mRNA_P-littoralis_Contig127.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.43.1
Unique NamemRNA_P-littoralis_Contig127.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: D8LJU6_ECTSI (Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.700e-38
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VDTD SGGISF+EFVAMMQLGEVETDFTKEINEAF FFDKDGDG+V+P+ELAEIMRGLGDKLSDDEI LLVKVA       IS+D+
Sbjct:   62 VDTDQSGGISFDEFVAMMQLGEVETDFTKEINEAFKFFDKDGDGEVTPAELAEIMRGLGDKLSDDEIELLVKVAXXXXXXVISIDE 147
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: A0A6H5JMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.960e-35
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VDTDG+GGISFEEFVAMMQLGEVETDF KEINEAF FFDKDGDG+V+ +ELAEIMRGLGD L+DDEI+LLVKV        IS+D+
Sbjct:  125 VDTDGNGGISFEEFVAMMQLGEVETDFKKEINEAFKFFDKDGDGEVTRAELAEIMRGLGDTLTDDEIDLLVKVXXXXXXXVISIDE 210
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: D7G0X3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0X3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.000e-24
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISV 252
            VD DG+G ISFEEFV +M++G +ETD+ KEIN AF+FFDK+GDG+V   ELAEI R LGD L+D EI LL+  A  D D  IS+
Sbjct:   66 VDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIARALGDSLTDAEIYLLINAAHKDRDATISM 149
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: A0A6H5JMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.780e-24
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VD DG+G I+F EFV MM+  +V+TDF ++I EAF FFD+DG G +   EL  IMR LG KL+D EINLLV+ AD DGDG++ +++
Sbjct:   36 VDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 121
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: D8LH46_ECTSI (Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH46_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-23
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VD DG+G I+F EFV MM+  +V+TDF ++I EAF FFD+DG G +   EL  IMR LG KL+D EINLLV+ AD DGDG++ +++
Sbjct:   63 VDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 148
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: A0A835YUT0_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.670e-20
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVK 216
            VD DG+G ISF+EFV MM+  EVETDF +EI EAF  FDKDG G +   EL  IM+GLG  LSD EI LLV+
Sbjct:   63 VDIDGNGSISFDEFVIMMRKCEVETDFDREITEAFKVFDKDGSGSIDKEELTAIMKGLGANLSDQEIELLVR 134
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: A0A835YVF8_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.850e-20
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   28 SFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISV 252
            +F EFV MM+  E+ TDF  EI  AF FFDKDGDG ++  ELA +MRGLG  LSD EI LLVK AD +GDG IS+
Sbjct:   68 TFNEFVEMMRRCELSTDFEMEIKGAFEFFDKDGDGDITSEELASVMRGLGANLSDQEIALLVKEADKNGDGAISL 142
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: A0A7K4SFU7_COLPI (CALMS protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4SFU7_COLPI)

HSP 1 Score: 84.3 bits (207), Expect = 4.470e-19
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VDTDGSG I F EF+++M     +TD  +EI EAF  FDKDG+G +S +EL  +M  LG+KL+D+E++ +++ ADS+ DG+++ ++
Sbjct:   36 VDTDGSGTIDFPEFLSLMARKMRDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADSNNDGQVNYEE 121
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: B0D6G1_LACBS (Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6G1_LACBS)

HSP 1 Score: 84.3 bits (207), Expect = 7.240e-19
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEI 246
            VD DG+G I FEEF+ MM    V+ +  +E+ +AF  FDKDG G++S SEL ++MR LG+ L+D E+  +++ AD DGDGEI
Sbjct:   55 VDKDGNGTIDFEEFLDMMSRNAVDENAEEEMRQAFLVFDKDGSGQISKSELKQVMRSLGEYLTDQEVEEMIREADGDGDGEI 136
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BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Match: R7QJB2_CHOCR (Calmodulin n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QJB2_CHOCR)

HSP 1 Score: 84.3 bits (207), Expect = 7.610e-19
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSELAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK 258
            VD DG+G I F EFV +M      TD   EI EAFN FDKDG GK+S  EL +IM+ LG+ L+++EI  +++ AD++GDGEI  ++
Sbjct:   59 VDADGNGLIDFAEFVTLMARKMNNTDKDAEIREAFNVFDKDGSGKISGDELRQIMKSLGEDLTEEEIQQMIREADTNGDGEIDYEE 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJU6_ECTSI1.700e-3881.40Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JMF0_9PHAE8.960e-3576.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0X3_ECTSI2.000e-2460.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMU5_9PHAE8.780e-2455.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH46_ECTSI1.270e-2355.81Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835YUT0_9STRA2.670e-2062.50Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A835YVF8_9STRA4.850e-2061.33Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A7K4SFU7_COLPI4.470e-1946.51CALMS protein (Fragment) n=1 Tax=Columbina picui T... [more]
B0D6G1_LACBS7.240e-1950.00Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6... [more]
R7QJB2_CHOCR7.610e-1950.00Calmodulin n=3 Tax=Rhodymeniophycidae TaxID=204526... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:175687..176401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJU6
PFAMsEF-hand_1,EF-hand_5,EF-hand_7
Model size263
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.79e-39
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
DescriptionCalcium-binding protein
Cds size261
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789562.326283-CDS-P-littoralis_Contig127:175686..1758121680789562.326283-CDS-P-littoralis_Contig127:175686..175812Pylaiella littoralis U1_48CDSP-littoralis_Contig127 175687..175812 -
1680789562.3382318-CDS-P-littoralis_Contig127:176266..1764011680789562.3382318-CDS-P-littoralis_Contig127:176266..176401Pylaiella littoralis U1_48CDSP-littoralis_Contig127 176267..176401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.43.1prot_P-littoralis_Contig127.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 175687..176401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.43.1

>prot_P-littoralis_Contig127.43.1 ID=prot_P-littoralis_Contig127.43.1|Name=mRNA_P-littoralis_Contig127.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
VDTDGSGGISFEEFVAMMQLGEVETDFTKEINEAFNFFDKDGDGKVSPSE
LAEIMRGLGDKLSDDEINLLVKVADSDGDGEISVDK*
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mRNA from alignment at P-littoralis_Contig127:175687..176401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.43.1 ID=mRNA_P-littoralis_Contig127.43.1|Name=mRNA_P-littoralis_Contig127.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=715bp|location=Sequence derived from alignment at P-littoralis_Contig127:175687..176401- (Pylaiella littoralis U1_48)
GTTGACACCGATGGGAGTGGGGGCATTTCCTTCGAGGAGTTTGTGGCGAT
GATGCAGCTAGGGGAGGTGGAGACTGACTTCACCAAAGAGATCAACGAAG
CTTTCAATTTTTTCGACAAGGACGGCGATGGAAAGGTGCGTGATACTGCC
TTGAGATGGCACGATTGGGGCATCTACCGGCAATGCGATCGAAGCAGCGC
GTGCGTGACTACCGTGCGTCAGTGGGATTCACACACAGCTAAAGTGCCTC
CCAGCACGGGAACGCGGGTGTGTTGTTGTGATTGTAGCTGGTCATGAGCC
CGTCAGAGGCCGCAGAGGTAGACTCTCTGTCACTACTACTGTATGCGTAA
TTTCCGAACGTACGCAAGAAATATTTTGGAACTCCGCCTGTAGTAACACT
TGTTGGAGACTGGAACAGAAAGACGTCCTTTGACTTTCTGTTTTTGGTGT
ATCATACGTGCATCTGGCGTGTTGGTGTATTTTTTGGTGTCGAGACTCAT
GTTTTCGTACAAAAAATGAGTCTAGTCTTCCGCGGCATGTGTAGATCTGG
CGTGTTTGATGATTTTTGATTTATTTATCTTGTCTGCAGGTATCGCCGTC
GGAGCTGGCGGAGATTATGCGAGGCCTGGGCGACAAGCTATCCGACGACG
AGATCAACCTGCTCGTCAAGGTGGCAGATAGTGATGGAGATGGAGAGATC
AGCGTCGACAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:175687..176401-

>mRNA_P-littoralis_Contig127.43.1 ID=mRNA_P-littoralis_Contig127.43.1|Name=mRNA_P-littoralis_Contig127.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig127:175687..176401- (Pylaiella littoralis U1_48)
GTTGACACCGATGGGAGTGGGGGCATTTCCTTCGAGGAGTTTGTGGCGAT
GATGCAGCTAGGGGAGGTGGAGACTGACTTCACCAAAGAGATCAACGAAG
CTTTCAATTTTTTCGACAAGGACGGCGATGGAAAGGTATCGCCGTCGGAG
CTGGCGGAGATTATGCGAGGCCTGGGCGACAAGCTATCCGACGACGAGAT
CAACCTGCTCGTCAAGGTGGCAGATAGTGATGGAGATGGAGAGATCAGCG
TCGACAAGTGA
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