTTGTTTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:662876..663636-

>mRNA_P-littoralis_Contig13.134.1 ID=mRNA_P-littoralis_Contig13.134.1|Name=mRNA_P-littoralis_Contig13.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig13:662876..663636- (Pylaiella littoralis U1_48)
ATGATGTGGCTGGCGAATCAAACTCGTCCGGATATTCTCAACGCGGTGCG
GGCCGTGGCGAGGTATTCTCACGCGCCGAAGCTGGTGCATTGGCGGGCGG
CGTTGCATGTCTTGATGTATGTTCGGGGAACCACTGATTTCGGCATCACT
TTTCAGAGAGGTGTACCAGGAGGAGAGCACATGGAGCTTTTTGTCGATTC
GGATTTCGCCAGCAAGGCAACCGACCGGCGATCTGTTTCTGGTGCGGTGG
TGATGTTTGCTGGTGCATGTTTGATGTATTTGTCTAGGACGCAAAAGAGC
GTCACACTCTCATCGACGGAGGCGGAGTACGTAGCCCTAGCTGAAGGGTT
GAAGGAGGCGATTTTCTTGCGGTATCTCTGGAATTTTATCTTTCCGGACC
TCGATGTAGGGTGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTTAC
CTGGCAAGCAATCCGGCCACAACCCCCAACTCAAAGCACATCGACATCAA
GCACCATTTCATTCGCGAACGCGTGGCACGGGGGGAGTTCAGGGTAGTTC
ACGTACGTTCTGCGTTGCAGCGTGCTGATTTCTTGACCAAAGCACTGCCC
AAAGACGCTTTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTGA
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