mRNA_P-littoralis_Contig1251.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1251.7.1
Unique NamemRNA_P-littoralis_Contig1251.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1251.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1251contigP-littoralis_Contig1251:21488..22176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size689
Hectar predicted targeting categorysignal peptide
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.4058845-UTR-P-littoralis_Contig1251:21487..216871680789551.4058845-UTR-P-littoralis_Contig1251:21487..21687Pylaiella littoralis U1_48UTRP-littoralis_Contig1251 21488..21687 +
1680789551.429395-UTR-P-littoralis_Contig1251:22050..221761680789551.429395-UTR-P-littoralis_Contig1251:22050..22176Pylaiella littoralis U1_48UTRP-littoralis_Contig1251 22051..22176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.415961-CDS-P-littoralis_Contig1251:21687..220501680789551.415961-CDS-P-littoralis_Contig1251:21687..22050Pylaiella littoralis U1_48CDSP-littoralis_Contig1251 21688..22050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1251.7.1prot_P-littoralis_Contig1251.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1251 21688..22050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1251.7.1

>prot_P-littoralis_Contig1251.7.1 ID=prot_P-littoralis_Contig1251.7.1|Name=mRNA_P-littoralis_Contig1251.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MRVYSVPRVFCAGVRAARAHVLFLLFLLFLLLWPSLRACMLLRASYLVGL
RRFASKFFFFVRARCPQSATTRHMPRSALFYAGHQQKPRLGGTGYELGCG
RGCECGWVAGCGPKQIVFGA*
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mRNA from alignment at P-littoralis_Contig1251:21488..22176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1251.7.1 ID=mRNA_P-littoralis_Contig1251.7.1|Name=mRNA_P-littoralis_Contig1251.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=689bp|location=Sequence derived from alignment at P-littoralis_Contig1251:21488..22176+ (Pylaiella littoralis U1_48)
GGCAGGTAGAGGTGGCACGCTCTTTTCTGGTTGGTAAAAAAACTCTTCGG
TCGAACAGGCCGTTCCGGCCTAAAATCGTCAGATGGCGGCTGAAATCACT
CGCGGTCACTTGGGCAGATGGACATTTGGACGCGGCCGACGTCATCTGAT
GGTTCTTTTCGATTGTGTGACTTGAACGTATTCGCAAGGAGCGGGCGCGT
ATGCGTGTGTATTCAGTGCCGCGTGTGTTCTGTGCTGGCGTACGCGCGGC
ACGCGCGCACGTTTTGTTTTTGTTGTTTTTGTTGTTTTTGCTGTTGTGGC
CAAGCCTGCGGGCGTGTATGTTGTTGAGGGCTTCTTACCTTGTCGGTTTG
AGGCGCTTCGCGTCCAAGTTTTTTTTTTTTGTCAGAGCTCGATGTCCTCA
GTCGGCCACGACAAGACATATGCCCCGTTCAGCGTTATTTTATGCGGGGC
ATCAGCAAAAGCCCCGGTTGGGAGGGACCGGTTATGAATTGGGATGTGGG
CGTGGTTGCGAGTGTGGTTGGGTGGCCGGGTGTGGGCCCAAACAAATAGT
ATTTGGAGCGTAGAGGAAGTTGAGTTTCAAATACAACAGGGCTTGATTGA
GATGGATACGAAGGAAGGATTGCGCTTACCGTTGTGTCATGCGGAATGCA
GCATCCATGTCAAAACATGTCGGCAACGGGAGTAAGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1251:21488..22176+

>mRNA_P-littoralis_Contig1251.7.1 ID=mRNA_P-littoralis_Contig1251.7.1|Name=mRNA_P-littoralis_Contig1251.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig1251:21488..22176+ (Pylaiella littoralis U1_48)
ATGCGTGTGTATTCAGTGCCGCGTGTGTTCTGTGCTGGCGTACGCGCGGC
ACGCGCGCACGTTTTGTTTTTGTTGTTTTTGTTGTTTTTGCTGTTGTGGC
CAAGCCTGCGGGCGTGTATGTTGTTGAGGGCTTCTTACCTTGTCGGTTTG
AGGCGCTTCGCGTCCAAGTTTTTTTTTTTTGTCAGAGCTCGATGTCCTCA
GTCGGCCACGACAAGACATATGCCCCGTTCAGCGTTATTTTATGCGGGGC
ATCAGCAAAAGCCCCGGTTGGGAGGGACCGGTTATGAATTGGGATGTGGG
CGTGGTTGCGAGTGTGGTTGGGTGGCCGGGTGTGGGCCCAAACAAATAGT
ATTTGGAGCGTAG
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