mRNA_P-littoralis_Contig100.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.8.1
Unique NamemRNA_P-littoralis_Contig100.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.660e-25
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336
            EFV D QYL FASVSRGW++ WGK RPTVT A+TADTS+ QL  S ECGL R+A  C  +A  GRLDLL+ A+  G +W+  TC
Sbjct:   15 EFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97          
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.280e-25
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336
            EFV D QYL FASVSRGW++ WGK RPTVT A+TADTS+SQL  S ECGL R+A  C  +A  GRLDLL+ A+  G  W+  TC
Sbjct:   17 EFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99          
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.690e-24
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHA-CMAMARYGRLDLLQFAQENGFRWDSLTC 336
            EFVHD Q+L FASVSR W+ AW +GRPT T A+T DTS SQL  S++CGL     A C A+A  GRLDLL+ A+  GFRWD +TC
Sbjct:   17 EFVHDDQFLFFASVSRAWRGAW-RGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTC 100          
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.930e-24
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336
            EFV D Q+L FASVSRGW++ WGK RPTVT A+TADTS+ QL  S ECGL R+A  C  +A  GRLDLLQ A+  G  W+  TC
Sbjct:   33 EFVDDNQHLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENTC 115          
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-12
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGR-----SAHACMAMARYGRLDLLQFAQE 306
            EFV DKQYL FA VS+ W++AWG GRPTVT+  T  TS+SQL +S++CGL +     +     ++AR G + LL+ A +
Sbjct:    3 EFVGDKQYLFFAPVSQDWRSAWG-GRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHK 80          
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-10
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLG---RSAHACMAMARYGRLDLLQFAQENGFRWDSLT 333
            EFV D QYL    VS+ ++ AWG  R TVT  V ADTS+ QL   ++  L    R    C A AR+GRLDLL+ AQE+   W   T
Sbjct:    6 EFVQD-QYLFIGPVSKDFRRAWGP-RATVTRPVVADTSVKQLRCCLKLDLPLRIRRTSICNAAARFGRLDLLELAQESACGWTPAT 89          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0J7_9PHAE1.660e-2560.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI8.280e-2561.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDD9_ECTSI1.690e-2460.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0K8_9PHAE1.930e-2460.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC4_ECTSI2.030e-1248.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0L3_9PHAE1.030e-1046.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:28926..29261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJY0
PFAMsAnk_2,Ank_4
Model size336
Max annot lvl2759|Eukaryota
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.77e-13
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size336
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789339.4067695-CDS-P-littoralis_Contig100:28925..292611680789339.4067695-CDS-P-littoralis_Contig100:28925..29261Pylaiella littoralis U1_48CDSP-littoralis_Contig100 28926..29261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.8.1prot_P-littoralis_Contig100.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 28926..29261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.8.1

>prot_P-littoralis_Contig100.8.1 ID=prot_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
TVYRFLCEKVGAWKILWQLAPTSPRTWQEFVHDKQYLHFASVSRGWKNAW
GKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFA
QENGFRWDSLTC
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mRNA from alignment at P-littoralis_Contig100:28926..29261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.8.1 ID=mRNA_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig100:28926..29261+ (Pylaiella littoralis U1_48)
ACAGTTTACAGATTTCTTTGCGAAAAGGTTGGGGCATGGAAAATCCTCTG GCAGCTAGCGCCGACATCACCTCGTACCTGGCAAGAGTTCGTACACGATA AGCAGTACCTGCACTTCGCGTCTGTCTCCAGAGGTTGGAAGAATGCTTGG GGGAAGGGACGGCCCACGGTCACCGCTGCCGTGACGGCTGACACCTCTAT TTCTCAACTGTTGTTCAGCATCGAGTGCGGTTTGGGTCGAAGTGCTCACG CGTGCATGGCCATGGCTAGGTATGGAAGGCTCGACCTCCTCCAGTTTGCT CAAGAGAACGGGTTCCGCTGGGATAGCTTGACGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:28926..29261+

>mRNA_P-littoralis_Contig100.8.1 ID=mRNA_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig100:28926..29261+ (Pylaiella littoralis U1_48)
ACAGTTTACAGATTTCTTTGCGAAAAGGTTGGGGCATGGAAAATCCTCTG
GCAGCTAGCGCCGACATCACCTCGTACCTGGCAAGAGTTCGTACACGATA
AGCAGTACCTGCACTTCGCGTCTGTCTCCAGAGGTTGGAAGAATGCTTGG
GGGAAGGGACGGCCCACGGTCACCGCTGCCGTGACGGCTGACACCTCTAT
TTCTCAACTGTTGTTCAGCATCGAGTGCGGTTTGGGTCGAAGTGCTCACG
CGTGCATGGCCATGGCTAGGTATGGAAGGCTCGACCTCCTCCAGTTTGCT
CAAGAGAACGGGTTCCGCTGGGATAGCTTGACGTGC
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