mRNA_P-littoralis_Contig100.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.73.1
Unique NamemRNA_P-littoralis_Contig100.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:280802..281326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789339.3233938-CDS-P-littoralis_Contig100:280801..2813261680789339.3233938-CDS-P-littoralis_Contig100:280801..281326Pylaiella littoralis U1_48CDSP-littoralis_Contig100 280802..281326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.73.1prot_P-littoralis_Contig100.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 280802..281326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.73.1

>prot_P-littoralis_Contig100.73.1 ID=prot_P-littoralis_Contig100.73.1|Name=mRNA_P-littoralis_Contig100.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MFDVTNLLSHHLSANMWSKRLRTHGFDQSRDASTTRTEQLRPYTGRPVST
TRLVSDCRTQPTQKQHPATIKLPVLELFPTRDNLQHSPRIFRYPALNCPR
DLGENESTSCTHVPESNGVTSPGEPRLRSPPSPASAKALAASPRKPRPTI
PGVGPTVRWSPHLVVSRASHQGRRS
back to top

mRNA from alignment at P-littoralis_Contig100:280802..281326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.73.1 ID=mRNA_P-littoralis_Contig100.73.1|Name=mRNA_P-littoralis_Contig100.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig100:280802..281326+ (Pylaiella littoralis U1_48)
ATGTTTGACGTCACCAACCTGTTGTCGCACCATCTGAGTGCGAATATGTG
GAGCAAACGACTGCGAACCCACGGCTTTGATCAAAGCCGCGACGCGTCCA
CCACACGCACAGAGCAGCTCAGACCCTACACCGGCCGCCCGGTTTCAACG
ACTAGGCTTGTCTCTGACTGCAGAACGCAGCCAACGCAGAAACAGCACCC
CGCCACGATTAAATTGCCAGTGCTCGAACTGTTTCCGACGAGGGACAACC
TACAACATTCTCCACGTATTTTTCGGTACCCAGCACTCAACTGCCCACGA
GACCTAGGGGAAAACGAAAGCACATCTTGCACCCACGTACCTGAATCCAA
TGGTGTGACCTCTCCCGGCGAACCAAGGCTACGCTCACCCCCATCCCCAG
CGTCCGCCAAGGCACTCGCCGCGAGCCCTCGCAAACCACGCCCCACCATC
CCCGGAGTTGGTCCCACCGTGCGATGGAGCCCGCACCTCGTTGTTTCTAG
AGCGTCCCACCAAGGCCGACGAAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig100:280802..281326+

>mRNA_P-littoralis_Contig100.73.1 ID=mRNA_P-littoralis_Contig100.73.1|Name=mRNA_P-littoralis_Contig100.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig100:280802..281326+ (Pylaiella littoralis U1_48)
ATGTTTGACGTCACCAACCTGTTGTCGCACCATCTGAGTGCGAATATGTG
GAGCAAACGACTGCGAACCCACGGCTTTGATCAAAGCCGCGACGCGTCCA
CCACACGCACAGAGCAGCTCAGACCCTACACCGGCCGCCCGGTTTCAACG
ACTAGGCTTGTCTCTGACTGCAGAACGCAGCCAACGCAGAAACAGCACCC
CGCCACGATTAAATTGCCAGTGCTCGAACTGTTTCCGACGAGGGACAACC
TACAACATTCTCCACGTATTTTTCGGTACCCAGCACTCAACTGCCCACGA
GACCTAGGGGAAAACGAAAGCACATCTTGCACCCACGTACCTGAATCCAA
TGGTGTGACCTCTCCCGGCGAACCAAGGCTACGCTCACCCCCATCCCCAG
CGTCCGCCAAGGCACTCGCCGCGAGCCCTCGCAAACCACGCCCCACCATC
CCCGGAGTTGGTCCCACCGTGCGATGGAGCCCGCACCTCGTTGTTTCTAG
AGCGTCCCACCAAGGCCGACGAAGC
back to top