mRNA_P-littoralis_Contig127.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.105.1
Unique NamemRNA_P-littoralis_Contig127.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: D7FXU6_ECTSI (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXU6_ECTSI)

HSP 1 Score: 822 bits (2124), Expect = 6.710e-291
Identity = 432/449 (96.21%), Postives = 447/449 (99.55%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARLLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDMVDVKEEGSE 1602
            MLVLFETPAGYALFKMTNESILKDADGIYDEF+TPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAV+DSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNL+AMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKI+NDNMMYAK+VVRMGVRTECKNCDFSDI+EDEDM KDLKEAAEVSMGTEIT+IDIVSIKSLADQVVALS+YRLQLS+YLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKC+LAIRVDALADETDT IG++SR+KVEMRLRQLEGGARLLEAAPKTPTQVKKYDSKAAVAGTPKT+STGEDMV+VKEEGSE
Sbjct:    1 MLVLFETPAGYALFKMTNESILKDADGIYDEFSTPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVSDSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLKAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIINDNMMYAKVVVRMGVRTECKNCDFSDIMEDEDMVKDLKEAAEVSMGTEITMIDIVSIKSLADQVVALSEYRLQLSEYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCALAIRVDALADETDTTIGIESRSKVEMRLRQLEGGARLLEAAPKTPTQVKKYDSKAAVAGTPKTFSTGEDMVEVKEEGSE 449
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A835YZD1_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD1_9STRA)

HSP 1 Score: 624 bits (1610), Expect = 1.430e-214
Identity = 333/455 (73.19%), Postives = 381/455 (83.74%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARLLEAAPKTPTQVKKYDSKAAVA-GT----PKTYSTGEDMVDVKEEGSEK 1605
            ML LFETPAGYALFK+ +E  ++++  +  EF TPEKAA+ VKL AF  F DTA AVAA+ +MI+ KMGK+  KFLTKN+VKKELKDKLAVADSKL   IKDKL IKC+NDSGVMELMRGIR QLDGLL  VG+ NL+AMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRV+EW+GWHFPEMAKI+NDNM YAK V+RMG R  C+  DFSDI+ D+ +E  LKE AE+SMGTEIT +D+ SI +LA+QVVALS+YR+QL DYL++RM AIAPNLTI+VGELVGARLIAHAGSL+NLAK PAST+QILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APKNKGK+SRVLAAK +LA+RVDA+ + TDT +G++SRAKVE R+RQLEGG RL  A  KTP  VKKYD KAA A GT    P  Y+  EDMV   E  ++K
Sbjct:    1 MLALFETPAGYALFKIADEGKVQESKDLAKEFETPEKAAKMVKLLAFSAFEDTASAVAAAADMIEGKMGKASAKFLTKNMVKKELKDKLAVADSKLGGVIKDKLEIKCINDSGVMELMRGIRLQLDGLLVGVGEQNLKAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVREWYGWHFPEMAKILNDNMHYAKCVLRMGTRDRCRAHDFSDIIGDDAIEHTLKENAEISMGTEITEMDLKSISALAEQVVALSEYRIQLYDYLKNRMAAIAPNLTILVGELVGARLIAHAGSLLNLAKHPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKNKGKVSRVLAAKTALAVRVDAMGETTDTTLGLESRAKVEARIRQLEGGTRLATAGAKTPVGVKKYDPKAAKATGTNGAAPPVYNEAEDMVVEAEPSAKK 455
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: M4C0Z6_HYAAE (Nop domain-containing protein n=29 Tax=Peronosporaceae TaxID=4777 RepID=M4C0Z6_HYAAE)

HSP 1 Score: 555 bits (1429), Expect = 6.190e-187
Identity = 294/440 (66.82%), Postives = 353/440 (80.23%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARLLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDM 1575
            MLVLFET AG+ALFK+ +E+ L  AD ++ +FAT EKA + VKLK F  F DT +AVAA+T+M+D KMGKSL+KFL KN+V   LKDKLAV+D  L   IK+KLSI CVNDS V E+MRGIR  ++ L+T + DD+L+AM LGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTY+MRV+EWFGWHFPEM KIV DN+ YAK V++MG+R++ K+ DFSD+L  ED+E  ++E  EVSMGT+I+  D+ +I +L +QV++L++YR QL DYL++RM AIAPNLT+MVGELVGARLIAHAGSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APK+KGKISRVLAAK +LA+RVDAL D T+  IG D+RAKVE R+RQLE G       P +  +VK    K     T  TY+T  DM
Sbjct:    1 MLVLFETAAGHALFKVQDEAKLASADDVFKQFATSEKATKVVKLKGFNAFKDTIEAVAAATDMVDGKMGKSLRKFLKKNVVDAGLKDKLAVSDKALGALIKEKLSIACVNDSAVNEIMRGIRANMNTLITGLKDDDLKAMTLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYSMRVREWFGWHFPEMGKIVTDNLQYAKCVLKMGMRSQVKSLDFSDVLS-EDVEASMREVCEVSMGTDISQEDLTNISALCEQVISLTEYRAQLFDYLKNRMNAIAPNLTVMVGELVGARLIAHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKHKGKISRVLAAKTALAVRVDALGDATEATIGFDNRAKVEARMRQLENG---FSGVPNSNGKVKNEAKKYTKTETSTTYNTDADM 436
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: K3WSU8_GLOUD (Nop domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU8_GLOUD)

HSP 1 Score: 547 bits (1409), Expect = 9.920e-184
Identity = 292/441 (66.21%), Postives = 353/441 (80.05%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGAR-LLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDM 1575
            MLVLFET AG+ALFK+ +ES L  AD ++  F T +KA + +KLK F  F DT +AVAA+T+M+D K+GK+LKKFL KNIV   LKDKLAV+D  L   IK+K+ I+CV+D+ V E+MRGIR  ++ L++ + D++L++M LGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRV+EWFGWHFPEM KIV DN+ YAK V++MGVR+  KN DFSDIL  ED+E  ++E  EVSMGT+I+  D+ +I SL +QV++L++YR QL DYL++RM AIAPNLT+MVGELVGARLIAHAGSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APK+KGKISRVLAAK +LA+RVDAL D T+  IG D+RAKVE R+RQLE G    +    KT  +VKKY        T KTY+T  D+
Sbjct:    1 MLVLFETAAGHALFKVQDESKLASADDVFKHFETADKANKVLKLKGFNAFKDTTEAVAAATDMVDGKVGKALKKFLKKNIVDAGLKDKLAVSDKALGGLIKEKMGIQCVHDTAVNEVMRGIRANMNSLISGLEDEDLKSMTLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVREWFGWHFPEMGKIVTDNLQYAKCVLKMGVRSNVKNLDFSDILS-EDVEASMREVCEVSMGTDISEEDVTNISSLCEQVISLTEYRAQLFDYLKNRMNAIAPNLTVMVGELVGARLIAHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKHKGKISRVLAAKTALAVRVDALGDATEATIGFDNRAKVEARVRQLENGLTGAVSGKGKTKNEVKKY----VKPETTKTYNTEADI 436
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A8K1CTM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTM6_PYTOL)

HSP 1 Score: 547 bits (1409), Expect = 9.920e-184
Identity = 291/450 (64.67%), Postives = 357/450 (79.33%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGAR-LLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDMVDVKEEGSE 1602
            MLVLFET AG+ALFK+ +ES L +AD ++  F TPEKA + +KLK F  F DT +AVAA+T+M+D K+GK LKKFL KNIV   LKDKLAV+D  L   IK+KL I+C++D+ V E+MRG+R  ++ L++ + D++L++M LGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTY+MRV+EWFGWHFPEM KIV DN+ YAK V++MG+R++ KN DFSDIL  ED+E  ++E  EVSMGT+I+  D+ +I SL +QV++L++YR QL DYL++RM AIAPNLT+MVGELVGARLIAHAGSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APK KGKISRVLAAK +LA+RVDAL D T+ +IG D+RAKVE R+RQLE G   ++    KT  + KKY      A   K Y+   DM   K+  S+
Sbjct:    1 MLVLFETAAGHALFKVQDESKLANADDVFKHFQTPEKANQVLKLKGFNAFKDTTEAVAAATDMVDGKVGKGLKKFLKKNIVDAGLKDKLAVSDKALGGIIKEKLGIQCIHDTAVNEIMRGVRANMNSLISGLEDEDLKSMTLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYSMRVREWFGWHFPEMGKIVTDNLQYAKCVLKMGMRSQVKNLDFSDILS-EDVEASMREVCEVSMGTDISEEDVTNIASLCEQVISLTEYRAQLFDYLKNRMNAIAPNLTVMVGELVGARLIAHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKYKGKISRVLAAKTALAVRVDALGDATEASIGYDNRAKVEARVRQLENGLTGVISGKGKTKNEAKKY----VKADGAKNYNAEADMTVSKKRKSD 445
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A4D9DD53_9STRA (Nop domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD53_9STRA)

HSP 1 Score: 545 bits (1403), Expect = 2.230e-182
Identity = 295/452 (65.27%), Postives = 356/452 (78.76%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARL-----LEAAPKTPTQVKKYDSKAAVA-GTPKTYSTGEDMVDVKEE 1593
            ML+LFETPAGYALFK+  ES L+D + ++ EF  PEKA+  VKLKAF  F  TA+AVAA++++I+S +GK LKKFL K+I  KE+ ++LAVAD KL   IKDKL +         EL RG+R QLD LLT + D NL+ M+LGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRV+EW+GWHFPE+ KIVNDN+ YAK+VVR+G+RT  K+ D SDIL D+ +E+ +KE+AE+SMG EI+  D+ SI+SLA +VV L+ YR+ L +YL++RM AIAPNLTIMVGELVGARLIAHAGSL+NLAK PAST+QILGAEKALFRALKTKHDTPKYGLIYHASLIGQA PK+KGKISRVLAAK +LAIRVDA+ DETDT++G ++R+KVE RLRQLEGG +      +  +        KYD KAA+  G    Y+   DMV V  E
Sbjct:    1 MLLLFETPAGYALFKVLKESKLQDVENLWKEFEDPEKASSIVKLKAFRPFDGTAEAVAAASDIIESNLGKELKKFLKKSIKDKEMSEQLAVADHKLGGLIKDKLGLNIATGEIASELFRGVRTQLDSLLTGLSDSNLKQMQLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVREWYGWHFPELVKIVNDNVQYAKLVVRVGMRTGFKSQDLSDILGDDAVEQSVKESAEISMGQEISENDLASIRSLAQEVVDLAAYRINLFEYLKNRMHAIAPNLTIMVGELVGARLIAHAGSLLNLAKHPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAQPKHKGKISRVLAAKTALAIRVDAMGDETDTSMGEEARSKVEFRLRQLEGGHKTSLTGGMRGSSSGNGGPAKYDKKAALGEGEGDGYNEASDMVGVTTE 452
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A812NHD2_SYMMI (NOP5-2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NHD2_SYMMI)

HSP 1 Score: 543 bits (1399), Expect = 4.960e-182
Identity = 293/442 (66.29%), Postives = 352/442 (79.64%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGG-ARLLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDMV 1578
            ML+LFET AGYALFK+     L +   I+D F   +K A  VKLKAF  F +T +AV A+T +I++K+ K+LKKFL KNI+ K ++D+LAVAD+KL   +K+K+ I+CV+   VME+ RGIR Q+D LL  V D  LR+M+LGLSHSLSRYKLKFSADKVD MIVQAIGLLD+LDKEINTYAMRV+EW+GWHFPEMA+I++DNM YAKIV+RMG+RTECK  DFSDIL DE +E+ LK+ AE SMGTEI+  D+ +IK+L +QV++LS+YR+QL DYL++RM AIAPNLT+MVGELVGARL+AHAGSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APKNKGKISRVLAAK +LAIRVDAL D +   I ++SR KVE R+RQLEGG  RL  A    P    KYD+  A A  P  +S   DMV
Sbjct:    1 MLLLFETSAGYALFKV-QAGKLGEVSDIWDAFQEKDKGANIVKLKAFEPFENTTEAVVAATSLIENKLDKNLKKFLKKNIISKSVEDELAVADTKLGGLLKEKMDIQCVHSDKVMEIFRGIRSQMDTLLAGVEDGALRSMQLGLSHSLSRYKLKFSADKVDIMIVQAIGLLDDLDKEINTYAMRVREWYGWHFPEMARILSDNMFYAKIVLRMGMRTECKKYDFSDILGDETLEETLKKTAETSMGTEISESDLTNIKALCEQVISLSEYRIQLFDYLKNRMAAIAPNLTMMVGELVGARLVAHAGSLLNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKNKGKISRVLAAKTALAIRVDALGDSSGPTIAVESRLKVEARIRQLEGGQGRLSIAGGAGPA---KYDAATARALAPPKFSDASDMV 438
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: L1JQ19_GUITC (Nop domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JQ19_GUITC)

HSP 1 Score: 536 bits (1382), Expect = 1.060e-179
Identity = 286/444 (64.41%), Postives = 354/444 (79.73%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARL-LEAAPKTPTQVKKYDSKAAVAGTPKT---YSTGEDM 1575
            MLVL+ETPAGYALFK+T+E  LKD D I + FA P+KA++++KLKAF  F DT++A+ A+T M++S + K LKKFL KNIVKK L ++LAV ++KL   IK+KL + C+ D  V+E+MRG+R  L+ LL    + +L+ MRLGL+HSL R+KLKFS DKVDTM+VQAIGLLDELDKE+NTYAMRV+EW+GWHFPEM KIV +N+ YAK+V  MG+RT C +CDFS IL DE+ E++LKEA ++SMGTEI+  DI +I+SL DQV+ LS+YR+QL +YL +RM+AIAPNLT MVGELVGARLIAHAGSL+NLAK PASTVQILGAEKALFRALK+KHDTPKYGLIYHASLIGQAAPK+KGKISRVLAAKC+L+IRVDAL+      +G++ R  VE RLRQLEGG    L  + K     KKY+SKA   G  K+   Y+  EDM
Sbjct:    1 MLVLYETPAGYALFKVTDEKKLKDVDDIQEVFADPDKASKAMKLKAFQKFEDTSEALVAATAMLESSLSKGLKKFLEKNIVKKGLNEELAVYETKLGKVIKEKLEVPCIYDDKVLEIMRGVRANLEVLLGGTTEQDLKTMRLGLAHSLGRHKLKFSPDKVDTMVVQAIGLLDELDKELNTYAMRVREWYGWHFPEMGKIVTENVPYAKVVKLMGMRTNCVSCDFSSIL-DEETEQELKEAVQISMGTEISDDDINNIQSLCDQVIQLSEYRVQLYEYLLNRMRAIAPNLTTMVGELVGARLIAHAGSLMNLAKHPASTVQILGAEKALFRALKSKHDTPKYGLIYHASLIGQAAPKHKGKISRVLAAKCALSIRVDALSQGDIPQVGVEHRLAVENRLRQLEGGTITNLSGSAKGKPNAKKYESKADEDGMAKSSSKYNDAEDM 443
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A7S1U4X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4X5_9STRA)

HSP 1 Score: 531 bits (1368), Expect = 7.970e-178
Identity = 274/407 (67.32%), Postives = 335/407 (82.31%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGGARL 1476
            MLVLFETPAGYALFK T+   +K  D +Y EF T +KA+  +KLKAF  F D  +AVAA+T +++  + K LKKFL KN+VKKELKD+LAV D+KL   IK+KL I+CV ++G+ EL+RGIR Q+D L+ +V +  +R M+LGLSH LSRYKLKFS DKVDTMIVQA+GLLD+LDKEINTYAMR +EW+GWHFPEM K++ND + Y++ V +MG+RT C   DFSDILED  +E  LK+AA  SMGTEI+  D+ +I++L DQVV LS+YR+QL +YL++RM AIAPNLT+MVGELVGARLIAH+GSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APK+KGKISRVLAAK +LAIRVDAL +     IG+++RAKVE R+RQL+GGARL
Sbjct:   12 MLVLFETPAGYALFKCTSPGKIKKTDDLYKEFETADKASSLLKLKAFSQFEDITEAVAAATALVEGSLHKGLKKFLNKNVVKKELKDELAVIDAKLGGLIKEKLGIECVANAGINELIRGIRSQMDALIPAVDESIMRTMQLGLSHQLSRYKLKFSPDKVDTMIVQAVGLLDDLDKEINTYAMRAQEWYGWHFPEMKKVINDTIQYSRCVRKMGMRTNCAATDFSDILEDTSVEALLKDAAMTSMGTEISEGDLNNIQALCDQVVNLSEYRVQLFEYLKNRMHAIAPNLTVMVGELVGARLIAHSGSLLNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKHKGKISRVLAAKSALAIRVDALGETEGPTIGIEARAKVEARIRQLDGGARL 418
[Close]
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Match: A0A067CC41_SAPPC (Nop domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CC41_SAPPC)

HSP 1 Score: 527 bits (1358), Expect = 3.120e-176
Identity = 287/450 (63.78%), Postives = 347/450 (77.11%), Query Frame = 1 
Query:  256 MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTFADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAIKDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIVNDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEITIIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQLEGG-ARLLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDMVDVKEEGSE 1602
            MLVLFET AG+ALFK+ +E  L + D I+  FA+ +KA++ VKLKAF  F DT +AVAA+ +  D  +GKSLKKFL K++    + DKLAV D      IK+KL I+CV+D  V ELMRGIR  ++ L++ + D +L+ M LGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRV+EWFGWHFPEM KIV DN+ YA+ VV+MGVRT  K+ DFSDIL   D+E  ++E  EVSMGT+I+  D+++I SL +QV++L++YR QL DYL++RM AIAPNLT+MVGELVGARLIAHAGSL+NLAK PASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQ APK+KGKISRVLAAK +LA+RVDAL D T+  IG D+RAKVE R+RQLE G   +     K  T  KKY  +A  A   K Y+  +DM   K+  +E
Sbjct:    1 MLVLFETAAGHALFKVQDEGKLANVDDIHKHFASSDKASQVVKLKAFNAFKDTTEAVAAAADCTDGTVGKSLKKFLKKHVKDAGVSDKLAVMDKAFGGIIKEKLGIQCVHDKSVDELMRGIRTHMNSLISGLEDQDLKNMTLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVREWFGWHFPEMGKIVTDNLQYARTVVKMGVRTNVKSLDFSDILSS-DVEASMREVCEVSMGTDISEEDVINIGSLCEQVISLTEYRGQLFDYLKNRMNAIAPNLTVMVGELVGARLIAHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQTAPKHKGKISRVLAAKTALAVRVDALGDATEATIGFDNRAKVEARMRQLENGFTGIASGKGKAKTDAKKYVKEATPAT--KVYNDADDMKVQKKRKAE 447
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXU6_ECTSI6.710e-29196.21Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YZD1_9STRA1.430e-21473.19Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
M4C0Z6_HYAAE6.190e-18766.82Nop domain-containing protein n=29 Tax=Peronospora... [more]
K3WSU8_GLOUD9.920e-18466.21Nop domain-containing protein n=2 Tax=Pythiaceae T... [more]
A0A8K1CTM6_PYTOL9.920e-18464.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9DD53_9STRA2.230e-18265.27Nop domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A812NHD2_SYMMI4.960e-18266.29NOP5-2 protein n=1 Tax=Symbiodinium microadriaticu... [more]
L1JQ19_GUITC1.060e-17964.41Nop domain-containing protein n=3 Tax=Guillardia t... [more]
A0A7S1U4X5_9STRA7.970e-17867.32Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A067CC41_SAPPC3.120e-17663.78Nop domain-containing protein n=4 Tax=Saprolegniac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:468029..477421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXU6
Preferred nameNOP58
PFAMsNOP5NT,Nop
Model size2649
Max annot lvl2759|Eukaryota
KEGG koko:K14565
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0015030,GO:0016049,GO:0016070,GO:0016072,GO:0016604,GO:0019899,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033036,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048254,GO:0051117,GO:0051179,GO:0070013,GO:0070761,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons13
Evalue1.73e-295
EggNOG OGsCOG1498@1|root,KOG2572@2759|Eukaryota
Ec32 ortholog descriptionNOP58 subunit of the C/D ribonucleoprotein complex
Ec32 orthologEc-23_001460.1
Descriptionendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size1902
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789564.8391411-UTR-P-littoralis_Contig127:468028..4685201680789564.8391411-UTR-P-littoralis_Contig127:468028..468520Pylaiella littoralis U1_48UTRP-littoralis_Contig127 468029..468520 -
1680789565.0144784-UTR-P-littoralis_Contig127:477166..4774211680789565.0144784-UTR-P-littoralis_Contig127:477166..477421Pylaiella littoralis U1_48UTRP-littoralis_Contig127 477167..477421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789564.855988-CDS-P-littoralis_Contig127:468520..4688361680789564.855988-CDS-P-littoralis_Contig127:468520..468836Pylaiella littoralis U1_48CDSP-littoralis_Contig127 468521..468836 -
1680789564.8664408-CDS-P-littoralis_Contig127:469796..4700501680789564.8664408-CDS-P-littoralis_Contig127:469796..470050Pylaiella littoralis U1_48CDSP-littoralis_Contig127 469797..470050 -
1680789564.876679-CDS-P-littoralis_Contig127:470355..4704361680789564.876679-CDS-P-littoralis_Contig127:470355..470436Pylaiella littoralis U1_48CDSP-littoralis_Contig127 470356..470436 -
1680789564.8871107-CDS-P-littoralis_Contig127:470699..4707711680789564.8871107-CDS-P-littoralis_Contig127:470699..470771Pylaiella littoralis U1_48CDSP-littoralis_Contig127 470700..470771 -
1680789564.8962493-CDS-P-littoralis_Contig127:471315..4714891680789564.8962493-CDS-P-littoralis_Contig127:471315..471489Pylaiella littoralis U1_48CDSP-littoralis_Contig127 471316..471489 -
1680789564.9157355-CDS-P-littoralis_Contig127:471893..4721091680789564.9157355-CDS-P-littoralis_Contig127:471893..472109Pylaiella littoralis U1_48CDSP-littoralis_Contig127 471894..472109 -
1680789564.9262862-CDS-P-littoralis_Contig127:472351..4724441680789564.9262862-CDS-P-littoralis_Contig127:472351..472444Pylaiella littoralis U1_48CDSP-littoralis_Contig127 472352..472444 -
1680789564.9346344-CDS-P-littoralis_Contig127:472928..4730301680789564.9346344-CDS-P-littoralis_Contig127:472928..473030Pylaiella littoralis U1_48CDSP-littoralis_Contig127 472929..473030 -
1680789564.9450974-CDS-P-littoralis_Contig127:473293..4734101680789564.9450974-CDS-P-littoralis_Contig127:473293..473410Pylaiella littoralis U1_48CDSP-littoralis_Contig127 473294..473410 -
1680789564.962927-CDS-P-littoralis_Contig127:473851..4740641680789564.962927-CDS-P-littoralis_Contig127:473851..474064Pylaiella littoralis U1_48CDSP-littoralis_Contig127 473852..474064 -
1680789564.9736524-CDS-P-littoralis_Contig127:474491..4746201680789564.9736524-CDS-P-littoralis_Contig127:474491..474620Pylaiella littoralis U1_48CDSP-littoralis_Contig127 474492..474620 -
1680789564.9908736-CDS-P-littoralis_Contig127:476217..4763071680789564.9908736-CDS-P-littoralis_Contig127:476217..476307Pylaiella littoralis U1_48CDSP-littoralis_Contig127 476218..476307 -
1680789564.9999223-CDS-P-littoralis_Contig127:477121..4771661680789564.9999223-CDS-P-littoralis_Contig127:477121..477166Pylaiella littoralis U1_48CDSP-littoralis_Contig127 477122..477166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.105.1prot_P-littoralis_Contig127.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 468521..477166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.105.1

>prot_P-littoralis_Contig127.105.1 ID=prot_P-littoralis_Contig127.105.1|Name=mRNA_P-littoralis_Contig127.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=634bp
MLVLFETPAGYALFKMTNESILKDADGIYDEFATPEKAAESVKLKAFMTF
ADTADAVAASTEMIDSKMGKSLKKFLTKNIVKKELKDKLAVADSKLANAI
KDKLSIKCVNDSGVMELMRGIRGQLDGLLTSVGDDNLRAMRLGLSHSLSR
YKLKFSADKVDTMIVQAIGLLDELDKEINTYAMRVKEWFGWHFPEMAKIV
NDNMMYAKIVVRMGVRTECKNCDFSDILEDEDMEKDLKEAAEVSMGTEIT
IIDIVSIKSLADQVVALSQYRLQLSDYLRSRMQAIAPNLTIMVGELVGAR
LIAHAGSLINLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLI
GQAAPKNKGKISRVLAAKCSLAIRVDALADETDTNIGMDSRAKVEMRLRQ
LEGGARLLEAAPKTPTQVKKYDSKAAVAGTPKTYSTGEDMVDVKEEGSEK
KKKKKDKSAKKAKKNKSANGDAAEATNGDAAVKEEESTETPKKKKKRKSV
GADVGELVGEEATNGAAAEAAPSSKKKKKRRRKNRRHRGKVKPVVVVRHV
CRVPNILYLLKSWMISPRVSDRKRERARLLALFPSVCSSVCGLAIRYVLV
YEGFQGVLTACATVLSVVRTSRVSRFMVCVLFS*
back to top

mRNA from alignment at P-littoralis_Contig127:468029..477421-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.105.1 ID=mRNA_P-littoralis_Contig127.105.1|Name=mRNA_P-littoralis_Contig127.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9393bp|location=Sequence derived from alignment at P-littoralis_Contig127:468029..477421- (Pylaiella littoralis U1_48)
CAGAAAAACACTGCATGCCTTCGTCACGAATCGCGTAGCGTGTATCACAA
CTTGTGAACTGGACATTGGAGGTGCCCTGCACTGGAAGGCTCGTGCTGCT
GCGGTAGAGCACTCGAACCAAGGCGAGCTTCGGATATTCCTATTTTGGCT
GGCTGTCTGACTGCTGTGCGAGACAACACGGAGCAAACAGATCAGCAGGA
GACGGAGGGGTGGCTGCAGTAGCAGTAGTCCAGAGACAAAGCAGCGGGCG
CAAAGATGTTGGTCCTATTCGAGACGCCGGCGGGGTATGCCTTATTCAAG
GTGGGTGCATGTAACTCTGCTGTTATTCTGCCCAGATGCTTGGCGTTCCT
TGTGGCTTGTCGCCTCTGCTGTGCAATCGTGTTTGAAAGCAGGAGCACCA
TCCACCAAACAATGAAGAAAATACTTGGCACCACGAATCGACGTAGACTG
ATTGATACCTTTATCATGTGACTTGGATAAAGATAGGATTCGTCCACGGC
TGCTTTGCTGCCGGCCCACCCATCTTTACTTGTGCAAGGTAGGTCCTCCT
TCCCATGATGTGCAAAGAGGACACCGTAAGTGTTCGTGACAGATTCACCT
GCCGTGCAGGTCATGTGGAGGGCTGGCGTGCGTAGAGTTGCCCCTATTCA
ACCGGTCGGTGCCCAACAGATGACGTTCTCCTAAGACATGTTCCGCACAC
ACCCTTCGAACAAGTTTCAAGTACTCGGTGTAGGTGTATCTCTCCAAAGT
TACCTGTAGGCGAGATCTCTTTCAAGACCTCGAATAGCGTATCGGTACTG
TAGGCAAGAAGACATTTTCAACGAAAAAACCTCATCACCGCCTTCTCGTT
GTTCACTGCTGCTGTACCACCACCCTCCGCGGTGTCACGTCTCGGCACAC
GCCTCCGAGAGAAGTCGATGAACTCCATACAAGCACGCGTCACTTTTTGG
TTTGAAACATCCACTGCACAGCGGAAGCAGGACGTTCAAGGACTACACCC
CCCTGTGACAATGCACACACATGTATGTCGTGGTCGTTTTACCGAGTAAG
GCTTTAGCATCGTGCTCCGATCGATCACAAACGTCTTGCCTTTCTCCATT
GTCATGTCGTCCAGATGACAAATGAGTCCATCCTCAAGGACGCGGACGGC
ATCTACGACGAGTTCGCGACGCCAGAGAAGGCCGCGGAATCCGTCAAGCT
AAAGGTGGGAAGGGGAAGCGTTTGTTTCTTTTTTTGCCTGAGTGTGCGGA
CGAGGGAGGGAAAAGCTCGGTTCAGGCAGGCGGAGTTCACACCGTGGTTT
GGCGTGGGAACATAGGCAAAGATGCACAGTATTTCGTGGCGAACGGACGG
CAGTTACTCCCGTTCATTGCCCAGGCAAAAGGGTGCGGGGTTTGGCCGCC
AAAAATCTGAAACGACGGAAGTTCGTGCAGCGGTGTCGTGATAAGGGTTG
CGGGGGCGCGCAGAAGACCCAAGAAGTCCGAAACTTGTGTCGCGAAATGC
ATCAAACGTGCGCGGATATCTTGGGTGCTTTCGCCTCTTCCTTCCTCACC
TAACCCTCTTTTCCTCCAATTTGTGCCGCTCGCGTGAAGCAACGACCACG
ATTCGGTGGTGGACAGATCCAAACAAACCACACATGTGAAGACTGGCGGC
AAAGCCCGCACGCGCAAACTGACAGTTCAGTAATTTCCTAGTATTGTAAC
AGTCCTATACACGCTTCACGAAAACCTGGTGAATTGGTACGTACGAAGGC
TGTATTTCCTTCACACTGAAGACTGTAAGCTACGAAGTTGGTGGTCCGTT
CTTACGGACAACATTCGATTCATTTTCGCGATTGTACAGTACCGGGGTTA
GATTTCGTGTAGGATACCCCTAATGTCATATGGATTGCTTCTGTCGGCAT
GATATTGATATTATCCCACTTTCAACTGTACATAATGCTGTCAATGCATT
GATGAACTCCAGCTGACTGCCGCAGAACATAGCATGAAAATATAACCAAC
AGGCGCATTTTTATTGAAGCCGCAATCCCTCCTCAAACCTCATCATCGGA
TCCTGTCATGGAGGTTGTAGATACAAGCGGGGATGAAGAACACGCCGGCG
AAATCAATACCGCCCTGGATGTGGCAGCAGGAACGTTTACAATGGGTGAA
AAGATCTCCGGAGAAGATCAGGCACCTCCACCTACGGATTTCATTTTCAG
AGGAGGCGAAGGGGGCATCTATGACGAGACGCCCTTCTTCGAGGACGAGG
AACTTTAAAGGAGAGACGAAGAGCATGAACATATGTATGCTAATGTTCTT
CTCTCCTCCCAAGTCCTTCCTCCTCGTCGAATGGCGTCTTGTCATAGATG
CCCCCTTCTCCTCCTTTGGACATGAAATCCGATGGTAGAGGGCCCATGGT
GGAGGTGCCTGATCTTCTCCGGCGATCTTTTCACCCATTGTAAACGTTGC
TGCTGCCCCATCTAGGGTCATGTTGATCTCGCTGGCGTGTTCTTCATCAG
CCTCGCTTGTTTCTACAAGCTCGATGATAGGATCCGATGATGAGGTTTGA
GAAGGAGTTGTGGCCTACAAAAAAACATCCCTGCATCGTTTTTGTTGGCT
AACGCTGGCTCTAGCTTGCGTTGTAGCACCAACAGCTGGCTGCTGCTGAC
GAAGTCTAGCGGAAAAAATATCATGCGTATCATTTTCAGAAGACGACGTG
TCACCATTTTCCGAAAAAAATACTCTTGTACCTCCGAGGCTTGTTCCGCT
TCGTCCCGCAGGCTAAACTCCCTCCGTGGTTTTTCGATCGGTTGTCGGCA
GGCGTTTATGACGTTCGCGGACACAGCGGACGCGGTTGCGGCCTCGACCG
AGATGATCGACAGCAAGATGGGCAAGAGCCTCAAGAAGTTTCTGACGAAG
AACATCGTGAAGAAGGAGCTTAAGGACAAGGTTTGTCGTGGTATCAGCCA
TCGCGCACACATGTGATGCACGCGACTACTGCTTTGCTGATGTTGTTTGT
CGCCGTGGTTGTTGTCGGCTTTTGCCGACCGTGTTGCCTGAAGTGCACTT
CAGGTAACGTCGTGCTGCACCGATGTGTTTTCGGCGACGGATCTAAATAT
GACGATAGAGTCAGCTGCAGTTGACCCTCAGCCTCCTGCAAATTCGAAAG
TAGCCCGTTTTTTTTCAGCGAGTCGACGCTGCTGCTGACAGCATCGTGTT
TTCCCGGAGTTCCATGCCCACCCACCCCTCCGCGTCCAGTCACTTTCTGC
GCCAAAACGTTTTTGTCTGGCCGTATTACCCCGGCTCCATCCTGATTTCC
CCTCACACCGACAAGAAATGATTTCTCCGTGCTACATAACATGACGAAAC
ATGACAGCTCGCGGTGGCAGACTCGAAGCTTGCGAATGCCATCAAGGACA
AGCTGTCCATCAAGTGCGTGAACGACTCGGGTGTGATGGAGCTCATGCGC
GGTATCAGGGGGCAGCTGGACGGGTTGCTGACATCGGTCGGGGATGACAA
CCTCCGAGCGATGCGTCTGGGTCTGAGCCACTCGCTGTCGCGATACAAAC
TCAAGTTCTCGGCAGATAAGGTAAAATATGGGCAATTCTCGTTGGTCTGG
TGTGTTTATGGGGTTGGTGCCGGTAGGAGTTTTTGTTGTGGAAGGGGAGG
CTGAAGGCGGTAGGACTGCACTGTGTTGCGCCTCTTCCTCAAGTCGCCCC
TTTTCTAGGCAAGATATGTACGAGGTTGGGGCTTCAATTGGGCACGGGCG
TTGGTGGTTTACCTCAGGCGGTGGTGGTGGAGGCTGTGTCCTGGTACTGC
AATTCGCACCGGGTGCAAGTTGCAAGTTACTTGTTTCTGTTGTCAGCAAT
TTTTTTTTTGTCACTGGTGGTGGTTTGGTGCTGTGTTCTCGGTAACTCGC
CGTTAACGCCATATCGGCCGTTCTTCAAGAACCACCCGTCCGGCCGTCCT
CCCCGCCCGTCACTCACAAGTTGTGGTCGCAATGCTGTCTGGTGCATTCT
GCGGGTTCCAGGTTGACACAATGATCGTGCAGGCGATCGGCCTCCTTGAC
GAGCTGGACAAGGAGATCAACACGTACGCGATGCGCGTGAAGGAGTGGTT
CGGCTGGCACTTTCCGGAAATGGCAAAGGTATGATGTATTGCGTCATACT
GTTGCGCAGCCTGTGTGTGTTTTTTTTTTATTTCCGTGTGCGTAGACCGT
GGTAGCCGGCTGCGTCAAAAGATCTCTGCCTGTCGTAGCGGGTTGTGGTA
CGACAAGCACCACATGTGCTTCTCTGTTGTTCTTTTTGGTACAACAGCAG
TAGAGACGCTTCTTCCACGGCATTACATCATACGAAGTACGTTTTGTCGT
CGTCGTGTCCTTTGTGTGTTTTGTGCTCTCGGCTGTCGCAGATCGTCAAC
GACAACATGATGTACGCCAAGATTGTGGTGAGGATGGGGGTCCGGACGGA
GTGCAAGAACTGCGACTTCAGCGACATCTTGGAGGACGAGGATGTGAGAG
ACTGCGGTTGTCATGTTGTTTCAACGGTTAGTCACCCGTTTGTAACCACT
GCTACTGCCTCCCTCATATTTCCAGGTCTACTTGCCCTTTATGTTTTCGT
GGAAGCCATTCTATGTTGTAGATCTAGCTGTTCGTTTCCTCGTACTCCAT
CTCGTCAGGTAGGCTGCACGGTCAAGCAGTAGTGTTACATCCGCAAGGTG
TGCGAACAGCGTACCTATGATCCGCAGCAGGAATCTAGAAACGCGAATGT
TGGCACAGTCTCATACGTAACAGCCTCCCTTCATCGCTTCTGTTCGATCA
AGCAGCAGCTTTTCTACCAAGCCACAAGCAGTCCACAAAGGCGGTACGCC
GTACTTAGACACGAGTCTAGAATATGAACGCACACAACGCTGTCGTTTCC
ACCGGGTCAACTTTTTAATGGGCGCGCATCCACTTCTTTTTTTCGTGTTG
ATGCCGATGGATCTTGTTATAATTCAGATGGAGAAGGACTTGAAGGAGGC
CGCCGAAGTTAGCATGGGCACGGAGATCACCATCATTGACATCGTCAGCA
TCAAATCCTTGGCAGACCAGGTAGGTAAAGGGGCACCATTTTTGCTGCAG
GTTGGAGTGGGGTGAGAGGGTCGGCTGCACCGACCGCTAGAGGCTAGGCG
GTAATCGTCCCGCTTTCCACCCGATATTTTCCGCATCGTAGTTTAAATTT
ATTAGCCAATGACATTACTATTGGAGAGATCCCTTCAAATCTGTGCCTCA
CGACATCATGCACACCCCTTTCGCCGGGAAAAACGGCGGCACCCTGTTTT
ATCATAACCCAGGTGGTAGCATTGTCCCAGTACCGGTTGCAGCTCTCGGA
TTACCTTCGCAGCCGCATGCAGGCCATCGCGCCGAACTTGACCATCATGG
TGGGCGAGCTCGTCGGCGCCAGGCTCATCGCGCACGCGGGTTCGTTGATC
AACCTCGCCAAGCAGCCCGCGTCAACGGTGCAGATCCTCGGCGCTGAGAA
GGCGCTCTTCCGCGCGCTTAAGACAAAGGTGCGTCGAATACTTTATGGGA
CGTGGGACCGGTTTTGTTTCTGCTTCCAGGATGTGTCTCGTGTCGCGACA
GTCTTTGTGACTGACTGGGGTACGTCGAGATACGGATGAGCGCTGTCCGG
TTCTGATTCTGCTTTCGTCGTTTCCAGGATGTGCGTGAATGTATGTGCGT
GTTTCGGCGTAACATGACCTCTCCATGTACACTCATGCGGGCTTGTGTTG
TTCTGTGCTAGCGCTTGTATTCACGTGCGTTCGTACTTCATACTTGAAAA
CACCCAAAAAGCTTCCACAAAGCATGTTATTCCAATACCAGTGAGGAAAT
TGGCGGTGACTAACACGCAACAACCCCGGCTGGTCTTGTCTATGTGTTTG
CGTGACTTTGCTTTTCTGTGACGACGGAACAGCACGATACTCCCAAGTAC
GGGCTGATCTACCACGCGAGCCTGATCGGGCAGGCCGCGCCGAAGAACAA
GGGTAAGATATCCCGCGTACTGGCCGCCAAGTGCTCTCTGGCGATCCGCG
TGGACGCTCTAGCCGACGAGACGGACACGAACATCGGGATGGATAGCCGC
GCGAAGGTGTGTCTGATTTAATTGTTCGTTGTTTGTTTTGCCCTTCCGTG
ATTGTTTTGTTGTTGTGTCTGTCTTTCGACCACGGGCTCGTCGCGTTGGC
GATCAGCTGGCTTTCGACCAGGAACTCGTTGTGTTGGCAATGAGCTCATG
TGAACATCAGTAGCAAATACGGTAAATTTGTGCCATGAGCGAAACGTAAA
AGCGGCGCGGTGATGTATTGGGCACGCCGCGTCTAGGCGAGTGCTTCATG
GAATTTGGAGCGAAGTGTGCAATTCATGAGTGCCGGCAACTAACTGCTTC
GCATTTGTTCTTTTTTAACGTGCACATGATAGATCATTGGGCGTGTAGGC
TTCCACCTGTTTTCCTCCGTGCGTTTTTGTCCTTTTTGCGGTATTCACGT
ACTTCTAGCAGTGCACCACGTCCAATTTGTGGTATATGACACTAGACCAA
TGATATGGTGTCGCGTTTGTACAACAGTTTCACCATACTGTCTTCTATTC
CAGACTTTAAGGCTCCTCTGTTTATTTTTTGTGTGTGTTTTGCGCTCAAG
GTGGAAATGCGACTTCGGCAACTCGAGGGAGGAGCGCGCTTGTTGGAGGC
AGCACCAAAGACACCGACGCAGGTTAGTTGATCTCCAAGCTCTCGAGGAA
ACATGGCAAGACATGAAAATTTTTCAGGTGCTCCTGATGGCGCGTGTTGG
TTTATCGAAAAAAAACTCGAAAATGGACTTCCGTTGGTGTTCGTAGACTC
AAATGAGACAGCCGGGGGAGCGGAATTGCCGTATCTGCCAATTTTTGCGG
CGAATTTTGCCAGCCCCTTTCCCTGTTCACCCTACACACACTGATGGTTC
ATTCGTGTGTCGCTTGTACGTTTCGGCTCTTGAAGGTGAAGAAGTACGAC
TCGAAGGCGGCGGTGGCAGGAACACCAAAGACCTACAGCACTGGAGAGGA
CATGGTGGATGTTAAGGTGAGTCACCGTGAGACGCAACGTAATATCTTGA
GAATATGACTTTTGGGGTGGGTTGCCACGTGCAATACCCGACAGATGTAG
GGTACAGCAGTGGTGCGGACGACACATCGTGTGGAACAATTTTCCGTTCT
TGTTGGTTGATAGTTCCGTCAGTGCCTACCCGACACGCACAAGAGTGGTG
GTGTGAGAAAAATCCGTCGTGCACACTTGTATCGCATGAGACGAATGTGG
GACGGTGAATGTCTCGTCCAACGTAGATTCCTGCTGACCTCTCTCCTCTC
TCGTTGGTTGTCCGCAAACAGGAGGAAGGTTCCGAGAAAAAGAAGAAGAA
AAAAGACAAGAGCGCTAAGAAGGCCAAGAAGAACAAGTCTGCCAACGGAG
ATGCCGCCGAGGCTACCAACGGGGACGCCGCGGTTAAGGAGGAGGAAAGC
ACAGAAACCCCCAAGAAAAAGAAAAAGCGGAAATCCGTCGGAGCAGATGT
TGGGGAGCTGGTAGGGGAGGAGGCGACGAATGGCGCGGCGGCGGAGGCGG
CACCGTCCTCGAAGAAAAAGAAGAAGCGGAAATCGATGGGGGGAGACGTG
GGGGATGAGGGCGGCATGGAGGCGGGCGAAGGATCGGTGAGTTTTTCGGG
TTTTGGTCGTTTTGCCCCACTGCTGTTTGTTTTATGCTGCATGACAGTGT
TTGCCCTGTTGTCTTGGATGCCCATCATGCTAAGGTCGGCGGTGTGTTTA
GACGCCGGCTGGCCTGTCGGAGCCTGCCAATTTACTTCCGTAGGTGACAT
GGATGCGGCACCACGGTACCCTCAGGACCGGTTTCCCGAGCTCGATTGCT
CCACGACGAGGAGGGTATCATGCTAACGTTATAACAAAAATTTACAGTTT
CGGGAAAAGTGTGCATGATGCGGTTTCAACATCGGTCGCCCTTTTAGGCA
CCAACACGCTGCCTGCTGTCGAGTAGTAGAGCTATCATAATCGGCCCGGG
GTGTCCAGGGTGTCCAATTTTTTGCGAACTACGACATGTACTGTAGACAC
CGAAATATTTGCGAGAAGCGAGGCGACGCTGGTTGGCTCTGGCAGACGTG
AGGGCGGGGAGCGTTTCGTCCTGAATGTTGAACAAATTTTGCCCCCAATT
CAAAAAAGTTCTCCCGAATTTTGTTCGGTTGTGCTTTATTTCTCTCGACC
TAGCCCTCATTCGGCGGCCGTTGCGTCGCCTCTTCGCCGCTCGTGCGATC
AACTCTTCCTCGTTTCTCTCCTGATTACTTTGTTACAGTATACATTTGAT
TGTCCCCTGAATGTTGTAGAAGAACAAACGGCATTCAGACAAACTACAGG
TATCATATCATATCTTCGTCGTAACTTGCGGTAGCACGTGGATTGTATCG
TATGCATCACAGGTGGAGCATTTTTTTCGTTAGGTTGCCCGTCTCTGAAA
ACGAATTCGTTCGTCCCCCATCCTTTGTGCCTTTGTTCTTCGGATTTATG
CTGCTGCTGCTGCTCAGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAAGAA
CAGGAGGCATAGAGGCAAGGTAAAACCGGTCGTCGTTGTTCGGCATGTGT
GTCGTGTCCCAAATATTTTGTACCTACTGAAGTCGTGGATGATTTCCCCG
AGAGTGAGTGACAGAAAAAGAGAGCGAGCGAGATTGTTGGCTCTTTTTCC
CTCTGTGTGTTCCAGTGTTTGTGGTTTAGCAATACGATACGTACTCGTTT
ACGAGGGTTTCCAGGGTGTCTTGACTGCGTGCGCCACGGTTCTGTCCGTG
GTACGTACTTCACGTGTGTCACGTTTCATGGTGTGCGTGCTGTTTTCGTA
ACACCATGCACGCCTTAGTCTTGAGTATGACGTCGGAGTGACTCTGGTCG
ATCGAGCAAAAGTGGACTTTCTAAATTTGGTATCTTGGGTCCGCGCGTGG
TTATCACTGACTTCCCGTTGTACGGCGGTGTATAGGCGAGCGTTGCTCCT
GCTGTCCTTTTGTTCACCTTTCTCTGTGGCGTGGTCAAATAGAGCCCCGA
TAACTCCTTGTGGATTAGAGCTTGCGCGGACGTGTGTGGTGTGTGTTAAC
CAGGCGGTCATATCCACGGTTGGCGGTCAACACGTCTAAATTTATGTTTT
GATCACGTACATATTTAGTTGGAATTTATAGCCACCGGGCGGCACGGCAA
GCACGCGGTTACATTCTTCTTAGTTCATTTTATTTCTCAAGTTTTTGTTT
GCATGACAGATGCTCGGATTGCTCTTATTTTGCAACAAAAAAAAATTTAC
GTCGAGGCACGCGAAGGTCGAACGTACTCGCAACGTCTTGTTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig127:468029..477421-

>mRNA_P-littoralis_Contig127.105.1 ID=mRNA_P-littoralis_Contig127.105.1|Name=mRNA_P-littoralis_Contig127.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1902bp|location=Sequence derived from alignment at P-littoralis_Contig127:468029..477421- (Pylaiella littoralis U1_48)
ATGTTGGTCCTATTCGAGACGCCGGCGGGGTATGCCTTATTCAAGATGAC
AAATGAGTCCATCCTCAAGGACGCGGACGGCATCTACGACGAGTTCGCGA
CGCCAGAGAAGGCCGCGGAATCCGTCAAGCTAAAGGCGTTTATGACGTTC
GCGGACACAGCGGACGCGGTTGCGGCCTCGACCGAGATGATCGACAGCAA
GATGGGCAAGAGCCTCAAGAAGTTTCTGACGAAGAACATCGTGAAGAAGG
AGCTTAAGGACAAGCTCGCGGTGGCAGACTCGAAGCTTGCGAATGCCATC
AAGGACAAGCTGTCCATCAAGTGCGTGAACGACTCGGGTGTGATGGAGCT
CATGCGCGGTATCAGGGGGCAGCTGGACGGGTTGCTGACATCGGTCGGGG
ATGACAACCTCCGAGCGATGCGTCTGGGTCTGAGCCACTCGCTGTCGCGA
TACAAACTCAAGTTCTCGGCAGATAAGGTTGACACAATGATCGTGCAGGC
GATCGGCCTCCTTGACGAGCTGGACAAGGAGATCAACACGTACGCGATGC
GCGTGAAGGAGTGGTTCGGCTGGCACTTTCCGGAAATGGCAAAGATCGTC
AACGACAACATGATGTACGCCAAGATTGTGGTGAGGATGGGGGTCCGGAC
GGAGTGCAAGAACTGCGACTTCAGCGACATCTTGGAGGACGAGGATATGG
AGAAGGACTTGAAGGAGGCCGCCGAAGTTAGCATGGGCACGGAGATCACC
ATCATTGACATCGTCAGCATCAAATCCTTGGCAGACCAGGTGGTAGCATT
GTCCCAGTACCGGTTGCAGCTCTCGGATTACCTTCGCAGCCGCATGCAGG
CCATCGCGCCGAACTTGACCATCATGGTGGGCGAGCTCGTCGGCGCCAGG
CTCATCGCGCACGCGGGTTCGTTGATCAACCTCGCCAAGCAGCCCGCGTC
AACGGTGCAGATCCTCGGCGCTGAGAAGGCGCTCTTCCGCGCGCTTAAGA
CAAAGCACGATACTCCCAAGTACGGGCTGATCTACCACGCGAGCCTGATC
GGGCAGGCCGCGCCGAAGAACAAGGGTAAGATATCCCGCGTACTGGCCGC
CAAGTGCTCTCTGGCGATCCGCGTGGACGCTCTAGCCGACGAGACGGACA
CGAACATCGGGATGGATAGCCGCGCGAAGGTGGAAATGCGACTTCGGCAA
CTCGAGGGAGGAGCGCGCTTGTTGGAGGCAGCACCAAAGACACCGACGCA
GGTGAAGAAGTACGACTCGAAGGCGGCGGTGGCAGGAACACCAAAGACCT
ACAGCACTGGAGAGGACATGGTGGATGTTAAGGAGGAAGGTTCCGAGAAA
AAGAAGAAGAAAAAAGACAAGAGCGCTAAGAAGGCCAAGAAGAACAAGTC
TGCCAACGGAGATGCCGCCGAGGCTACCAACGGGGACGCCGCGGTTAAGG
AGGAGGAAAGCACAGAAACCCCCAAGAAAAAGAAAAAGCGGAAATCCGTC
GGAGCAGATGTTGGGGAGCTGGTAGGGGAGGAGGCGACGAATGGCGCGGC
GGCGGAGGCGGCACCGTCCTCGAAGAAAAAGAAGAAAAGAAGAAGAAAGA
ACAGGAGGCATAGAGGCAAGGTAAAACCGGTCGTCGTTGTTCGGCATGTG
TGTCGTGTCCCAAATATTTTGTACCTACTGAAGTCGTGGATGATTTCCCC
GAGAGTGAGTGACAGAAAAAGAGAGCGAGCGAGATTGTTGGCTCTTTTTC
CCTCTGTGTGTTCCAGTGTTTGTGGTTTAGCAATACGATACGTACTCGTT
TACGAGGGTTTCCAGGGTGTCTTGACTGCGTGCGCCACGGTTCTGTCCGT
GGTACGTACTTCACGTGTGTCACGTTTCATGGTGTGCGTGCTGTTTTCGT
AA
back to top