mRNA_P-littoralis_Contig1298.3.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1298.3.2
Unique NamemRNA_P-littoralis_Contig1298.3.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1298.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1298contigP-littoralis_Contig1298:12194..15661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2839
Hectar predicted targeting categoryother localisation
Exons2
Cds size1662
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.520524-UTR-P-littoralis_Contig1298:12193..131271680789579.520524-UTR-P-littoralis_Contig1298:12193..13127Pylaiella littoralis U1_48UTRP-littoralis_Contig1298 12194..13127 -
1680789579.5507855-UTR-P-littoralis_Contig1298:15418..156611680789579.5507855-UTR-P-littoralis_Contig1298:15418..15661Pylaiella littoralis U1_48UTRP-littoralis_Contig1298 15419..15661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.5320873-CDS-P-littoralis_Contig1298:13127..131801680789579.5320873-CDS-P-littoralis_Contig1298:13127..13180Pylaiella littoralis U1_48CDSP-littoralis_Contig1298 13128..13180 -
1680789579.5423484-CDS-P-littoralis_Contig1298:13809..154181680789579.5423484-CDS-P-littoralis_Contig1298:13809..15418Pylaiella littoralis U1_48CDSP-littoralis_Contig1298 13810..15418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1298.3.2prot_P-littoralis_Contig1298.3.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1298 13128..15418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1298.3.2

>prot_P-littoralis_Contig1298.3.2 ID=prot_P-littoralis_Contig1298.3.2|Name=mRNA_P-littoralis_Contig1298.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=554bp
MRTKCNHVGCSKRASYGVAGTKTAELCSGHAKDGTVNVVSKMCNHRGCTK
HPSYGVAGTKTAEFCSGHAKDGMVDVVSKRCNHRGCTKQPSFGVAGTKTA
ELCSEHAKGGMVNVMNKRCNHRGCTKRPSFGVAGTKTAEFCSGHAKDGMM
DVIHKRCTHRGCTKHSSFGMAGTKTAELCSGHAKDGMMDVISKTCNQHGC
TKRASFGVAGTKTAEFCSEHAKDGMMDVMNKTCKHRGCTKRASFGVAGTK
TAEFCSGHAKDGMVNVKRKRCNHRGCTKRASYGVAGTKTAEFCSGHAKDG
MVNVKDKKRCNKKCSHRGCTKLAKSSAVGKEQAEVCNKHVKGGNVDVVNE
RCAQPGCTTSPRVGVTGGIRTFCTRHAGEGMADLTVPNNRAGVHSSNSGG
AQGHGGVAVEGDTAQRSGAGEKRRDRSPLSAQMETSPCRSKRSRQVPVHT
YEPKTPLETAANGDHTPVGLGSLSEPENAGVKAEVAVSSKSDPARSSPFE
AAAWVTSAENGSCGEPDGAVKREVGIPFPSKGAAAVGKLKSRRTKRVTGE
TRK*
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mRNA from alignment at P-littoralis_Contig1298:12194..15661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1298.3.2 ID=mRNA_P-littoralis_Contig1298.3.2|Name=mRNA_P-littoralis_Contig1298.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3468bp|location=Sequence derived from alignment at P-littoralis_Contig1298:12194..15661- (Pylaiella littoralis U1_48)
GCCAACGAACTCATGGCTTTTCGTGTAAAGATGACAGTCCTGACGAACAA
AGAGGACAGCTCGAGAGGACAGAGTCGACGGTAGTAGATGCACATCAAGT
GCGCGGCATGAGGACAGACAGATAGAGCGTGCAGTGGGATAGGAGCAGGA
CCGTGCCTCCCCGCAACCGCTGGTCTTTTTCAAAGATCTGTCCGCGGCGG
TCGAAAGCATAGCTCGCAAGCCTTCTCTTTTGCCCAAGGCAGGATGCGGA
CCAAGTGTAACCATGTTGGCTGCTCGAAGCGGGCGAGCTATGGTGTCGCA
GGTACCAAGACGGCGGAGCTCTGCTCTGGACACGCCAAGGACGGGACGGT
GAACGTCGTGAGCAAGATGTGCAACCACCGTGGGTGCACCAAGCATCCGA
GCTATGGTGTGGCAGGTACCAAGACGGCGGAGTTCTGCTCTGGACACGCC
AAGGACGGGATGGTGGACGTCGTGAGCAAGAGGTGCAACCACCGTGGGTG
CACCAAGCAGCCGAGCTTTGGTGTGGCGGGTACCAAGACGGCGGAGCTCT
GCTCTGAACACGCCAAGGGCGGGATGGTGAACGTCATGAACAAGAGGTGC
AACCACCGTGGCTGCACCAAGCGGCCGAGCTTTGGTGTGGCGGGTACCAA
GACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGATGGACGTCA
TCCACAAGAGGTGCACCCACCGTGGCTGCACCAAGCATTCGAGCTTTGGT
ATGGCGGGTACCAAGACGGCGGAGCTCTGCTCTGGACACGCCAAGGACGG
GATGATGGATGTCATCAGCAAGACGTGCAACCAGCATGGCTGCACCAAGC
GGGCGAGCTTTGGTGTGGCGGGCACCAAGACGGCGGAGTTCTGCTCTGAA
CACGCCAAGGACGGGATGATGGACGTCATGAACAAGACGTGCAAGCACCG
TGGCTGCACCAAGCGGGCGAGCTTTGGTGTGGCAGGCACCAAGACGGCGG
AGTTCTGCTCGGGACACGCCAAGGACGGGATGGTGAACGTCAAGAGGAAG
AGGTGCAACCACCGTGGCTGCACCAAGCGGGCGAGCTATGGTGTGGCGGG
CACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGA
ACGTCAAAGACAAGAAGAGGTGCAACAAGAAGTGCAGCCACCGTGGGTGC
ACCAAGCTAGCGAAATCTAGTGCTGTAGGTAAGGAACAGGCGGAGGTTTG
CAACAAGCATGTCAAGGGCGGAAATGTGGACGTCGTCAATGAGAGATGTG
CCCAACCAGGTTGCACCACCTCTCCTCGCGTCGGTGTGACCGGCGGCATT
CGAACCTTCTGTACGCGACATGCTGGAGAAGGCATGGCGGATCTCACCGT
ACCCAATAACCGAGCTGGTGTCCACAGCAGTAACAGTGGTGGCGCACAAG
GGCATGGCGGTGTGGCAGTGGAAGGGGACACTGCCCAACGTTCTGGTGCC
GGTGAAAAGAGGAGGGACCGCTCTCCTTTATCCGCCCAGATGGAGACATC
TCCGTGCAGGAGCAAGCGAAGCCGCCAGGTGCCCGTCCACACGTATGAGC
CTAAGACTCCACTCGAAACAGCAGCGAACGGAGACCACACTCCAGTTGGA
TTAGGTTCGTTGTCAGAGCCAGAGAATGCTGGGGTGAAGGCAGAGGTGGC
TGTCTCATCAAAGTCAGACCCCGCGCGATCTTCCCCATTTGAAGCAGCAG
CATGGGTCACCTCTGCGGAGAATGGTTCGTGTGGTGAGCCAGACGGTGCG
GTGAAGAGGGAAGTGGGAATCCCATTTCCGTCGAAAGGAGCGGCAGCTGT
GGGTGAGTCGAAAACAGTTGATTTTGATGCAGTAGCCGAGTCTCGCATGT
CGGATTGTCTCATCGCTGAGTTCTCGACTCGCCACTTGTTTCTTTGTCTT
TGCCATGTTGGGGGAGTGGAAAACGAGCAGGTCGTGTTTTCTTTGTGGTA
GATTTGCGTGATGCACCGGCAGGTTTAATACCTGTTCGAGCAGAACAGAT
GCCTATTGCACCGTACCCCTGCAGTGAGGGGAGCTGGTAACAAATTATTG
ACGTGCACATTTTACCTTCAAGGAGTCCCCGTGGGTGATGAGTCGAAACT
TGTATCATATGCCTCGGCGGTTTTATGCGGCGTAATACTCATGGTTTCGC
TGATCTCTCGCAACGTCGGTTTGATTGGCAATACTGCTTGGTGTTTTGTT
TTCCTCATGGAAAAATCAATTTTGTAACCTGTGTGTTTGCTGTTCAAGTA
AACTCTACGGCGGTGTGCGTGGATACAACACGCGTCCTGGTAGAAAAAGC
CGCGTCGTATTGGCGATAAACTTGAGAGCAGTGCATCAGCGGTTACGGCC
GTGGCAGACCCTACCGCTGCCGTCCTCATTTCAAGCTCCCAAGAATCCTT
GTTGATCTTCCAATGCGTTACTTTGAAACAGGTAAGCTAAAGTCAAGGAG
GACCAAGAGGGTAACGGGGGAGACCCGGAAGTAGCATGATTGCACCTTCG
GGACTGACGACCGAACTGCTGTTGTGGGCGATCTTTGGCGGTCCGCTCTT
CTGACTGATATTCGTGTCAACAGCATGCCATGTCACCGTGGTGTTGTTTA
CTGTGTACTGATTCGGAGGATGTCAACCTGCGACATCCAGGGTTGACCAG
GCATGTTGTTGAACACAGAGCACACGAATACAGAGATCGAGTAGGGGGGC
ACACTTTGTGGCGCGATCGAATTCAGCAGCATCGCCACTTCCACTGCTGT
GCGCATGCATGTACGGCAACAGGGCAACTACCAATACTCTTTTTCCGCTG
TAGACGAAAATGTTGGGGCAAATGCAGGCAGACGAGGTAGCAAAGCAAGG
CCTTTTCATGCACTGGTCAAAGGGTGGCGTTCTACTGCTGTGCTCTGTTC
TGATATTTTTGGCTACTTCGATTCTGTCGTTGTTCTTTTCGTTTCCCGTG
TGTCGGCGATCTTCGAGTTGGTTTGAATCTCTGGCATGACCTTGGTGGCA
TCGGGAATAATCGTGGGGTATTGGTTTTTCATCGTTAATTCAAAAGTTTG
GTCGCAATCCAGGTCGTGGCGAGGGCTGGGCCGCACGAGGCAAAACCGAC
GATGAACACACCCAACAGCGGCTCGTGCATCTAGGGGCAATTTTAAGAAA
GTAAATGAAAAACGGTGCAGATGAATAGAGACCCACATGACGAAAGTACG
TTCATCGTGAGCAAGGAGTAGGCAGCCGACGACTAAAATAACAACAGCCT
AAGGTAGGGACATAAAAGTCGCAAACGGCACACAGATACCGTACTATCCT
CTTAAGGATCCCCTGCCCCGCCCCTCACGGGCCTCTGTATGAAACCCGAT
ACATCCTCAGAGCAAGGACATCAGCGCCAAAAGATGGTCGGTGTTTGGAA
TATCTTGTTGAGGGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1298:12194..15661-

>mRNA_P-littoralis_Contig1298.3.2 ID=mRNA_P-littoralis_Contig1298.3.2|Name=mRNA_P-littoralis_Contig1298.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1662bp|location=Sequence derived from alignment at P-littoralis_Contig1298:12194..15661- (Pylaiella littoralis U1_48)
ATGCGGACCAAGTGTAACCATGTTGGCTGCTCGAAGCGGGCGAGCTATGG
TGTCGCAGGTACCAAGACGGCGGAGCTCTGCTCTGGACACGCCAAGGACG
GGACGGTGAACGTCGTGAGCAAGATGTGCAACCACCGTGGGTGCACCAAG
CATCCGAGCTATGGTGTGGCAGGTACCAAGACGGCGGAGTTCTGCTCTGG
ACACGCCAAGGACGGGATGGTGGACGTCGTGAGCAAGAGGTGCAACCACC
GTGGGTGCACCAAGCAGCCGAGCTTTGGTGTGGCGGGTACCAAGACGGCG
GAGCTCTGCTCTGAACACGCCAAGGGCGGGATGGTGAACGTCATGAACAA
GAGGTGCAACCACCGTGGCTGCACCAAGCGGCCGAGCTTTGGTGTGGCGG
GTACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGATG
GACGTCATCCACAAGAGGTGCACCCACCGTGGCTGCACCAAGCATTCGAG
CTTTGGTATGGCGGGTACCAAGACGGCGGAGCTCTGCTCTGGACACGCCA
AGGACGGGATGATGGATGTCATCAGCAAGACGTGCAACCAGCATGGCTGC
ACCAAGCGGGCGAGCTTTGGTGTGGCGGGCACCAAGACGGCGGAGTTCTG
CTCTGAACACGCCAAGGACGGGATGATGGACGTCATGAACAAGACGTGCA
AGCACCGTGGCTGCACCAAGCGGGCGAGCTTTGGTGTGGCAGGCACCAAG
ACGGCGGAGTTCTGCTCGGGACACGCCAAGGACGGGATGGTGAACGTCAA
GAGGAAGAGGTGCAACCACCGTGGCTGCACCAAGCGGGCGAGCTATGGTG
TGGCGGGCACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGG
ATGGTGAACGTCAAAGACAAGAAGAGGTGCAACAAGAAGTGCAGCCACCG
TGGGTGCACCAAGCTAGCGAAATCTAGTGCTGTAGGTAAGGAACAGGCGG
AGGTTTGCAACAAGCATGTCAAGGGCGGAAATGTGGACGTCGTCAATGAG
AGATGTGCCCAACCAGGTTGCACCACCTCTCCTCGCGTCGGTGTGACCGG
CGGCATTCGAACCTTCTGTACGCGACATGCTGGAGAAGGCATGGCGGATC
TCACCGTACCCAATAACCGAGCTGGTGTCCACAGCAGTAACAGTGGTGGC
GCACAAGGGCATGGCGGTGTGGCAGTGGAAGGGGACACTGCCCAACGTTC
TGGTGCCGGTGAAAAGAGGAGGGACCGCTCTCCTTTATCCGCCCAGATGG
AGACATCTCCGTGCAGGAGCAAGCGAAGCCGCCAGGTGCCCGTCCACACG
TATGAGCCTAAGACTCCACTCGAAACAGCAGCGAACGGAGACCACACTCC
AGTTGGATTAGGTTCGTTGTCAGAGCCAGAGAATGCTGGGGTGAAGGCAG
AGGTGGCTGTCTCATCAAAGTCAGACCCCGCGCGATCTTCCCCATTTGAA
GCAGCAGCATGGGTCACCTCTGCGGAGAATGGTTCGTGTGGTGAGCCAGA
CGGTGCGGTGAAGAGGGAAGTGGGAATCCCATTTCCGTCGAAAGGAGCGG
CAGCTGTGGGTAAGCTAAAGTCAAGGAGGACCAAGAGGGTAACGGGGGAG
ACCCGGAAGTAG
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