mRNA_P-littoralis_Contig100.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.5.1
Unique NamemRNA_P-littoralis_Contig100.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:15195..16169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789338.812043-CDS-P-littoralis_Contig100:15194..152661680789338.812043-CDS-P-littoralis_Contig100:15194..15266Pylaiella littoralis U1_48CDSP-littoralis_Contig100 15195..15266 -
1680789338.8249028-CDS-P-littoralis_Contig100:16025..161691680789338.8249028-CDS-P-littoralis_Contig100:16025..16169Pylaiella littoralis U1_48CDSP-littoralis_Contig100 16026..16169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.5.1prot_P-littoralis_Contig100.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 15195..16169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.5.1

>prot_P-littoralis_Contig100.5.1 ID=prot_P-littoralis_Contig100.5.1|Name=mRNA_P-littoralis_Contig100.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
ECQLTKATATKFGRDRGIAKVKEPWAKRALSYMWGLREATVELEASRELK
NTARAEAKSNQPLLASNEEESG
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mRNA from alignment at P-littoralis_Contig100:15195..16169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.5.1 ID=mRNA_P-littoralis_Contig100.5.1|Name=mRNA_P-littoralis_Contig100.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig100:15195..16169- (Pylaiella littoralis U1_48)
GAGTGCCAACTCACCAAGGCAACAGCCACGAAATTTGGACGAGACAGGGG
AATAGCAAAGGTTAAGGAGCCTTGGGCAAAACGAGCGCTGTCTTACATGT
GGGGCCTGCGCGAAGCAACGGTGGAGTTGGAGGCAAGCCGCGAGGTGAGA
AGCGTAGTCTTTTTTTGGCTGGGAGAACCTCTTTACCCCAATAATTCAGT
GCCGGTATAGCCCCGAGTCTACCAGGACTCTGCGGGAGCATCTCTCTTTT
TTTTTCGTCTTCTCCGCCTCTGATCTCCACCTCTGAGTTATCCCAAGATA
CATATATATTTTTTAACTAGTCGTATATCGATACTGTTTGTATCGATTTA
TTTAGTGGAACAGCCTTTGATCAACATGAAATCCGGACGACCTTCGTACT
CTCGACGACAAACATAGTACGTGCGCTGTCAAATTGTTGTAGCAGGAGCT
CGCCAAACATCGAGAGATATGCCTGCCCTTGCCAATTGCTCAGTAGAACG
CGTTTGGAGCTTGCCAAAAACAAAACATCAGAAACACCACATGAATTTGC
GGAAAATGCGCGACCAGACGGAGAGATCCGACAGAAACATTGAAACAGAT
CATCGGAAGCGAAAGGACAAACGAAATCCAGAAGTGGTAGCCGTCTACGT
ACAACGCCTCAACATCCTGTTTACAACGCTAGAGACCACTAAATCTCCAT
GGACAGGCATCTTGTTTATTTGTCCTGGTGCTTCAGAAAGTGGCAGGTGG
AAACGTGTGCGATACTCCATCAGTATGCCTTGTTTTACGAGAGTCCCGAC
GTTTTTCATCCCCAGATCCGCACCGCAGTGAATCTCGTGATTGGTGCTCA
CTGAACCTGCCCTTTGCTTTTTTCCCTCTCAACGCGTGTATTGCCTGTAT
CAGTTAAAAAATACTGCAAGGGCTGAAGCTAAAAGCAATCAACCACTCCT
GGCAAGCAATGAGGAAGAGAGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:15195..16169-

>mRNA_P-littoralis_Contig100.5.1 ID=mRNA_P-littoralis_Contig100.5.1|Name=mRNA_P-littoralis_Contig100.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig100:15195..16169- (Pylaiella littoralis U1_48)
GAGTGCCAACTCACCAAGGCAACAGCCACGAAATTTGGACGAGACAGGGG
AATAGCAAAGGTTAAGGAGCCTTGGGCAAAACGAGCGCTGTCTTACATGT
GGGGCCTGCGCGAAGCAACGGTGGAGTTGGAGGCAAGCCGCGAGTTAAAA
AATACTGCAAGGGCTGAAGCTAAAAGCAATCAACCACTCCTGGCAAGCAA
TGAGGAAGAGAGCGGT
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