mRNA_P-littoralis_Contig129.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.90.1
Unique NamemRNA_P-littoralis_Contig129.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig129.90.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.760e-20
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFR 198
            +G R PRQ PPTL+QLKGMSR +++ RCTT+QLVVL  AA I +GT+NSRK DLLDYL+ +V GFR
Sbjct:  403 KGGRAPRQAPPTLDQLKGMSRAEIRDRCTTKQLVVLTKAAEIPKGTVNSRKADLLDYLETFVCGFR 468
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BLAST of mRNA_P-littoralis_Contig129.90.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   19 RQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDS 207
            RQ PPTL QLKGMSR D+  RCT RQL++L   AGI++GT+NSR++DLLDYL  YVGGF  +S
Sbjct:  238 RQAPPTLNQLKGMSRVDISDRCTVRQLLLLVKDAGIKKGTMNSRQDDLLDYLAAYVGGFGQES 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE9.760e-2066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE1.460e-1765.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:328225..328434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size211
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789576.317192-CDS-P-littoralis_Contig129:328224..3284341680789576.317192-CDS-P-littoralis_Contig129:328224..328434Pylaiella littoralis U1_48CDSP-littoralis_Contig129 328225..328434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.90.1prot_P-littoralis_Contig129.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 328225..328434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.90.1

>prot_P-littoralis_Contig129.90.1 ID=prot_P-littoralis_Contig129.90.1|Name=mRNA_P-littoralis_Contig129.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSR
KEDLLDYLDEYVGGFRCDSG
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mRNA from alignment at P-littoralis_Contig129:328225..328434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.90.1 ID=mRNA_P-littoralis_Contig129.90.1|Name=mRNA_P-littoralis_Contig129.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig129:328225..328434- (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:328225..328434-

>mRNA_P-littoralis_Contig129.90.1 ID=mRNA_P-littoralis_Contig129.90.1|Name=mRNA_P-littoralis_Contig129.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig129:328225..328434- (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGC
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