mRNA_P-littoralis_Contig1251.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1251.5.1
Unique NamemRNA_P-littoralis_Contig1251.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1251.5.1 vs. uniprot
Match: A0A6H5JGE4_9PHAE (Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGE4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.870e-32
Identity = 123/323 (38.08%), Postives = 152/323 (47.06%), Query Frame = 3 
Query:  183 ISHGSLAGA-PLPTLARSPLGARVVQGPLQRHQQXXXXRSLSAMDLEHLPPISLGRGDSGSGSSGLLPPPLRV--SPAPPGLGGANGSGGESDWLAVQQAFGSPASALHMPPSVVVPTSPTDGQSTAAEVLGTADLDSPLQRRARRSPSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMEQRPVGSCDSDDGGSSRESKQQI--------------------------EGHAGA--GNDERDG-----SLTEELLKMQKQIEAMLERHSKSLEGKIGETEQVISARLALLETKVHGLEVSSPL 1043
            +SHG ++G  PLP   RSPLG R  QGP      XXXX         H+P I LG     +   G+LP P RV  SP  P  G        SDWLAVQQAFGSP+SALHMPP+VVVPTSP D  ++     G    D+P+ +   R  S S                                              +    PVGS   ++G + ++                               +G   A  G D+  G     SL EEL KM++QIEAMLERHSK+LEG++GETEQ+ISARLA+LETKVHGLE+ SPL
Sbjct:  415 VSHGGMSGVVPLPEQGRSPLGPRSAQGPPHEXXXXXXXXXXXXXXXXHVPAIDLGD----AAPMGMLPTPARVGSSPGSP-AGXXXXXXXXSDWLAVQQAFGSPSSALHMPPAVVVPTSPPDAPASGR---GVVVADTPMPKLPPRPSSASSIGEAAAVSAVVDAGTAKVDSGSSSSS-------------------SRVMSPVGSGRDEEGRADKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGGTSAAFGKDKDSGEDDDRSLAEELGKMRQQIEAMLERHSKTLEGRMGETEQMISARLAMLETKVHGLEIGSPL 710
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1251.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGE4_9PHAE1.870e-3238.08Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1251contigP-littoralis_Contig1251:20345..21466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1122
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_007220.2
Cds size957
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.6086814-UTR-P-littoralis_Contig1251:20344..204391680789551.6086814-UTR-P-littoralis_Contig1251:20344..20439Pylaiella littoralis U1_48UTRP-littoralis_Contig1251 20345..20439 +
1680789551.6287072-UTR-P-littoralis_Contig1251:21396..214661680789551.6287072-UTR-P-littoralis_Contig1251:21396..21466Pylaiella littoralis U1_48UTRP-littoralis_Contig1251 21397..21466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.6179185-CDS-P-littoralis_Contig1251:20439..213961680789551.6179185-CDS-P-littoralis_Contig1251:20439..21396Pylaiella littoralis U1_48CDSP-littoralis_Contig1251 20440..21396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1251.5.1prot_P-littoralis_Contig1251.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1251 20440..21396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1251.5.1

>prot_P-littoralis_Contig1251.5.1 ID=prot_P-littoralis_Contig1251.5.1|Name=mRNA_P-littoralis_Contig1251.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=319bp
MGGADSLVWAQGHGRSASVGSSSAYSADLISHGSLAGAPLPTLARSPLGA
RVVQGPLQRHQQHQQHRSLSAMDLEHLPPISLGRGDSGSGSSGLLPPPLR
VSPAPPGLGGANGSGGESDWLAVQQAFGSPASALHMPPSVVVPTSPTDGQ
STAAEVLGTADLDSPLQRRARRSPSTSSLVLAASAAAFAGGAGGNGLDSS
SSSSSVDSVAVGGGLEGGGGRGGNMEQRPVGSCDSDDGGSSRESKQQIEG
HAGAGNDERDGSLTEELLKMQKQIEAMLERHSKSLEGKIGETEQVISARL
ALLETKVHGLEVSSPLQA*
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mRNA from alignment at P-littoralis_Contig1251:20345..21466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1251.5.1 ID=mRNA_P-littoralis_Contig1251.5.1|Name=mRNA_P-littoralis_Contig1251.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1122bp|location=Sequence derived from alignment at P-littoralis_Contig1251:20345..21466+ (Pylaiella littoralis U1_48)
CTGTTCGCGCCCCCGCTACGCTCCACCATGACTGGCTCGCCGACAGCGAT
ATCAACGCCCAGACGGGTGGTATCGGCGGCAGGTACAGCGGGAGCATGGG
CGGGGCTGACTCCCTGGTGTGGGCGCAGGGTCACGGAAGGAGCGCCAGCG
TCGGCAGCAGCAGCGCCTACAGCGCTGACCTCATCTCCCACGGAAGTCTC
GCCGGAGCTCCGCTGCCCACGCTAGCGCGGTCTCCGCTTGGAGCGCGCGT
CGTGCAGGGCCCGTTGCAGCGGCATCAGCAGCATCAGCAGCATCGATCCT
TGTCGGCGATGGATTTGGAACATCTGCCGCCGATAAGTTTGGGTCGTGGC
GACAGCGGCAGCGGCAGCAGTGGCTTGCTCCCTCCTCCCTTACGGGTGAG
CCCCGCACCACCGGGTTTGGGGGGTGCGAACGGCAGCGGAGGAGAATCGG
ACTGGCTCGCTGTCCAACAAGCGTTCGGATCGCCGGCTAGCGCTCTGCAC
ATGCCGCCGTCGGTCGTGGTGCCGACAAGCCCCACCGACGGGCAGTCGAC
GGCGGCCGAGGTGTTGGGAACGGCGGACTTGGATTCGCCCCTGCAGCGGC
GTGCCCGGCGTTCGCCCTCGACATCGTCCCTCGTTCTCGCTGCTTCGGCC
GCCGCGTTTGCGGGCGGTGCCGGCGGCAACGGCTTAGACAGCAGCAGCAG
CAGTAGCAGCGTCGACAGCGTGGCCGTTGGTGGCGGCCTCGAAGGAGGAG
GAGGAAGAGGAGGTAACATGGAGCAGCGGCCCGTTGGCAGTTGCGACAGT
GATGATGGTGGTAGCAGTCGTGAGTCCAAGCAGCAGATTGAAGGCCACGC
GGGTGCCGGAAACGATGAGCGTGACGGCTCCCTAACGGAGGAGCTGTTGA
AGATGCAGAAGCAGATTGAGGCGATGCTTGAGAGGCACTCCAAGTCGCTC
GAGGGAAAGATAGGCGAGACGGAGCAGGTGATATCCGCCCGGCTAGCCCT
GCTGGAGACCAAGGTCCACGGGCTCGAGGTCAGCTCGCCTCTACAGGCGT
GAACAACAATGGTTGTCGACACCATCTCCTCTCCTCTCTCTATCATTGGC
CGAGAGAGGGAGGCATGAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1251:20345..21466+

>mRNA_P-littoralis_Contig1251.5.1 ID=mRNA_P-littoralis_Contig1251.5.1|Name=mRNA_P-littoralis_Contig1251.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig1251:20345..21466+ (Pylaiella littoralis U1_48)
ATGGGCGGGGCTGACTCCCTGGTGTGGGCGCAGGGTCACGGAAGGAGCGC
CAGCGTCGGCAGCAGCAGCGCCTACAGCGCTGACCTCATCTCCCACGGAA
GTCTCGCCGGAGCTCCGCTGCCCACGCTAGCGCGGTCTCCGCTTGGAGCG
CGCGTCGTGCAGGGCCCGTTGCAGCGGCATCAGCAGCATCAGCAGCATCG
ATCCTTGTCGGCGATGGATTTGGAACATCTGCCGCCGATAAGTTTGGGTC
GTGGCGACAGCGGCAGCGGCAGCAGTGGCTTGCTCCCTCCTCCCTTACGG
GTGAGCCCCGCACCACCGGGTTTGGGGGGTGCGAACGGCAGCGGAGGAGA
ATCGGACTGGCTCGCTGTCCAACAAGCGTTCGGATCGCCGGCTAGCGCTC
TGCACATGCCGCCGTCGGTCGTGGTGCCGACAAGCCCCACCGACGGGCAG
TCGACGGCGGCCGAGGTGTTGGGAACGGCGGACTTGGATTCGCCCCTGCA
GCGGCGTGCCCGGCGTTCGCCCTCGACATCGTCCCTCGTTCTCGCTGCTT
CGGCCGCCGCGTTTGCGGGCGGTGCCGGCGGCAACGGCTTAGACAGCAGC
AGCAGCAGTAGCAGCGTCGACAGCGTGGCCGTTGGTGGCGGCCTCGAAGG
AGGAGGAGGAAGAGGAGGTAACATGGAGCAGCGGCCCGTTGGCAGTTGCG
ACAGTGATGATGGTGGTAGCAGTCGTGAGTCCAAGCAGCAGATTGAAGGC
CACGCGGGTGCCGGAAACGATGAGCGTGACGGCTCCCTAACGGAGGAGCT
GTTGAAGATGCAGAAGCAGATTGAGGCGATGCTTGAGAGGCACTCCAAGT
CGCTCGAGGGAAAGATAGGCGAGACGGAGCAGGTGATATCCGCCCGGCTA
GCCCTGCTGGAGACCAAGGTCCACGGGCTCGAGGTCAGCTCGCCTCTACA
GGCGTGA
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