mRNA_P-littoralis_Contig1289.7.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1289.7.3
Unique NamemRNA_P-littoralis_Contig1289.7.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1289.7.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1289contigP-littoralis_Contig1289:23535..27610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.493942-CDS-P-littoralis_Contig1289:23534..236171680789573.493942-CDS-P-littoralis_Contig1289:23534..23617Pylaiella littoralis U1_48CDSP-littoralis_Contig1289 23535..23617 -
1680789573.5079026-CDS-P-littoralis_Contig1289:27528..276101680789573.5079026-CDS-P-littoralis_Contig1289:27528..27610Pylaiella littoralis U1_48CDSP-littoralis_Contig1289 27529..27610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1289.7.3prot_P-littoralis_Contig1289.7.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1289 23535..27610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1289.7.3

>prot_P-littoralis_Contig1289.7.3 ID=prot_P-littoralis_Contig1289.7.3|Name=mRNA_P-littoralis_Contig1289.7.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
TRVRASFDRPSLHSRGSRQGLRALPRTDRSERQNKETAGDLRISGRPSRG
DELER
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mRNA from alignment at P-littoralis_Contig1289:23535..27610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1289.7.3 ID=mRNA_P-littoralis_Contig1289.7.3|Name=mRNA_P-littoralis_Contig1289.7.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4076bp|location=Sequence derived from alignment at P-littoralis_Contig1289:23535..27610- (Pylaiella littoralis U1_48)
ACGCGTGTGCGAGCCTCCTTTGACCGACCGAGTCTTCACAGTCGGGGTTC
ACGTCAGGGTCTCCGGGCACTCCCGCGTACCGGTGAGCAAAGAGAACTTG
ACGGCCTGATCCGGCATTTGCCCTGCGATCGCTCGCGTGTGTCGCCACCC
GCGTTGTCGCCGCCCGCACTCGTCGACTGCGTGATCAACGGATAATTACC
CACCTGGTGTGTCAGACTTGCGCATCCCTTGGTACAGTCGAGTTTTTGTT
TGCGAAAACGAATCCGATTTGCTCATCCCGGGCCCATTTGGGGCTCCTGG
TGGCGGAAGGAATCTCCCGACACTGTTTTTGTGGTTCTTTACATGGTATT
ATTTCTTGGTCTCTCCACGGTGGTCCAAACTTCTGACATCTACGTGCGAA
TCCGAATCCCAGTGCCTGGTGCAGAATACCCAACCTGGTTTTTTTTCTCA
CAATGCGCGTGAAAGTTGAAAGCGATAAACTCGGGGGTAAACAAAATCCG
ATCGTACCATCGACGAGGGAAAGGGGTTGCTGTCCCCTTTCTCGCGATAA
ACGCTCAATCAAACAAGGCAAGCACCGCAGAGGGATGTGGAGGGACAAAA
AAAAAAACCTCCTATGTTGACTGCTTCCTCGTGTGTAACCCCAGTTGGAG
CGTCGACCTATCCGAAAGTTGTAGAGTGGCGTCCAATCAACGGGACGGCA
ATACACACACTCTCATCATGTGAGCCGTTCGACTACTCATTTGTCTAGAC
TGCTGTGTCTCGTATTATGGCGGTTCAACCTATCTCTGTCCAGAGGACAT
ACTATACACAAGTCGCCTCCTTTCCCGAGGGCACACGTATGAGACACATG
TCGCTCGCTTCTACTTCAATGTATTTGCCAGTAATTTTCGTTTCTTGACA
CTTATATTCATCGGAAATACTTCGTTTCCTTGTCAAGAGGACATAACACA
TGACATGTACGAGAGACATGTCGCTGGCTTCTATTTTGCCATCAATTTTT
TCTCGACACTACTATGCATCCATCGGGAATATAGGCTCTCACCAGAAAAA
CGTCTTTCAATATACGCATTTGGGTTCACCCTTTTCCTCCACTGACGGTT
GGAATTAAAATTTACGCTTTTCATTATCTGGCCCCTTGTGTAGCTCTTGG
CAAATTGGCGGCGACCATCAAGAGTCGTTTTATGTCGTCGTCGGAAAATA
CAAACACTTGACGGAGATTATTGTGTACGAGGGGTCGGACACAGAAACCA
ACATACATACTACACTTTGCCGGAGCAGCGGTTCTGCTTCACCCCGCGAA
AGTCGAGGCCATAGCGCATCGTCACCCACGCACAAACAAACAGCAGGAGC
AAGTCGTATAGCAGCATGCATGTATACTTCGTATATTGTTGTGTGTGTTG
TATCTTGACCGCGGAGGAATCACATTTTGTAGAATGAATGAGAACTGAGA
AGCAGAGAAGTAGAAGAACAACCAGACGGAGCAGCGGCGAGCGGTTCCAA
CCCACCCTGCGCAAGATCACACAGCTAGCTGTCTGTAAAGACAGTACTGC
AGCAGTACAGACAGACAAGTAGATGCATGTCTTCGTGACCGCTGCTGCGG
GTGGGTGGTGGTGACGCTGATTCTGGTGGGTCACAGCTGCTGCATGCTGC
CGTGTCATCATCGTGTGGGATACACCAAGAGACAGGAAGAAAATCCCACC
AAGCTATGTGCACAGCAGACTCACATACCACGTGTGTGCTGGTGTACAGG
TATACACCGTAATAATGCGGGTCTTGGCACACTGCTGTGCAGACGCCTTT
TCAAATATTTTGTCCAAGTATTTTCAACGCACACCCTGTGCCGACACCCC
GATATGTGCGGAGACCTCGATCCCTGTGCGATAATGGAATTAAATACTTT
GGTTGTGCTGTACAACGCACACCCTGTGCCAAGCCCCCAATATGTTCGGT
TCTGATAAAGGCAATCAAGCGCCGCTGTAGGGTGTTTCGAACGCACACCT
CTGTGCCAAGACGCCGATATGTGCGATCGAAACAAATCACAGCGGACACA
GCAGCACCTCGTGCAGAAGGTATTACTGCAAAATGCTTAAGTCACACAAG
TACAACACCAGTTGTAGGTACATACGCACGACGACACCGGACACCAAAAA
ACAAAAAGCGTGGACAGTGGCAACGTTTGGCGTTACAACACTGTGTGTGC
AGCGGGGCATGGTCGGTAGAATAGGTAGGTGTTGGGTTGGTATAAGGAAC
GAAGAACGGCGTAGAGCGCAGAACGTTTCAAGCGTCGGTAGGCACCCTGG
TTGCGGCGTTGTTCTCGTGTAGTTTGTAGGTCGGCTTGTGTGGGTGATGT
GTTCCATTTTCGATGAAAATAAAAAATAACGACAAGAAGAGAGTCAACCG
AACGGAAACGGCTAATTGATTGCCCATAAAGCACCGACACGTGGCCGACG
AAAAGCAGTGCCGCCCGTGTTACAAGTTCTGAAGTACCGCATGTGCTTTT
ACGCAAACTGCTGGACACCACCCTGTGGTGTACCGTAATTGTGCGGGTCT
CCGCACAGTGTGCGGAGACCCCGAGGCCTTTGCGATAATCGAATTAAATA
TTGTTTTTCAGTATTTTCAACGCACACCCTTAGCCAAGGAGCCGGGCTCA
CGCTTTAGGTCGTGAAAATGGTTGACAGAAATATATAGGAATCTAAGGGT
GACCGGGCTCAGAATTAGAACCAAATACCGAGGTACGAGGTACGCAGACG
CTGGGTCTTTAGATTGTCTCGAGGTGGCTGGCTCCACTCTCTGTACTCTC
TCTGCCCGTCCTGCCCGTGGCCCGATGGCTCGGCGGACTGTATCCTAGTG
TTGTCCTACTCACTCCTGTTGCGTTGGCCCTAACCCTAACCCCAACCCTA
ACCCTAACTCAAGCTGACATATACACCGACGAGGCTCCGTTACACCGATA
TTCCCCGCATTTTCCTCGAATCTTCTATACCTGACTGGAGACCATTTCAC
GACCTAAACCGTAAGCCCTTCTGGCCCCAACCCATACGCGACACACAAAA
TAGCAATGATTAATGAAAAAAGAACCCTTCGAGAGTATTTTATTTTATTT
TTTGTCTTTCGTCTGTTGATCATATAGTTACTGGGCCATCGCCCTGGTTT
GCGTCTGCCTTGGTCTGTCATGGCCCTGGGCCCTGGTTCGATGCACGAAG
TACTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTTGGTTATTTTTTGT
TTGTCGGACTGTTTCCAATTTTTGTTTTTCTTTCGAGCCTGTTATTATTT
TTTCTGTGTTTGTTTGGTATCCTGGCCACCACAGATGGTACCCCAACGGT
ACCACGTCTGATCTGACTGTGGGTGATCATAGTCCATATATTTTATTTTT
TATTTTGTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTA
GACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAACAACAACCTA
GTGGCCTGCTGCTATGCTGTGAGTGAAATATAAAAAAGAGAGGTCGTCAG
GTCTAGTCGTCAAGGAACCTGCTTGGAAAGAAAGGGCGGAAACGGTTTTG
TACGGGTTAGGTCAGGTATCGAACTCACAAGGAGGGCCAGGCCCGCCCAC
AGCACTTTTTCGAATAAAATACTTCGTATGTTATTGAAAGTAGTCTATAT
GTGCCTGGTTATGTGACCACGGGCTAGACTGCGGAGGTAGTGAGCTCATG
TGAGAATCAACGACATATTGGTTGACCGGAGCGAGATTACGTGGTTGCTC
GTGGTGTGTCGCAGCTTGCGGATGGATGCGACCGGGGCATCTTATAAAAA
AAAGAACGAATCTTGCCACGCCCCAAACTTTCCACACCCTGCCCCAACCC
CTACGCGACAGACAAAATAACAATGATAAATGAGAAAAGAACCCTTCGAG
AGTACTAAACAAAATCAGATATTACAGGTGACTCCTCCTGCAGACCGCAG
TGAGAGGCAAAACAAAGAGACGGCAGGTGACCTCCGGATCTCCGGTAGAC
CTTCTCGGGGAGACGAGCTGGAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1289:23535..27610-

>mRNA_P-littoralis_Contig1289.7.3 ID=mRNA_P-littoralis_Contig1289.7.3|Name=mRNA_P-littoralis_Contig1289.7.3|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1289:23535..27610- (Pylaiella littoralis U1_48)
ACGCGTGTGCGAGCCTCCTTTGACCGACCGAGTCTTCACAGTCGGGGTTC
ACGTCAGGGTCTCCGGGCACTCCCGCGTACCGACCGCAGTGAGAGGCAAA
ACAAAGAGACGGCAGGTGACCTCCGGATCTCCGGTAGACCTTCTCGGGGA
GACGAGCTGGAACGA
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