mRNA_P-littoralis_Contig1291.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1291.8.1
Unique NamemRNA_P-littoralis_Contig1291.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.910e-17
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:   22 ALGSPSEAWELMVEMYTALSTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKEAHGELELERSR 366
            A  SP + W+++ E Y     + K  LEQ+W  LE +  E+P  Y ARA+ LR +    G+   ++++N+ IAR L S Y + K +LL  D ++  TLE  V++AH E+E ERS+
Sbjct:   66 ACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDYIARAEALRLRLASVGMIKDETDANKEIARGLPSSYVVHKGILLAHDVLTLRTLETVVRDAHVEMERERSK 180
[Close]
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.510e-14
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:   22 ALGSPSEAWELMVEMYTALSTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL-SSDYALQKSMLLISDEISTETLERTVKEAHGELELERSR 366
            A  SP + W+++ E Y     + K  LEQ+W  LEM+  E+P  Y A ++ LR +    G    ++ +N+ IAR L SS YA+QK  LL  D ++  TLE  V++AH E+E ERS+
Sbjct:  200 AFESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDYIAHSEALRLRLASVGTIKDETYANKDIARGLPSSLYAVQKGNLLAYDVLTLHTLETVVRDAHVEMERERSK 315
[Close]
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Match: A0A6H5KMP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.440e-12
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   55 MVEMYTALSTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL-SSDYALQKSMLLISDEISTETLERTVKEAHGELELERSR 366
            + E Y     + K  LEQ+W  LEM+  E+P  Y AR++ LR +    G    ++++N+ IAR L SS YA+QK +LL  D ++  TLE  V++AH E+E ERS+
Sbjct:  132 VTEFYQEKKQSEKSRLEQDWKQLEMKESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSLYAVQKGILLAHDVLTLRTLETVVRDAHVEMERERSK 236
[Close]
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Match: A0A6H5KR35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR35_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.660e-9
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  109 EWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL-SSDYALQKSMLLISDEISTETLERTVKEAHGELELERSR 366
            +W  LEM+V E+P  Y AR++ LR +    G    ++++N+ IAR L SS YA+QK +LL  D ++  TL+  V++AH E+E ERS+
Sbjct:  612 DWEELEMRVSESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSLYAVQKGILLAHDVLTLRTLDTVVRDAHVEMERERSK 698
[Close]
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Match: A0A6H5KS45_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS45_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.240e-8
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:  100 LEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL-SSDYALQKSMLLISDEISTETLERTVKEAHGELELERSR 366
            LEQ+W  LEM+  E+P  Y  R++ LR +    G    ++++N+ I R L SS +A+QK +LL    ++  TLE  V++AH E+E ERS+
Sbjct:   65 LEQDWKELEMRESESPHDYIVRSEALRLRLASVGTIADETDANKVIVRGLPSSLFAVQKGILLAHYVLTLRTLETVVRDAHMEMERERSK 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1291.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KDM9_9PHAE5.910e-1738.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHU8_9PHAE1.510e-1439.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KMP0_9PHAE1.440e-1240.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KR35_9PHAE1.660e-942.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS45_9PHAE4.240e-840.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1291contigP-littoralis_Contig1291:32105..32470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.845132-CDS-P-littoralis_Contig1291:32104..324701680789577.845132-CDS-P-littoralis_Contig1291:32104..32470Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 32105..32470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1291.8.1prot_P-littoralis_Contig1291.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1291 32105..32470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1291.8.1

>prot_P-littoralis_Contig1291.8.1 ID=prot_P-littoralis_Contig1291.8.1|Name=mRNA_P-littoralis_Contig1291.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
SLVEQLQALGSPSEAWELMVEMYTALSTTAKETLEQEWINLEMQVGETPT
LYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEI
STETLERTVKEAHGELELERSR
back to top

mRNA from alignment at P-littoralis_Contig1291:32105..32470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1291.8.1 ID=mRNA_P-littoralis_Contig1291.8.1|Name=mRNA_P-littoralis_Contig1291.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1291:32105..32470+ (Pylaiella littoralis U1_48)
TCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGA
GCTGATGGTAGAGATGTATACTGCCTTGTCCACCACAGCCAAAGAAACAC
TTGAGCAGGAGTGGATTAATCTGGAGATGCAAGTAGGAGAGACCCCCACT
TTGTACTTTGCTCGCGCCAAAACGCTGCGCACAAAGCGTGAAAAACATGG
CGTGACACTTTCCGATTCAGAGTCTAACAGACATATTGCCCGCCGTCTTT
CGTCCGACTACGCACTGCAAAAGAGTATGCTTCTGATAAGTGATGAGATT
TCTACAGAGACCCTCGAACGCACAGTGAAGGAGGCGCACGGGGAGTTGGA
ATTGGAACGGTCGAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1291:32105..32470+

>mRNA_P-littoralis_Contig1291.8.1 ID=mRNA_P-littoralis_Contig1291.8.1|Name=mRNA_P-littoralis_Contig1291.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1291:32105..32470+ (Pylaiella littoralis U1_48)
TCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGA
GCTGATGGTAGAGATGTATACTGCCTTGTCCACCACAGCCAAAGAAACAC
TTGAGCAGGAGTGGATTAATCTGGAGATGCAAGTAGGAGAGACCCCCACT
TTGTACTTTGCTCGCGCCAAAACGCTGCGCACAAAGCGTGAAAAACATGG
CGTGACACTTTCCGATTCAGAGTCTAACAGACATATTGCCCGCCGTCTTT
CGTCCGACTACGCACTGCAAAAGAGTATGCTTCTGATAAGTGATGAGATT
TCTACAGAGACCCTCGAACGCACAGTGAAGGAGGCGCACGGGGAGTTGGA
ATTGGAACGGTCGAGG
back to top