mRNA_P-littoralis_Contig1270.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1270.11.1
Unique NamemRNA_P-littoralis_Contig1270.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1270.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1270contigP-littoralis_Contig1270:39889..40686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size798
Hectar predicted targeting categorysignal peptide
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.5811894-UTR-P-littoralis_Contig1270:39888..401511680789565.5811894-UTR-P-littoralis_Contig1270:39888..40151Pylaiella littoralis U1_48UTRP-littoralis_Contig1270 39889..40151 -
1680789565.6089413-UTR-P-littoralis_Contig1270:40658..406861680789565.6089413-UTR-P-littoralis_Contig1270:40658..40686Pylaiella littoralis U1_48UTRP-littoralis_Contig1270 40659..40686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.5996544-CDS-P-littoralis_Contig1270:40151..406581680789565.5996544-CDS-P-littoralis_Contig1270:40151..40658Pylaiella littoralis U1_48CDSP-littoralis_Contig1270 40152..40658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1270.11.1prot_P-littoralis_Contig1270.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1270 40152..40658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1270.11.1

>prot_P-littoralis_Contig1270.11.1 ID=prot_P-littoralis_Contig1270.11.1|Name=mRNA_P-littoralis_Contig1270.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MFKNAFLAFLAVVDFPLELRCWLWGIFPQIVSGDAIMKLSTNFATKIQIA
KSRSSRTIDMDRGVILEKMTLLSPIAFGYSVRFVIGAGEAGGHSPMWLSP
GNRRSELFHLSKRGKEENETPDNFTDEQAEKFEGWLNGKKSGMDAVDRLT
YLQLQELYRLIFDTGVSK*
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mRNA from alignment at P-littoralis_Contig1270:39889..40686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1270.11.1 ID=mRNA_P-littoralis_Contig1270.11.1|Name=mRNA_P-littoralis_Contig1270.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig1270:39889..40686- (Pylaiella littoralis U1_48)
CCTGGACAAACAATCCAGGTTGTGCGACATGTTCAAGAACGCCTTCCTCG
CCTTCCTTGCTGTCGTCGACTTCCCGCTCGAGCTTCGCTGTTGGCTGTGG
GGTATTTTCCCCCAAATTGTCAGTGGCGACGCGATCATGAAGTTGTCTAC
GAACTTCGCGACCAAGATCCAAATTGCGAAATCGAGGTCATCGAGGACGA
TCGACATGGACAGGGGCGTCATCCTGGAAAAGATGACCCTGCTCTCACCG
ATAGCTTTCGGCTACAGCGTTAGGTTTGTGATTGGAGCTGGGGAGGCGGG
CGGCCATTCTCCTATGTGGCTTTCGCCGGGGAACCGGCGTTCCGAGCTCT
TCCATTTGTCCAAACGGGGCAAGGAAGAGAACGAGACCCCCGACAACTTC
ACGGATGAGCAGGCGGAAAAGTTCGAGGGGTGGCTGAATGGGAAGAAGAG
CGGCATGGACGCTGTTGACAGGTTGACGTATCTACAGCTACAAGAGTTGT
ATCGTTTAATCTTCGACACGGGAGTCTCAAAGTGAGTTTATTCATATTCT
GCTCTAGAACATCGCCATTTATCAAAGATCATGGTAACCCTGTTTACTAT
CAAACCACGCGCAAGTAATGAGAAGGCCGTAATTTTGGTGTTGGTTGCTG
CGCACGTCGTGGCCGGAAACTTTCATACGTTGACACATTCCAAAGCTCGA
AAGATCATGTCCTTACATCCTCTGGCTGGTGTTGACGAGACTCACATGCA
TCACCGCCCACCGAAAAATCGGTTATTACTCTTGATCGCGCAGGTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1270:39889..40686-

>mRNA_P-littoralis_Contig1270.11.1 ID=mRNA_P-littoralis_Contig1270.11.1|Name=mRNA_P-littoralis_Contig1270.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1270:39889..40686- (Pylaiella littoralis U1_48)
ATGTTCAAGAACGCCTTCCTCGCCTTCCTTGCTGTCGTCGACTTCCCGCT
CGAGCTTCGCTGTTGGCTGTGGGGTATTTTCCCCCAAATTGTCAGTGGCG
ACGCGATCATGAAGTTGTCTACGAACTTCGCGACCAAGATCCAAATTGCG
AAATCGAGGTCATCGAGGACGATCGACATGGACAGGGGCGTCATCCTGGA
AAAGATGACCCTGCTCTCACCGATAGCTTTCGGCTACAGCGTTAGGTTTG
TGATTGGAGCTGGGGAGGCGGGCGGCCATTCTCCTATGTGGCTTTCGCCG
GGGAACCGGCGTTCCGAGCTCTTCCATTTGTCCAAACGGGGCAAGGAAGA
GAACGAGACCCCCGACAACTTCACGGATGAGCAGGCGGAAAAGTTCGAGG
GGTGGCTGAATGGGAAGAAGAGCGGCATGGACGCTGTTGACAGGTTGACG
TATCTACAGCTACAAGAGTTGTATCGTTTAATCTTCGACACGGGAGTCTC
AAAGTGA
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