mRNA_P-littoralis_Contig1258.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1258.3.1
Unique NamemRNA_P-littoralis_Contig1258.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1258.3.1 vs. uniprot
Match: A0A6H5JVL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL5_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.080e-5
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  247 GEGAEYLSPFTRVVGGDVTLDRQRHTT 327
            GE A+YLSPFTR VGGD+T+DR RHTT
Sbjct:  114 GEAADYLSPFTRSVGGDLTMDRHRHTT 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1258.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVL5_9PHAE8.080e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1258contigP-littoralis_Contig1258:3101..3430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size332
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.255549-CDS-P-littoralis_Contig1258:3100..34301680789553.255549-CDS-P-littoralis_Contig1258:3100..3430Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 3101..3430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1258.3.1prot_P-littoralis_Contig1258.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1258 3101..3430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1258.3.1

>prot_P-littoralis_Contig1258.3.1 ID=prot_P-littoralis_Contig1258.3.1|Name=mRNA_P-littoralis_Contig1258.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
AKGLKQKHLAGRSSVNILAAVAEVAENKGNGNNVDRENVSHKFCEIGHTG
EDRIHVLSETITQQPDSHDCLVFPPSPLVLKPGEGAEYLSPFTRVVGGDV
TLDRQRHTTA
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mRNA from alignment at P-littoralis_Contig1258:3101..3430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1258.3.1 ID=mRNA_P-littoralis_Contig1258.3.1|Name=mRNA_P-littoralis_Contig1258.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1258:3101..3430+ (Pylaiella littoralis U1_48)
GCTAAGGGGCTGAAACAGAAACATTTGGCTGGCCGATCCTCGGTAAATAT
TTTGGCTGCAGTAGCGGAAGTGGCTGAAAATAAAGGTAATGGAAATAATG
TAGATCGGGAAAACGTTTCGCATAAATTTTGTGAAATTGGGCACACAGGA
GAGGATCGTATACATGTATTATCAGAAACGATCACTCAGCAGCCTGACTC
TCATGATTGTTTGGTGTTTCCTCCGTCGCCATTGGTGCTAAAACCAGGTG
AAGGAGCAGAATACTTGTCGCCGTTTACTCGAGTGGTGGGGGGTGATGTC
ACGTTGGACCGGCAACGACACACGACAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1258:3101..3430+

>mRNA_P-littoralis_Contig1258.3.1 ID=mRNA_P-littoralis_Contig1258.3.1|Name=mRNA_P-littoralis_Contig1258.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1258:3101..3430+ (Pylaiella littoralis U1_48)
GCTAAGGGGCTGAAACAGAAACATTTGGCTGGCCGATCCTCGGTAAATAT
TTTGGCTGCAGTAGCGGAAGTGGCTGAAAATAAAGGTAATGGAAATAATG
TAGATCGGGAAAACGTTTCGCATAAATTTTGTGAAATTGGGCACACAGGA
GAGGATCGTATACATGTATTATCAGAAACGATCACTCAGCAGCCTGACTC
TCATGATTGTTTGGTGTTTCCTCCGTCGCCATTGGTGCTAAAACCAGGTG
AAGGAGCAGAATACTTGTCGCCGTTTACTCGAGTGGTGGGGGGTGATGTC
ACGTTGGACCGGCAACGACACACGACAGCA
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