mRNA_P-littoralis_Contig1296.5.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1296.5.2
Unique NamemRNA_P-littoralis_Contig1296.5.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1296.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1296contigP-littoralis_Contig1296:18745..22122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1425
Hectar predicted targeting categoryother localisation
Exons4
Cds size1425
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.270834-CDS-P-littoralis_Contig1296:18744..191821680789579.270834-CDS-P-littoralis_Contig1296:18744..19182Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 18745..19182 -
1680789579.2812243-CDS-P-littoralis_Contig1296:19961..201351680789579.2812243-CDS-P-littoralis_Contig1296:19961..20135Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 19962..20135 -
1680789579.289104-CDS-P-littoralis_Contig1296:20901..216361680789579.289104-CDS-P-littoralis_Contig1296:20901..21636Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 20902..21636 -
1680789579.2992532-CDS-P-littoralis_Contig1296:22044..221221680789579.2992532-CDS-P-littoralis_Contig1296:22044..22122Pylaiella littoralis U1_48CDSP-littoralis_Contig1296 22045..22122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1296.5.2prot_P-littoralis_Contig1296.5.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1296 18745..22122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1296.5.2

>prot_P-littoralis_Contig1296.5.2 ID=prot_P-littoralis_Contig1296.5.2|Name=mRNA_P-littoralis_Contig1296.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=475bp
GGPSPDARKAKKGLFRGRSFRKSRSKVPDDASELTASVSDLGEMQPSRVP
GEERPLPSASAEGGSEDSVAAGLSADAGAAAATLDTTGAGSGLASGDDER
SADLDEPLPPATGEPQPAVVAAAEEEEASELASLEKDGASSRASDRMSGA
VDAVVRADGGSTAADAAGAAADAAGAAAVAPPQEVHKCATATATTTTTTA
AASTVAAEEERAPETGEASVESTTAAVARGAPEPASDVAETAPAAAAAAA
AENVKDAAAVGEEATTRAMGEEKDHDAVAKGGSGGASAASVDAAVPGSPE
DATAPESAQDETTARVPPSVTAVEEVLREVAAGGAPPAAGEALKGAVAGQ
ASESEAPGVGQGGGEEQPTTTEEEEEVDAVETAAVADKPVLVLEAAGEKS
SLDGTAVSDAGEAAALTPEPPVAGSVGGEEPEEKTVGLPPLPPLAAEWEG
SGTAPADDEATAAATVAAAEEIEEK
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mRNA from alignment at P-littoralis_Contig1296:18745..22122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1296.5.2 ID=mRNA_P-littoralis_Contig1296.5.2|Name=mRNA_P-littoralis_Contig1296.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3378bp|location=Sequence derived from alignment at P-littoralis_Contig1296:18745..22122- (Pylaiella littoralis U1_48)
GGAGGTCCATCTCCGGACGCGAGGAAAGCCAAGAAGGGCCTGTTCAGGGG
CCGATCCTTCAGAAAGTCGCGCAGCAAGGTAAGGCGAGCGGACGGGGGGA
GATGTGTAGCTGTCCCTGTCGAGTAGTGAGTGCGCTCATCGGTATGGTTC
TTTTTCTTGTTCTTTTTCTTTTCTTTTTTGGGGGGGATGACAAAAATAAA
TGGGCACACGATTGATTCCTCATTCATGGCTATTTATTTATGTTAAAACC
GTGTGATCATGAGAGTGAACGAATGAACGAGTGGCTCCTCCGTGCGGCGG
TCGGTACTATCGTGTACCGTAAGTGCCGTTTCGTCGTGTCCTCCCATATA
GGGGGCGTTTTTGTTCCGAGCGGGACAAATTTTTTTGCAGTGTTTTAGCT
TGGTCGAGCGCGCACCAGAAAAAGGTCGGGTTTTCGTTGCCCTCCTCCCT
TCTCAACCCAACCAACGTTTGCGTATATTGTAACAGGTGCCGGATGATGC
TTCCGAGCTGACCGCGTCTGTGTCCGATCTCGGCGAGATGCAGCCGAGTA
GAGTTCCCGGAGAAGAGCGGCCGTTGCCTTCTGCCTCCGCAGAGGGCGGC
AGCGAAGACTCCGTCGCGGCGGGGCTCTCTGCGGATGCGGGTGCGGCGGC
GGCAACGTTGGATACGACCGGCGCCGGCAGCGGGCTGGCGAGCGGCGACG
ACGAGCGGTCGGCAGACCTGGACGAGCCGCTGCCGCCGGCTACTGGCGAG
CCTCAACCAGCCGTTGTTGCTGCTGCTGAGGAGGAGGAGGCATCAGAACT
GGCCTCACTCGAGAAAGATGGAGCGTCGTCACGTGCGTCAGATCGGATGT
CCGGGGCGGTGGATGCGGTCGTTCGCGCCGACGGCGGATCGACTGCAGCC
GATGCGGCGGGGGCGGCAGCCGATGCGGCGGGGGCGGCAGCCGTCGCCCC
ACCGCAAGAAGTCCACAAGTGCGCTACCGCTACTGCTACTACCACTACCA
CTACTGCTGCTGCGTCTACGGTTGCTGCCGAGGAGGAGCGCGCCCCAGAA
ACCGGCGAGGCGTCTGTTGAAAGCACGACAGCAGCCGTGGCACGCGGCGC
ACCCGAGCCTGCCTCGGATGTCGCGGAGACGGCGCCTGCGGCGGCGGCGG
CGGCGGCGGCGGAAAACGTTAAGGATGCTGCGGCTGTTGGTGAAGAAGCC
ACCACCCGGGCGATGGGCGAGGTGAGAGTTGTGTTTCGCTACAAGATAAC
GAGTGTGTTAGTGGGGAATGGTTTTTTGTCGCTCTTGACTTGACTTGACT
GCCCGGCTGTTCGCCTTGGGGTGTCCTTGGCTCTCTCTGCAACTGCTGTC
AAACGCTTTTCAACGCGTGCATGCGTGCGTGCCTCAAAGCGAATGGGCCA
CGAAATGGTCCTCAGCCTACATACAATAACCGATACCCGTTCGTTTTGTT
ACACTGTTTTTTTAAAGGGGCACGGATATTCCTTTAAACCGCCCTTACCG
TGTTGAAAATCCAAAATCCGTGACCGAAAGATCCGGCCTTATCGCTTGGT
CGTGTCGATGATTTTTGTTCGCCAGCCGTCTGCCGACTTCACCAAGCATT
CCACTTTACCCCCATTTCGTCTGTGTAGCTCGCGTTCACACCGGACTAAT
AATGACTATGCGTGGGTGAGGCCACGATGCGTGGGTGAGGCTTGAGCAAG
CCAGAGCTTCACGGCACGTCATGTGGATGTCAAGATAGCACCTCCTCGCT
GTTCGAGAACGCACATCGGGTTGAGATCATGCTCATGCATGCCTGGTGAT
CTCTCTCGATGGTGCCCGACACAAATCTGACTACTACGAGTACGTGTACT
GCTGTGAACCCGTGCTCACTTGGTCCGCCTCACGTAAAAACAAACAAACC
CCGCTGTGCCTCACATATCACCGACTGCATTCCTGCCCCCAGCCTCAACT
AATCCCTCTCACCTCCCCGTGACAATCCGCGTTAAAGGAGAAGGACCACG
ATGCCGTGGCCAAGGGGGGATCGGGGGGAGCGTCTGCCGCCTCAGTCGAT
GCTGCGGTTCCGGGCTCCCCGGAGGATGCAACCGCCCCCGAGTCCGCGCA
GGATGAGACAACAGCACGGGTGCCGCCTAGCGTGACAGCCGTGGAGGAGG
TGCTCCGTGAGGTACGAGTGGCGGCGCTGCCGGCTTGCATCGGCGGTAGG
GAGCCATGAAGCGCTGGTTGAGACAAGGGGGGTGTAATGCCGAACAGCAC
GGCAGATAAGGGTGATATTCTCTCTCAAGTGTGGTTGTGATTACCCGTCG
GTTTGTGTGCAGCACAGATTGGTCTCAGACAGTTGTTTTTGTTTTGTACC
TGAAGATGGAAAGTAGCGGGGCGCTATTTCAAGTGTTTTGTAGGCTGTCT
GTTTGACCGCTCCAGCCCTGCAAAATGTTTCGTGTAAGGGCGTGTTGAGG
GGCTACAGGGCAGGCAGAGCACGCCGATCGGTAAGAGCGGCTTCGGAAAC
GCCCATTGTTGTGTACAATCGCTGCAATATTCTTTTTCCGCTGGGGGGAG
CACCAACCCGCGACACCCCACGGCTGTAACCGTCCGGCCCCCCCTTCGGC
TGACGTTGAAAATAACGCACACCAAGCTGCTGCTGCTGCTGCGCGAGCAT
TCGCAACCGAGTCGCACGAGCAGCTCCGATCACGCAACGATGACGACGCC
ACCGCCGTCTCTTAATTGCGCTTCGCCCCCCCCCCCCCCCCCCCACGCGG
CCAGCCCCCGCCGTCCGCCACGGCCTAGCTCGACCGATTGCTAGCTGCGT
GTGGCTCGAATTTCAAATCCAGTGTTTTGCTTTGCGGGTCTAAAACCGCG
CGCACGCACGGCTGCTCATTTCCGCGCCTTCGCCTTCGCGCTCTGTCTCT
CTTTCCTCTCTCGACTGTCCGCCGTCCGTCCGTCCGACAGGTAGCCGCAG
GTGGTGCACCGCCAGCCGCCGGAGAAGCCCTCAAAGGGGCGGTCGCCGGT
CAAGCTTCCGAGTCCGAGGCGCCGGGCGTCGGTCAAGGCGGCGGGGAGGA
GCAGCCGACAACGACGGAGGAGGAGGAGGAGGTTGATGCGGTCGAGACGG
CGGCAGTCGCGGATAAGCCCGTCCTGGTCCTGGAGGCTGCTGGAGAGAAG
TCCTCTCTGGATGGGACGGCCGTGAGCGACGCCGGCGAAGCCGCTGCGCT
GACCCCGGAACCGCCTGTCGCCGGGTCGGTCGGGGGGGAGGAACCTGAGG
AGAAGACTGTTGGCCTGCCGCCCCTGCCGCCCCTTGCCGCCGAATGGGAG
GGGTCAGGGACGGCCCCGGCCGACGACGAGGCCACCGCCGCCGCCACCGT
GGCAGCAGCGGAAGAAATTGAGGAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1296:18745..22122-

>mRNA_P-littoralis_Contig1296.5.2 ID=mRNA_P-littoralis_Contig1296.5.2|Name=mRNA_P-littoralis_Contig1296.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1425bp|location=Sequence derived from alignment at P-littoralis_Contig1296:18745..22122- (Pylaiella littoralis U1_48)
GGAGGTCCATCTCCGGACGCGAGGAAAGCCAAGAAGGGCCTGTTCAGGGG
CCGATCCTTCAGAAAGTCGCGCAGCAAGGTGCCGGATGATGCTTCCGAGC
TGACCGCGTCTGTGTCCGATCTCGGCGAGATGCAGCCGAGTAGAGTTCCC
GGAGAAGAGCGGCCGTTGCCTTCTGCCTCCGCAGAGGGCGGCAGCGAAGA
CTCCGTCGCGGCGGGGCTCTCTGCGGATGCGGGTGCGGCGGCGGCAACGT
TGGATACGACCGGCGCCGGCAGCGGGCTGGCGAGCGGCGACGACGAGCGG
TCGGCAGACCTGGACGAGCCGCTGCCGCCGGCTACTGGCGAGCCTCAACC
AGCCGTTGTTGCTGCTGCTGAGGAGGAGGAGGCATCAGAACTGGCCTCAC
TCGAGAAAGATGGAGCGTCGTCACGTGCGTCAGATCGGATGTCCGGGGCG
GTGGATGCGGTCGTTCGCGCCGACGGCGGATCGACTGCAGCCGATGCGGC
GGGGGCGGCAGCCGATGCGGCGGGGGCGGCAGCCGTCGCCCCACCGCAAG
AAGTCCACAAGTGCGCTACCGCTACTGCTACTACCACTACCACTACTGCT
GCTGCGTCTACGGTTGCTGCCGAGGAGGAGCGCGCCCCAGAAACCGGCGA
GGCGTCTGTTGAAAGCACGACAGCAGCCGTGGCACGCGGCGCACCCGAGC
CTGCCTCGGATGTCGCGGAGACGGCGCCTGCGGCGGCGGCGGCGGCGGCG
GCGGAAAACGTTAAGGATGCTGCGGCTGTTGGTGAAGAAGCCACCACCCG
GGCGATGGGCGAGGAGAAGGACCACGATGCCGTGGCCAAGGGGGGATCGG
GGGGAGCGTCTGCCGCCTCAGTCGATGCTGCGGTTCCGGGCTCCCCGGAG
GATGCAACCGCCCCCGAGTCCGCGCAGGATGAGACAACAGCACGGGTGCC
GCCTAGCGTGACAGCCGTGGAGGAGGTGCTCCGTGAGGTAGCCGCAGGTG
GTGCACCGCCAGCCGCCGGAGAAGCCCTCAAAGGGGCGGTCGCCGGTCAA
GCTTCCGAGTCCGAGGCGCCGGGCGTCGGTCAAGGCGGCGGGGAGGAGCA
GCCGACAACGACGGAGGAGGAGGAGGAGGTTGATGCGGTCGAGACGGCGG
CAGTCGCGGATAAGCCCGTCCTGGTCCTGGAGGCTGCTGGAGAGAAGTCC
TCTCTGGATGGGACGGCCGTGAGCGACGCCGGCGAAGCCGCTGCGCTGAC
CCCGGAACCGCCTGTCGCCGGGTCGGTCGGGGGGGAGGAACCTGAGGAGA
AGACTGTTGGCCTGCCGCCCCTGCCGCCCCTTGCCGCCGAATGGGAGGGG
TCAGGGACGGCCCCGGCCGACGACGAGGCCACCGCCGCCGCCACCGTGGC
AGCAGCGGAAGAAATTGAGGAGAAG
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