mRNA_P-littoralis_Contig1260.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1260.15.1
Unique NamemRNA_P-littoralis_Contig1260.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1260.15.1 vs. uniprot
Match: A0A6H5JQ24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ24_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.560e-25
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  205 QVQALRLNENPMVDASLAFFQDAMKNGMSEKQVTLQLQTVAVIYACQGVKRNGGKTDKVKREQAACVAFRDFAVPGFLKWLATVAEPPVELPSWLTR 495
            Q +AL LN NP+  A++A F D ++ GM++KQ+ LQLQ+V   YACQGVKRN G T+K  +++AA  A++   VPGFL WL  +   PV+LP WLT 
Sbjct:    9 QPEALLLNYNPLAKAAVAHFGDCIEGGMTKKQIMLQLQSVCATYACQGVKRNAGLTNKKSKQKAATHAYKTIVVPGFLAWLRELEGSPVQLPRWLTE 105
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BLAST of mRNA_P-littoralis_Contig1260.15.1 vs. uniprot
Match: A0A6H5JHB3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.130e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:  205 QVQALRLNENPMVDASLAFFQDAMKNGMSEKQVTLQLQTVAVIYACQGVKRNGGKTDKVKREQAACVAFRDFAVPGFL 438
            Q +AL LN NP+  A++A F D ++ GM++KQ+ LQLQ+V   YACQGVKRN G T+K  +++AA  A++   VPGFL
Sbjct:    9 QPEALLLNYNPLAKAAVAHFGDCIEGGMTKKQIMLQLQSVCATYACQGVKRNAGLTNKKSKQKAATHAYKTIVVPGFL 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1260.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ24_9PHAE1.560e-2550.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHB3_9PHAE2.130e-1851.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1260contigP-littoralis_Contig1260:39769..40264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size496
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.4950678-CDS-P-littoralis_Contig1260:39768..402631680789558.4950678-CDS-P-littoralis_Contig1260:39768..40263Pylaiella littoralis U1_48CDSP-littoralis_Contig1260 39769..40263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1260.15.1prot_P-littoralis_Contig1260.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1260 39769..40263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1260.15.1

>prot_P-littoralis_Contig1260.15.1 ID=prot_P-littoralis_Contig1260.15.1|Name=mRNA_P-littoralis_Contig1260.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
GWVCANIEGVCRGTVSIFENERAGAGVLACWPRSHRRCSRGTSHAPQTQQ
TVSREGQPPTDSFASTMSQVQALRLNENPMVDASLAFFQDAMKNGMSEKQ
VTLQLQTVAVIYACQGVKRNGGKTDKVKREQAACVAFRDFAVPGFLKWLA
TVAEPPVELPSWLTR
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mRNA from alignment at P-littoralis_Contig1260:39769..40264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1260.15.1 ID=mRNA_P-littoralis_Contig1260.15.1|Name=mRNA_P-littoralis_Contig1260.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=496bp|location=Sequence derived from alignment at P-littoralis_Contig1260:39769..40264+ (Pylaiella littoralis U1_48)
GGCTGGGTTTGTGCAAATATCGAAGGCGTGTGCCGAGGGACTGTCAGCAT
TTTTGAAAATGAGCGCGCGGGTGCTGGGGTGCTGGCGTGCTGGCCCCGGT
CGCACCGACGCTGTTCACGAGGCACATCGCACGCTCCACAGACACAGCAG
ACCGTCAGCAGGGAAGGGCAGCCACCCACAGATAGCTTCGCATCAACCAT
GTCCCAAGTTCAAGCGCTGAGGCTGAACGAAAACCCGATGGTGGATGCAA
GCCTTGCTTTCTTTCAGGACGCGATGAAAAATGGGATGAGCGAAAAGCAA
GTAACGCTGCAGCTGCAGACAGTCGCAGTCATCTACGCGTGCCAGGGGGT
CAAGCGGAACGGCGGGAAGACAGACAAAGTAAAGAGAGAGCAGGCTGCGT
GTGTCGCTTTCAGAGATTTCGCTGTTCCTGGCTTCTTGAAGTGGTTGGCG
ACGGTAGCGGAGCCTCCGGTCGAGCTGCCATCTTGGCTGACCAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1260:39769..40264+

>mRNA_P-littoralis_Contig1260.15.1 ID=mRNA_P-littoralis_Contig1260.15.1|Name=mRNA_P-littoralis_Contig1260.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig1260:39769..40264+ (Pylaiella littoralis U1_48)
GGCTGGGTTTGTGCAAATATCGAAGGCGTGTGCCGAGGGACTGTCAGCAT
TTTTGAAAATGAGCGCGCGGGTGCTGGGGTGCTGGCGTGCTGGCCCCGGT
CGCACCGACGCTGTTCACGAGGCACATCGCACGCTCCACAGACACAGCAG
ACCGTCAGCAGGGAAGGGCAGCCACCCACAGATAGCTTCGCATCAACCAT
GTCCCAAGTTCAAGCGCTGAGGCTGAACGAAAACCCGATGGTGGATGCAA
GCCTTGCTTTCTTTCAGGACGCGATGAAAAATGGGATGAGCGAAAAGCAA
GTAACGCTGCAGCTGCAGACAGTCGCAGTCATCTACGCGTGCCAGGGGGT
CAAGCGGAACGGCGGGAAGACAGACAAAGTAAAGAGAGAGCAGGCTGCGT
GTGTCGCTTTCAGAGATTTCGCTGTTCCTGGCTTCTTGAAGTGGTTGGCG
ACGGTAGCGGAGCCTCCGGTCGAGCTGCCATCTTGGCTGACCAGG
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