mRNA_P-littoralis_Contig1265.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1265.6.1
Unique NamemRNA_P-littoralis_Contig1265.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.210e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  268 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.140e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  591 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.290e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct: 1039 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.250e-25
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            RVCDYS+ SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  398 RVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467
[Close]
BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.930e-12
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG 150
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  474 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A2I1GI64_9GLOM (Uncharacterized protein n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GI64_9GLOM)

HSP 1 Score: 58.9 bits (141), Expect = 2.350e-8
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            R+C Y+   L+KR+P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  529 RICSYNFADLMKRVPEVLVSVPITTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRLPENIENLM 598
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A2N1N172_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N172_9GLOM)

HSP 1 Score: 57.4 bits (137), Expect = 8.130e-8
Identity = 24/70 (34.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   22 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRVDAVL 231
            R+C Y+   L+K++P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  434 RICSYNFAELMKQVPEVLVSVPVTTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRIPENIEKLM 503
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A1Y2GP19_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GP19_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 5.750e-7
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   28 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHR 201
            CDY+ K L + +PA L+S+++  IRK+AR S+ Y++AY  GL G +     KK+  HR
Sbjct:  148 CDYTFKGLQETIPAALASVTILSIRKYARRSFRYMDAYRKGLSGRVAELQAKKYKSHR 205
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BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: U9TZ17_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TZ17_RHIID)

HSP 1 Score: 53.5 bits (127), Expect = 6.260e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   28 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRV 219
            CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  100 CDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 163
[Close]
BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Match: A0A015KJQ5_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015KJQ5_RHIIW)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   28 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQHRDLKKWTCHRSSTDRV 219
            CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  165 CDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1265.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE2.210e-2671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE8.140e-2671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE8.290e-2671.43Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE1.250e-2570.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE6.930e-1272.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I1GI64_9GLOM2.350e-835.71Uncharacterized protein n=11 Tax=Rhizophagus TaxID... [more]
A0A2N1N172_9GLOM8.130e-834.29Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A1Y2GP19_9FUNG5.750e-743.10Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
U9TZ17_RHIID6.260e-742.19Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A015KJQ5_RHIIW1.250e-642.19Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1265contigP-littoralis_Contig1265:12602..12832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog588596.U9UEZ3
Model size231
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.73e-07
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.3499293-CDS-P-littoralis_Contig1265:12601..128321680789559.3499293-CDS-P-littoralis_Contig1265:12601..12832Pylaiella littoralis U1_48CDSP-littoralis_Contig1265 12602..12832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1265.6.1prot_P-littoralis_Contig1265.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1265 12602..12832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1265.6.1

>prot_P-littoralis_Contig1265.6.1 ID=prot_P-littoralis_Contig1265.6.1|Name=mRNA_P-littoralis_Contig1265.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MKAAQLGRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG
LDGYMQHRDLKKWTCHRSSTDRVDAVL
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mRNA from alignment at P-littoralis_Contig1265:12602..12832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1265.6.1 ID=mRNA_P-littoralis_Contig1265.6.1|Name=mRNA_P-littoralis_Contig1265.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1265:12602..12832+ (Pylaiella littoralis U1_48)
ATGAAAGCTGCGCAATTGGGCCGGGTGTGCGATTATTCCATCAAGAGTCT
TCTAAAACGACTCCCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTC
GCAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAGGCGTATGCCACGGGG
CTCGACGGTTACATGCAACACAGAGACCTAAAGAAGTGGACGTGCCACCG
CTCATCTACTGATCGGGTCGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1265:12602..12832+

>mRNA_P-littoralis_Contig1265.6.1 ID=mRNA_P-littoralis_Contig1265.6.1|Name=mRNA_P-littoralis_Contig1265.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1265:12602..12832+ (Pylaiella littoralis U1_48)
ATGAAAGCTGCGCAATTGGGCCGGGTGTGCGATTATTCCATCAAGAGTCT
TCTAAAACGACTCCCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTC
GCAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAGGCGTATGCCACGGGG
CTCGACGGTTACATGCAACACAGAGACCTAAAGAAGTGGACGTGCCACCG
CTCATCTACTGATCGGGTCGATGCCGTGTTG
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