mRNA_P-littoralis_Contig100.159.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.159.1
Unique NamemRNA_P-littoralis_Contig100.159.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:572319..574146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size410
Hectar predicted targeting categoryother localisation
Exons4
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789339.1583874-UTR-P-littoralis_Contig100:572318..5723481680789339.1583874-UTR-P-littoralis_Contig100:572318..572348Pylaiella littoralis U1_48UTRP-littoralis_Contig100 572319..572348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789339.1701183-CDS-P-littoralis_Contig100:572348..5723951680789339.1701183-CDS-P-littoralis_Contig100:572348..572395Pylaiella littoralis U1_48CDSP-littoralis_Contig100 572349..572395 +
1680789339.1798468-CDS-P-littoralis_Contig100:572894..5730571680789339.1798468-CDS-P-littoralis_Contig100:572894..573057Pylaiella littoralis U1_48CDSP-littoralis_Contig100 572895..573057 +
1680789339.1887567-CDS-P-littoralis_Contig100:573211..5733401680789339.1887567-CDS-P-littoralis_Contig100:573211..573340Pylaiella littoralis U1_48CDSP-littoralis_Contig100 573212..573340 +
1680789339.2014859-CDS-P-littoralis_Contig100:574107..5741461680789339.2014859-CDS-P-littoralis_Contig100:574107..574146Pylaiella littoralis U1_48CDSP-littoralis_Contig100 574108..574146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.159.1prot_P-littoralis_Contig100.159.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 572349..574146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.159.1

>prot_P-littoralis_Contig100.159.1 ID=prot_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MLATTEVAVTFGAHRRRKRAGSSTAAVATTREGNGKRWKDRLRLRPQPIQ
PHGLEVQDSPEPESVSTPRQQGAIGARSAMAEPPVMMLVLLLIATAMVSV
QRLRSAGRRAATHHPGLGGGSGGGGG
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mRNA from alignment at P-littoralis_Contig100:572319..574146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.159.1 ID=mRNA_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1828bp|location=Sequence derived from alignment at P-littoralis_Contig100:572319..574146+ (Pylaiella littoralis U1_48)
CCGGTAGCCTCTGCTGGGTCAGCGCTGGTGATGCTCGCCACCACCGAGGT
CGCAGTGACCTTCGGAGCCCACCGCAGGTCAGGCGTGCGTTTCGTACGGG
ACGCGTCAATGGCTTGAGACATACTTTTTCGGAGACAGGGGGGGTTGACT
AAGATACTGGGGCATGACAGGCACGTCTTCAAGCCCAAAAATCACATACC
GGTAAACGAGTACCATACCCCCCTCCCCCCCCCGACCCCGACGAATGGTG
ATGTTGCAAGCGATGGTGGGTGTTGTAGTAAACATTTGACCTATGAGCGT
TGCCACAGCCGATTGCAGGGGGGCTGCTGCGTGGCGCATAAAGGGAGGTG
ATGCTTGCCACGTATGGGGGTGGCGGCACATGCATCAGTTGATGCATGGC
ATCTCGTACTACAGCCTTCCCCGCGATTCTTCTTCTGTTTTGTTTTTTTC
CAAAAACCTGTTGACCTTGCCCCCCCCCGCCCCAACGAATAAACCAATCC
GAAACAACGCACAAACACAACGCAACCCGACATGCCGCTGTACAACAATG
CAAATCCTTCATTTCGTATTTGACAGGAGGAAACGGGCGGGCAGCAGCAC
TGCTGCTGTTGCAACGACGAGGGAGGGCAACGGCAAGCGGTGGAAGGACC
GGCTCCGGTTGCGGCCCCAACCCATTCAGCCACATGGCCTCGAGGTCCAG
GACTCGCCGGAACCGGAGTCAGTTTCAACACCGCGACAGGTGTGTGCGTA
GTCGGGCAGTTCGTGCCTGTTCTGGGGGAACTGCAGATATTTCGACGAGC
CTGTGGTGCTTTCTTGTCTTATCTGATTTTTATTTTTGTGTAACTGTCTC
CTGCGCTGCTTTCGTTTCCGCGCGCGTTGCTCCACTTGTGCAGCAAGGAG
CGATCGGCGCTCGATCGGCGATGGCCGAACCGCCTGTGATGATGCTGGTG
CTGCTTCTCATCGCTACGGCGATGGTGTCCGTGCAACGCCTGAGAAGCGC
AGGCCGGAGGGCCGCGACCCACGTGAGATAAAATACCACTGCTGTATCGA
TTATATTATTCCCTCACATCGTGCGGGCGTGTATCACATGTATGATAGCA
TGGAATGGTGGGCGAGCAGCACCGCAGCACCCTGATGATGCTCGAGAGAC
TGTCGCGGGCTGTGTACGACATGAAGTGGAAGATTCTGCTGGACAACAGG
CGTTTGTGTTCTCTCTGTCACTCCTCTCTCTCTCTCTCTCTTTTCCCTCT
TTTGTGGGGGTAGGGTCAAAACACGACGCATCTGTACACCAAGGAATGTG
TTGCATATGCAAAAGTCATTTTTCGCATCGCGCCGCCGTATCTACCTGAT
GAGCCATTTCCATGTTTAAGTCAGTTTTGTTTTGTTGTTCACCGGAGCAG
ATTGCCGCTGCTGGCGCTGCTCCTCGCGTTGCCCGGCTGTATCTCAAGTC
GCCCGCCGCCATGGCCGTAGCCCCAGCGCCCACAGAATTCCGTGGAACAA
TCTCCTGAAAACAAAACGGGAGAGAGCGAACACACACGGTAGTTTCACGA
GCAATGATAAAAAATTCCGTTTTGGTCGTCGAGCTGTCAGCACAGGTAGC
CGGGCACAGCTCTCTTTTTGTCCGAAAACACCGCACCCTGTTCCCGCCGC
GCCTCGCCATCCTTTTTTACCATCCCCCACCAAAACCAGCTGGTATGTAC
ATTGAGACCACATTACAGCTTACCGGTATTTCCGTGTGCCACCCCGTCCT
GTCTTACTCATCTTCCGGATACACGTGGATTCGTCGCAGCATCCGGGCCT
CGGTGGTGGTAGTGGTGGTGGTGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:572319..574146+

>mRNA_P-littoralis_Contig100.159.1 ID=mRNA_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig100:572319..574146+ (Pylaiella littoralis U1_48)
ATGCTCGCCACCACCGAGGTCGCAGTGACCTTCGGAGCCCACCGCAGGAG
GAAACGGGCGGGCAGCAGCACTGCTGCTGTTGCAACGACGAGGGAGGGCA
ACGGCAAGCGGTGGAAGGACCGGCTCCGGTTGCGGCCCCAACCCATTCAG
CCACATGGCCTCGAGGTCCAGGACTCGCCGGAACCGGAGTCAGTTTCAAC
ACCGCGACAGCAAGGAGCGATCGGCGCTCGATCGGCGATGGCCGAACCGC
CTGTGATGATGCTGGTGCTGCTTCTCATCGCTACGGCGATGGTGTCCGTG
CAACGCCTGAGAAGCGCAGGCCGGAGGGCCGCGACCCACCATCCGGGCCT
CGGTGGTGGTAGTGGTGGTGGTGGCGGC
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