mRNA_P-littoralis_Contig1272.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1272.13.1
Unique NamemRNA_P-littoralis_Contig1272.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1272.13.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.980e-18
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 REAAGGSPAADEILAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 186
            REAA   PAADEI AVQDEIRGVE  IED E+ET +V KKIDD+EAA A G+ YLG+TDPEA
Sbjct:   29 REAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEA 90
[Close]
BLAST of mRNA_P-littoralis_Contig1272.13.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.760e-17
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 REAAGGSPAADEILAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 186
            REAA   PAADEI AVQD+IRGVE   ED EKET +V KKIDD+EAA A GS YLG+TDPEA
Sbjct:   22 REAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEA 83
[Close]
BLAST of mRNA_P-littoralis_Contig1272.13.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-7
Identity = 37/69 (53.62%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 REAAGGSPAADEILAVQDEIRGVEAMIED-------VEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 186
            REAA GSPAADEI AVQ                    E+ET +V KKID +EAA A GS YLG+TDPEA
Sbjct:   22 REAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEA 90
[Close]
BLAST of mRNA_P-littoralis_Contig1272.13.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.800e-7
Identity = 36/63 (57.14%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 REAAGGSPAADEILAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAA-FAEGSGYLGITDPEA 186
            REAAGGSPAADEI AVQ                      KIDDVEAA  A GSGYLG+TDPEA
Sbjct:   29 REAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEA 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1272.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPP1_ECTSI5.980e-1872.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI2.760e-1772.58Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.460e-753.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI5.800e-757.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1272contigP-littoralis_Contig1272:38062..38247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789566.1714242-CDS-P-littoralis_Contig1272:38061..382471680789566.1714242-CDS-P-littoralis_Contig1272:38061..38247Pylaiella littoralis U1_48CDSP-littoralis_Contig1272 38062..38247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1272.13.1prot_P-littoralis_Contig1272.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1272 38062..38247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1272.13.1

>prot_P-littoralis_Contig1272.13.1 ID=prot_P-littoralis_Contig1272.13.1|Name=mRNA_P-littoralis_Contig1272.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
REAAGGSPAADEILAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAE
GSGYLGITDPEA
back to top

mRNA from alignment at P-littoralis_Contig1272:38062..38247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1272.13.1 ID=mRNA_P-littoralis_Contig1272.13.1|Name=mRNA_P-littoralis_Contig1272.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1272:38062..38247+ (Pylaiella littoralis U1_48)
CGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGCGGTCCA
GGATGAGATCCGTGGTGTCGAGGCCATGATCGAGGATGTCGAGAAGGAGA
CGAAAAAGGTGGCCAAGAAGATTGATGATGTTGAGGCTGCTTTTGCTGAG
GGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1272:38062..38247+

>mRNA_P-littoralis_Contig1272.13.1 ID=mRNA_P-littoralis_Contig1272.13.1|Name=mRNA_P-littoralis_Contig1272.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1272:38062..38247+ (Pylaiella littoralis U1_48)
CGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGCGGTCCA
GGATGAGATCCGTGGTGTCGAGGCCATGATCGAGGATGTCGAGAAGGAGA
CGAAAAAGGTGGCCAAGAAGATTGATGATGTTGAGGCTGCTTTTGCTGAG
GGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCC
back to top