mRNA_P-littoralis_Contig126.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.77.1
Unique NamemRNA_P-littoralis_Contig126.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:312273..313494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size711
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_003480.1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789556.3473275-CDS-P-littoralis_Contig126:312272..3125501680789556.3473275-CDS-P-littoralis_Contig126:312272..312550Pylaiella littoralis U1_48CDSP-littoralis_Contig126 312273..312550 -
1680789556.3575563-CDS-P-littoralis_Contig126:312784..3130011680789556.3575563-CDS-P-littoralis_Contig126:312784..313001Pylaiella littoralis U1_48CDSP-littoralis_Contig126 312785..313001 -
1680789556.3664896-CDS-P-littoralis_Contig126:313278..3134941680789556.3664896-CDS-P-littoralis_Contig126:313278..313494Pylaiella littoralis U1_48CDSP-littoralis_Contig126 313279..313494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.77.1prot_P-littoralis_Contig126.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 312273..313494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.77.1

>prot_P-littoralis_Contig126.77.1 ID=prot_P-littoralis_Contig126.77.1|Name=mRNA_P-littoralis_Contig126.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=237bp
MDVVRENSRSGGGGGEGHALATTTTTTRRGAGGGLREELTATTTGLDFVR
LMEAVLSTLRGGGAGCDETSCAALRLLLVLSTADDSQKAALRTPRVLHAA
LAFFTPDTMGSRTSSRMSSRMSSNMSSSIMSSSSSSSSSSGSGSAAMVST
ASMTAIRASPRSVAADVTARLLLTELLPPHFGETNGNIAAALEAPPSAFA
GAPAVVATAAGAAQAQRRTGGTGGRRRVGHAPTASGA
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mRNA from alignment at P-littoralis_Contig126:312273..313494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.77.1 ID=mRNA_P-littoralis_Contig126.77.1|Name=mRNA_P-littoralis_Contig126.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-littoralis_Contig126:312273..313494- (Pylaiella littoralis U1_48)
ATGGACGTCGTGCGCGAAAACAGCAGGAGCGGCGGCGGCGGCGGTGAGGG
GCATGCTCTCGCAACCACGACGACGACGACGAGGCGAGGGGCCGGCGGTG
GTCTGAGGGAGGAACTCACCGCAACAACAACGGGGCTGGATTTTGTGAGA
TTGATGGAGGCCGTCTTGAGCACGCTGAGGGGTGGGGGCGCCGGCTGCGA
TGAGACCAGCTGCGCGGTGAGAACATTTCGCGGCCGTTTCTTGACAGTTC
TCTACTCGCAGCCGCAAGTGCTCTTTCGTCCCGCGCATGGCAGACGGCGG
CAAAACAGCACACAGACCCCAACATTGATACCCGTATTCTTGACGTTACG
TCTCTCACTTGGTTGGCCCCTTTCGATTCACCGCCCCGCCCCCCCCCCCC
TGCCCGCGTCGGGCATCCCCGCCTATCCTCACCCAACTGTACGACCCCCC
GCCCCCCCCCTTTCGTCCATCATACTGCTGCCACACCGACCAGGCGTTGC
GCTTGCTGCTCGTCCTGTCCACGGCGGACGATTCGCAGAAAGCGGCCCTG
CGCACCCCGCGCGTGCTTCACGCCGCTCTGGCCTTCTTCACGCCGGACAC
CATGGGCAGCCGCACGAGCAGCCGCATGAGCAGCCGCATGAGCAGCAACA
TGAGCAGCAGCATCATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGT
AGCGGTAGCGGTAGCGGTGCCAATAGCGTTGGCAACGGCAGAAAAAGTAG
AGCCAGCGTCGACAATGGCCAGCCCGTTGAGCCACCGTCGGCGGCCGTGG
CACAAGACCCACACCTGCACCTGCAGCACCAGGCACAAGTGGAGACGAAG
ACGCACACGCCGAACCCTCTGTCTAGTGTCATCTCAAGAAGAAGGGGCCT
CGACTACGAAGCACCAGCAAGCGAGTCGTCGACAACAACTGGAGCGGCGA
TGGTGTCGACAGCATCAATGACGGCGATAAGAGCATCGCCGCGGTCGGTT
GCAGCAGACGTCACGGCGCGGCTTCTTCTGACGGAGCTACTGCCGCCACA
CTTCGGCGAAACCAATGGCAACATTGCGGCGGCACTCGAGGCACCGCCAT
CCGCATTTGCGGGGGCGCCGGCAGTGGTGGCGACAGCAGCTGGTGCCGCG
CAAGCTCAGAGGCGGACGGGAGGAACGGGGGGGCGGCGGCGGGTTGGGCA
TGCACCTACCGCGTCCGGGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:312273..313494-

>mRNA_P-littoralis_Contig126.77.1 ID=mRNA_P-littoralis_Contig126.77.1|Name=mRNA_P-littoralis_Contig126.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=711bp|location=Sequence derived from alignment at P-littoralis_Contig126:312273..313494- (Pylaiella littoralis U1_48)
ATGGACGTCGTGCGCGAAAACAGCAGGAGCGGCGGCGGCGGCGGTGAGGG
GCATGCTCTCGCAACCACGACGACGACGACGAGGCGAGGGGCCGGCGGTG
GTCTGAGGGAGGAACTCACCGCAACAACAACGGGGCTGGATTTTGTGAGA
TTGATGGAGGCCGTCTTGAGCACGCTGAGGGGTGGGGGCGCCGGCTGCGA
TGAGACCAGCTGCGCGGCGTTGCGCTTGCTGCTCGTCCTGTCCACGGCGG
ACGATTCGCAGAAAGCGGCCCTGCGCACCCCGCGCGTGCTTCACGCCGCT
CTGGCCTTCTTCACGCCGGACACCATGGGCAGCCGCACGAGCAGCCGCAT
GAGCAGCCGCATGAGCAGCAACATGAGCAGCAGCATCATGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGGTAGCGGTAGCGCGGCGATGGTGTCGACA
GCATCAATGACGGCGATAAGAGCATCGCCGCGGTCGGTTGCAGCAGACGT
CACGGCGCGGCTTCTTCTGACGGAGCTACTGCCGCCACACTTCGGCGAAA
CCAATGGCAACATTGCGGCGGCACTCGAGGCACCGCCATCCGCATTTGCG
GGGGCGCCGGCAGTGGTGGCGACAGCAGCTGGTGCCGCGCAAGCTCAGAG
GCGGACGGGAGGAACGGGGGGGCGGCGGCGGGTTGGGCATGCACCTACCG
CGTCCGGGGCT
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