mRNA_P-littoralis_Contig1281.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1281.25.1
Unique Name	mRNA_P-littoralis_Contig1281.25.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5J952_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J952_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.260e-40
Identity = 68/102 (66.67%), Postives = 78/102 (76.47%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+GA+ VV FLR FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IGK E+YRP S L G +GTR MYHFAGAN P    +TTT+G  D
Sbjct:  180 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNSVLAGTEGTRDMYHFAGANTPKWDGSTTTEGRVD 281

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5JFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.750e-39
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+GA+ VV FLR FFR+K G+ GEE MR+YFA WSPY +R+VHVE IGK EIYRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  122 NAMKRRERFGKRIMGADGVVRFLRSFFREKAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPEWDGSTSTKGRED 223

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.180e-39
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+ AN VV FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE IGK E+YRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  196 NAMKRRERFGKRIMVANGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEIIGKKEVYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 297

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.780e-37
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+GA+ VV FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE I K EIYRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  502 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEFISKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 603

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 8.980e-37
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ 305
            NAMK  ERFGK I+GA+ V  FLR FF +K G+ GEE MR+YFA WSPYR+R+VH E IGK EIYRP S L+G++GTR MYHFAGAN P    +TTT+GL+
Sbjct:  674 NAMKRRERFGKRIMGADGVFSFLRSFFEEKAGSEGEEGMRRYFAKWSPYRMRRVHFEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTTTEGLE 774

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.570e-36
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ-DIELV 320
            NAMK  E F K I+GA+ VV FLR FFR+K G+ G E MRKYFA WSPYR+R+VHVE IGK EIYRP S L GI+GTR MYHFAGAN P    +TTT+GL+ D +LV
Sbjct:  468 NAMKRREIFDKRIMGADGVVSFLRSFFREKAGSEGGEGMRKYFAKWSPYRMRRVHVECIGKKEIYRPNSVLAGIEGTRDMYHFAGANTPKWDGSTTTEGLENDCKLV 574

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.130e-36
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+GA+ VV F R FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IG  EI RP S L G++GT  MYHFAGAN P    +TTT+GL+D
Sbjct:  207 NAMKRRERFGKRIMGADGVVSFWRCFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGNKEISRPNSVLAGLEGTLDMYHFAGANNPKWDGSTTTEGLED 308

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.650e-35
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERF K I+GA+ VV FLR FFR+K G+ GEE MR++FA WSPYR+R+VHVE +GK EIYRP S L+G++GTR MYH AG N P    +T+T G  D
Sbjct:  228 NAMKRRERFVKRIMGADGVVSFLRSFFREKAGSEGEEGMRRFFARWSPYRMRRVHVEFMGKKEIYRPNSILEGVEGTREMYHLAGPNTPEWDGSTSTKGRGD 329

[Close]

BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.260e-34
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 3

Query:    6 NAMKNHERFGKCILGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            NAMK  ERFGK I+G   VV FLR FFR+K G+ GEE MRKYFA W+PYR+R+VHVE  G  EIYR  S L GI+GTR M HFAGAN P    +TTT+G +D
Sbjct:  144 NAMKWKERFGKRIMGTGGVVSFLRSFFREKAGSEGEEGMRKYFAKWAPYRMRRVHVEFFGMKEIYRTNSVLAGIEGTRDMCHFAGANTPKWDGSTTTEGRED 245

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BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.360e-29
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 3

Query:   45 LGANKVVDFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 308
            +GA+ VV FLR FFR+K G+ GEE MR YFA WSPYR+R+V VE IGK EIYR  S L GI+GTR MYHFAGAN P     TTT+G +D
Sbjct:    1 MGADGVVSFLRSFFREKAGSEGEEGMR-YFAKWSPYRMRRVQVEFIGKKEIYRLNSVLAGIEGTRDMYHFAGANTPKWDGFTTTEGRED 88

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1281.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
A0A6H5J952_9PHAE	8.260e-40	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFY7_9PHAE	1.750e-39	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQG9_9PHAE	5.180e-39	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L293_9PHAE	3.780e-37	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI10_9PHAE	8.980e-37	64.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2L6_9PHAE	4.570e-36	65.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLE6_9PHAE	8.130e-36	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7F4_9PHAE	2.650e-35	60.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBS1_9PHAE	1.260e-34	62.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLE4_9PHAE	4.360e-29	64.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1281	contig	P-littoralis_Contig1281:36260..36579 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	321
Hectar predicted targeting category	other localisation
Exons	1
Cds size	309

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789572.3053062-CDS-P-littoralis_Contig1281:36259..36568	1680789572.3053062-CDS-P-littoralis_Contig1281:36259..36568	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1281 36260..36568 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789572.3183844-UTR-P-littoralis_Contig1281:36568..36579	1680789572.3183844-UTR-P-littoralis_Contig1281:36568..36579	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1281 36569..36579 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1281.25.1	prot_P-littoralis_Contig1281.25.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1281 36260..36568 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1281:36260..36579-
coding sequence from alignment at P-littoralis_Contig1281:36260..36579-

protein sequence of mRNA_P-littoralis_Contig1281.25.1

>prot_P-littoralis_Contig1281.25.1 ID=prot_P-littoralis_Contig1281.25.1|Name=mRNA_P-littoralis_Contig1281.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MKNHERFGKCILGANKVVDFLRKFFRQKGGNGEEDMRKYFASWSPYRIRK
VHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQDI
ELV

mRNA from alignment at P-littoralis_Contig1281:36260..36579-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1281.25.1 ID=mRNA_P-littoralis_Contig1281.25.1|Name=mRNA_P-littoralis_Contig1281.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig1281:36260..36579- (Pylaiella littoralis U1_48)
CAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAAGTGCATTCTGGGG
GCGAACAAGGTGGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGG
CAACGGTGAAGAGGACATGCGGAAGTACTTCGCGTCGTGGTCTCCGTACC
GCATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGG
CCCGGCTCGGAGCTGGACGGTATAGACGGAACGCGTGTGATGTACCACTT
TGCGGGAGCGAACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGAC
TGCAAGACATCGAGCTAGTG

Coding sequence (CDS) from alignment at P-littoralis_Contig1281:36260..36579-

>mRNA_P-littoralis_Contig1281.25.1 ID=mRNA_P-littoralis_Contig1281.25.1|Name=mRNA_P-littoralis_Contig1281.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1281:36260..36579- (Pylaiella littoralis U1_48)
ATGAAGAACCATGAGCGGTTTGGCAAGTGCATTCTGGGGGCGAACAAGGT
GGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGGCAACGGTGAAG
AGGACATGCGGAAGTACTTCGCGTCGTGGTCTCCGTACCGCATCCGCAAG
GTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGGCCCGGCTCGGA
GCTGGACGGTATAGACGGAACGCGTGTGATGTACCACTTTGCGGGAGCGA
ACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGACTGCAAGACATC
GAGCTAGTG