mRNA_P-littoralis_Contig1251.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1251.15.1
Unique NamemRNA_P-littoralis_Contig1251.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1251.15.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.030e-36
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 3 
Query:    3 YTNLGASKYAKKEVRAEMLASSAYDTSIVSEGQASMQSL*NLATRSASDSNDATN------GSGGVCCQVPNEVFEEDEAPDTTMFGTTSLHSFYRLV 278
            Y  +GASKYAK+E+ AEMLASSAYDTSIV+EG+ SMQ L NLATRS +DSND+TN      G+G VCCQVP EVFEEDEAPDTTMFGTTSLHSF RLV
Sbjct:  329 YAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLV 426
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BLAST of mRNA_P-littoralis_Contig1251.15.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-18
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 3 
Query:    3 YTNLGASKYAKKEVRAEMLASSAYDTSIVSEGQASMQSL*NLATRSASDSNDATNGSGGVCCQVPNEVFEEDEAPDTTMFGTTSLHSFYRLV 278
            Y   GAS YA++E+ AEM+AS +YDT+++ +G+ S + L +LA + +++     +G+G VCCQVP +VF+  + PDT+MFGTT L SFYRLV
Sbjct: 1165 YEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPSNN-----DGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYRLV 1251
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BLAST of mRNA_P-littoralis_Contig1251.15.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.860e-9
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 3 
Query:    6 TNLGASKYAKKEVRAEMLASSAYDTSIVSEGQASMQS----L*NLATRSASDSNDATNGSGGVCCQVPNEVFEEDEAPDTTMFGTTSLHSFYRLV 278
            T++GAS YA  E+ AEM AS+AYDT+++++ QA   +    L  LA R             G C  VP E FE    PD TM+GTTSL SF  LV
Sbjct:  385 TDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTE--------GYCADVPAEAFEGSHDPDITMYGTTSLPSFAELV 471
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BLAST of mRNA_P-littoralis_Contig1251.15.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.900e-9
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 3 
Query:    6 TNLGASKYAKKEVRAEMLASSAYDTSIVSEGQASMQS----L*NLATRSASDSNDATNGSGGVCCQVPNEVFEEDEAPDTTMFGTTSLHSFYRLV 278
            T++GAS YA  E+ AEM AS+AYDT+++++ QA   +    L  LA R             G C  VP E FE    PD TM+GTTSL SF  LV
Sbjct:  731 TDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTE--------GYCADVPAEAFEGSHDPDITMYGTTSLPSFAELV 817
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1251.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLF6_ECTSI6.030e-3675.51Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE2.250e-1848.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEJ0_9PHAE1.860e-944.21SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.900e-944.21SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1251contigP-littoralis_Contig1251:47744..48198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.3643162-CDS-P-littoralis_Contig1251:47743..477811680789551.3643162-CDS-P-littoralis_Contig1251:47743..47781Pylaiella littoralis U1_48CDSP-littoralis_Contig1251 47744..47781 +
1680789551.3756511-CDS-P-littoralis_Contig1251:47957..481981680789551.3756511-CDS-P-littoralis_Contig1251:47957..48198Pylaiella littoralis U1_48CDSP-littoralis_Contig1251 47958..48198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1251.15.1prot_P-littoralis_Contig1251.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1251 47744..48198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1251.15.1

>prot_P-littoralis_Contig1251.15.1 ID=prot_P-littoralis_Contig1251.15.1|Name=mRNA_P-littoralis_Contig1251.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
STRILEPASTRRRRFGPKCWRARHTTPPSYRKDKPQCSPFRTWPRDRPVT
RTMRRTVVAACAARCPMRSLRKMKHPIRPCSVPHRCIPSTVL*
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mRNA from alignment at P-littoralis_Contig1251:47744..48198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1251.15.1 ID=mRNA_P-littoralis_Contig1251.15.1|Name=mRNA_P-littoralis_Contig1251.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=455bp|location=Sequence derived from alignment at P-littoralis_Contig1251:47744..48198+ (Pylaiella littoralis U1_48)
AGTACACGAATCTTGGAGCCAGCAAGTACGCGAAGAAGGTGAAAACGCCC
CATGACCTGCTTTGAGTGCCTGTGTCGCTTTGTCCTTATGGAGCGGTACG
TGCATGCAATGCCGGTACAAAGCGCAGTACTTCCACAGGTTCCCCGTAAC
ACCGCCACTTGTTTCCTCTCACCTCTCGCCTTTCCCCGCATCCCCTGCGC
CTGTACTACAACAGGAGGTTCGGGCCGAAATGTTGGCGAGCTCGGCATAC
GACACCTCCATCGTATCGGAAGGACAAGCCTCAATGCAGTCCCTTTAGAA
CTTGGCCACGCGATCGGCCAGTGACTCGAACGATGCGACGAACGGTAGTG
GCGGCGTGTGCTGCCAGGTGCCCAATGAGGTCTTTGAGGAAGATGAAGCA
CCCGATACGACCATGTTCGGTACCACATCGTTGCATTCCTTCTACCGTCT
TGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1251:47744..48198+

>mRNA_P-littoralis_Contig1251.15.1 ID=mRNA_P-littoralis_Contig1251.15.1|Name=mRNA_P-littoralis_Contig1251.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1251:47744..48198+ (Pylaiella littoralis U1_48)
AGTACACGAATCTTGGAGCCAGCAAGTACGCGAAGAAGGAGGTTCGGGCC
GAAATGTTGGCGAGCTCGGCATACGACACCTCCATCGTATCGGAAGGACA
AGCCTCAATGCAGTCCCTTTAGAACTTGGCCACGCGATCGGCCAGTGACT
CGAACGATGCGACGAACGGTAGTGGCGGCGTGTGCTGCCAGGTGCCCAAT
GAGGTCTTTGAGGAAGATGAAGCACCCGATACGACCATGTTCGGTACCAC
ATCGTTGCATTCCTTCTACCGTCTTGTAG
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