mRNA_P-littoralis_Contig1243.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1243.3.1
Unique NamemRNA_P-littoralis_Contig1243.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.800e-54
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = 1
Query:  433 IRKRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSS 1062
            +RKR+ G    P YGGPS G LT +N AV L++K+ S LR +ESG  +LE D  VDG + T  DE TPRR+E++S+ VQ +L+    + + + + V+ +TG+V  K   +VT TD+LRL VRE ALT G+ ELA +A  A+   P E W+AAAARV+ VFRAT A+ +RP ++E   FWRF T   +  L+ R+ +VL+PNPF+RNGVS+
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSA 210          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.080e-52
Identity = 102/221 (46.15%), Postives = 141/221 (63.80%), Query Frame = 1
Query:  433 IRKRLVGSLTPPFYGGPSPGTLTESNCAVF-----------LEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSS 1062
            +RKR+ G    P YGGPS G LT +N AV            L +K+ S L  +ESG  +LE D  VDG + T  DE TPRR+E++S+FVQ +L+    + + + + V+ +TG+V  K   +VT TD+LRL VRE ALT G+ ELA +A  A+   P E W+AAAARV+ VFRAT A+ +RP ++E   FWRF T   +  L+ R+ +VL+PNPF+RNGVS+
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMXXXXXXXXXXMLLDKVMSVLHNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDFVQEYLSVSQQIANADHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSA 221          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.920e-46
Identity = 102/246 (41.46%), Postives = 146/246 (59.35%), Query Frame = 1
Query:  331 RRTSYERRERLAFEGNSSKPPGFSDATSAKGFERIR--KRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSS 1062
            R+ S  R   LA  G     P + +  + +    +R      G    P YGGPS G LT +N AV L++K+ S LR +ESG  +LE D  VDG + TV DE TPRR+E++S+ VQ +      +   + + V+ + G+V  K   +VT TD+LRL VRE ALT  + ELA +A  A+   P + W+AAAAR++ VFRAT A+ +RP ++E   FWRF T   +  L+ R+ +VL+P PF+RNGVS+
Sbjct:  148 RKQSRRRSHTLAPSGYGGAVPSYEEWPAVRDPRALRWADSGRGDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHVYLINGEVITKPHREVTATDWLRLDVREHALTGVAAELACSAFSALTLTPEDGWSAAAARILSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPTPFDRNGVSA 393          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.440e-42
Identity = 90/196 (45.92%), Postives = 126/196 (64.29%), Query Frame = 1
Query:  472 YGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVS 1059
            Y GP PG L+ +N AV L +K+ S LRTL+SGV  LE D   +G  +T PD HT RR E+L++ +  HL T + + S + L+V+ + G V    R+ VT TD+LRL+VRE ALT G+ E A  AL ++V    E+   AAARV+  FRAT  + DRP V+E +FFWR+++   M  LF  +T+VL+PNP +  GV+
Sbjct:  148 YAGPGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVHTGRRRELLTDLLHEHLLTHNRITSADSLQVYRIAGQVVDTPRDSVTATDWLRLIVREHALTGGAVEYAYAALQSMVLGTPESMPTAAARVLAAFRATLVDPDRPHVTEQRFFWRYISAVQMIALFEGVTEVLLPNPVDGAGVN 343          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.430e-39
Identity = 80/173 (46.24%), Postives = 116/173 (67.05%), Query Frame = 1
Query:  541 STLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVS 1059
            S LRTL+SGV  LE D  ++G W+T PD HT RR E+L++ +  HL T + + S + ++V+ +TG+V    R+ VT T +LRL+VRE ALT G+ E A  AL A++    E+   AAARV+  FRAT  + DRP ++E +FFWR+++   M  LF R+T+VL+PNP +R GV+
Sbjct:    2 SVLRTLDSGVIALEPDVFLNGYWATQPDVHTGRRRELLTDLLHEHLLTHNQITSADTVQVYRITGEVVDTPRDSVTATHWLRLIVREHALTGGAVEYANAALQAMMLGTPESMPTAAARVLAAFRATLVDPDRPHITEQRFFWRYISAVQMIALFERVTEVLLPNPVDRAGVN 174          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5KZ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.280e-37
Identity = 85/215 (39.53%), Postives = 123/215 (57.21%), Query Frame = 1
Query:  415 AKGFERIRKRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVS 1059
            +K  ER RKR+   ++ P Y GP PG L+ +NCAV L++K+ S LRTL+SGV  LE D  ++G W+T PD HT RR E+L++ +  HL T + + S + ++V+  TG+V    R+  T TD+LRL+VRE ALT G+ E A  +L A+V    E+   AAAR++                                LF R+T+VL+PNP +R GV+
Sbjct:    2 SKVIERARKRVTDKVSGPVYAGPGPGELSINNCAVRLQQKVMSILRTLDSGVIALEPDVFLNGYWATQPDVHTRRR-ELLTDLLHEHLLTHNQITSADTVQVYRKTGEVVDTPRDSATATDWLRLIVREHALTGGAVEYANASLQAMVLGAPESMPTAAARMIA-------------------------------LFERVTEVLLPNPVDRAGVN 184          
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.670e-33
Identity = 78/180 (43.33%), Postives = 112/180 (62.22%), Query Frame = 1
Query:  523 LEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSS 1062
            L++K+ S LRT++SG+ +LE D  V+G + TV D+ TPRR+E+LS+     ++    + +   + +  L+G+V  K  EQ T TD+LRL VREQAL  G+ ELA  AL A+   P E W++ AA VV  F A  A+ +RP ++E   FW FVT   M  L+     VL+PN F+RNGVS+
Sbjct:    2 LQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDLAHEFMSVSQPIANAHTVNIHLLSGEVIAKPHEQATTTDWLRLYVREQALMGGA-ELARAALAAMTLSPGEGWSSRAASVVSAFGAARAHPERPYITEQALFWCFVTPVQMTALYDCEGQVLLPNAFDRNGVSA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1243.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE3.800e-5448.57RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5J849_9PHAE1.080e-5246.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE1.920e-4641.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFF6_9PHAE6.440e-4245.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8L9_9PHAE2.430e-3946.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ17_9PHAE4.280e-3739.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7F8_9PHAE5.670e-3343.33Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1243contigP-littoralis_Contig1243:7183..8244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1063
Hectar predicted targeting categoryother localisation
Exons1
Cds size879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789543.9354084-CDS-P-littoralis_Contig1243:7182..80611680789543.9354084-CDS-P-littoralis_Contig1243:7182..8061Pylaiella littoralis U1_48CDSP-littoralis_Contig1243 7183..8061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789543.9449167-UTR-P-littoralis_Contig1243:8061..82441680789543.9449167-UTR-P-littoralis_Contig1243:8061..8244Pylaiella littoralis U1_48UTRP-littoralis_Contig1243 8062..8244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1243.3.1prot_P-littoralis_Contig1243.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1243 7183..8061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1243.3.1

>prot_P-littoralis_Contig1243.3.1 ID=prot_P-littoralis_Contig1243.3.1|Name=mRNA_P-littoralis_Contig1243.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=293bp
MAASPPRGDRSVRRKRAAEDDWETPPPRIGAHLAPWEIEALRWTAKRAER
RTSYERRERLAFEGNSSKPPGFSDATSAKGFERIRKRLVGSLTPPFYGGP
SPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHT
PRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYL
RLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANA
DRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSS
back to top

mRNA from alignment at P-littoralis_Contig1243:7183..8244-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1243.3.1 ID=mRNA_P-littoralis_Contig1243.3.1|Name=mRNA_P-littoralis_Contig1243.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig1243:7183..8244- (Pylaiella littoralis U1_48)
AGCCATGTCTGGTCGTCGTTTCGCAGCTAGGAACAACTCGCAGCGCGTGC AACCTGTCCATGGTCACTATGGACCCGCCCCTGCCCGCGAGAATCGGGGC CGTAGGGCCAACCGTGGTGACAGCAGGGACCGGCCCAGGAGGCAGGGCGA CGCTGATGGCCCCCTCGGGGAGGCTATGCAGCTATGGCTGCCTCGCCCCC TCGTGGTGATCGTTCGGTCAGGCGCAAGCGTGCTGCCGAAGATGACTGGG AGACTCCGCCTCCCAGGATCGGAGCGCACCTCGCCCCCTGGGAGATCGAG GCTTTGCGATGGACAGCAAAGCGGGCGGAGAGGCGGACAAGCTACGAGCG CCGCGAGCGCTTGGCCTTCGAAGGAAATAGCAGTAAGCCCCCGGGTTTTT CTGATGCCACTTCGGCAAAAGGATTTGAGAGGATTCGTAAGCGCTTGGTA GGTTCGCTCACCCCGCCCTTTTACGGAGGGCCATCCCCAGGAACCCTCAC TGAATCCAACTGCGCCGTGTTTTTGGAAGAAAAAATGCGCAGCACGCTTC GTACGCTGGAATCAGGTGTAGCACAACTGGAGAAAGATGAGTTGGTTGAT GGCGGGTGGTCCACTGTACCTGATGAGCACACACCGCGTAGGATCGAAAT GCTTTCGGAGTTCGTTCAGGGCCATTTGGCCACGCGCGACGCCATGGACT CAGATGAACCCCTTGAAGTGTGGTCACTCACAGGCGATGTTCAGATCAAA CGCAGGGAGCAGGTGACATGCACTGACTATTTGCGCCTGTTGGTTCGCGA GCAGGCGCTTACCAGTGGCTCCAGAGAGCTGGCAGAGACAGCTCTCGACG CCATTGTTCGCCAGCCCAACGAAGCCTGGGCTGCTGCCGCAGCTCGCGTG GTTAAAGTATTTCGTGCAACTTTCGCCAACGCAGATCGCCCGTGTGTGTC CGAGACACAGTTTTTCTGGCGTTTCGTTACCGAGGCGGACATGCGCCACC TGTTCTCTCGTCTCACGGACGTGCTGATGCCCAACCCTTTCGAACGCAAC GGTGTGTCTAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1243:7183..8244-

>mRNA_P-littoralis_Contig1243.3.1 ID=mRNA_P-littoralis_Contig1243.3.1|Name=mRNA_P-littoralis_Contig1243.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig1243:7183..8244- (Pylaiella littoralis U1_48)
ATGGCTGCCTCGCCCCCTCGTGGTGATCGTTCGGTCAGGCGCAAGCGTGC
TGCCGAAGATGACTGGGAGACTCCGCCTCCCAGGATCGGAGCGCACCTCG
CCCCCTGGGAGATCGAGGCTTTGCGATGGACAGCAAAGCGGGCGGAGAGG
CGGACAAGCTACGAGCGCCGCGAGCGCTTGGCCTTCGAAGGAAATAGCAG
TAAGCCCCCGGGTTTTTCTGATGCCACTTCGGCAAAAGGATTTGAGAGGA
TTCGTAAGCGCTTGGTAGGTTCGCTCACCCCGCCCTTTTACGGAGGGCCA
TCCCCAGGAACCCTCACTGAATCCAACTGCGCCGTGTTTTTGGAAGAAAA
AATGCGCAGCACGCTTCGTACGCTGGAATCAGGTGTAGCACAACTGGAGA
AAGATGAGTTGGTTGATGGCGGGTGGTCCACTGTACCTGATGAGCACACA
CCGCGTAGGATCGAAATGCTTTCGGAGTTCGTTCAGGGCCATTTGGCCAC
GCGCGACGCCATGGACTCAGATGAACCCCTTGAAGTGTGGTCACTCACAG
GCGATGTTCAGATCAAACGCAGGGAGCAGGTGACATGCACTGACTATTTG
CGCCTGTTGGTTCGCGAGCAGGCGCTTACCAGTGGCTCCAGAGAGCTGGC
AGAGACAGCTCTCGACGCCATTGTTCGCCAGCCCAACGAAGCCTGGGCTG
CTGCCGCAGCTCGCGTGGTTAAAGTATTTCGTGCAACTTTCGCCAACGCA
GATCGCCCGTGTGTGTCCGAGACACAGTTTTTCTGGCGTTTCGTTACCGA
GGCGGACATGCGCCACCTGTTCTCTCGTCTCACGGACGTGCTGATGCCCA
ACCCTTTCGAACGCAACGGTGTGTCTAGC
back to top