mRNA_P-littoralis_Contig1223.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1223.3.1
Unique NamemRNA_P-littoralis_Contig1223.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1223.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1223contigP-littoralis_Contig1223:2323..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.6854424-CDS-P-littoralis_Contig1223:2322..24041680789530.6854424-CDS-P-littoralis_Contig1223:2322..2404Pylaiella littoralis U1_48CDSP-littoralis_Contig1223 2323..2404 +
1680789530.695623-CDS-P-littoralis_Contig1223:3157..32401680789530.695623-CDS-P-littoralis_Contig1223:3157..3240Pylaiella littoralis U1_48CDSP-littoralis_Contig1223 3158..3240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1223.3.1prot_P-littoralis_Contig1223.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1223 2323..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1223.3.1

>prot_P-littoralis_Contig1223.3.1 ID=prot_P-littoralis_Contig1223.3.1|Name=mRNA_P-littoralis_Contig1223.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
FRRADGVVRGPDREVHAAVYAKKAHQERLFAVGTLKDIHRGASQAVRYWT
TTKQT
back to top

mRNA from alignment at P-littoralis_Contig1223:2323..3241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1223.3.1 ID=mRNA_P-littoralis_Contig1223.3.1|Name=mRNA_P-littoralis_Contig1223.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=919bp|location=Sequence derived from alignment at P-littoralis_Contig1223:2323..3241+ (Pylaiella littoralis U1_48)
TTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATGC
TGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTGGGTGATTATCTTTC
GGGTCGTGTTCAAGGTTTCATTTGTTTTTTGTGGGAATTCTGACTATATT
TGTGGTACGAACCGCTACTTTTCCACCCTTTTGCGTGCGAACGAGACGAA
AGTGCCACGGAATGTCGAATCTTCGGCTGGCATGCCTGACAAGAGCGACG
TTTGAAGATGTATGCAGGCGTGCACCGTACTGCGAAGTTCATGTCGCGGT
ACAAGTAAAAACAAAACATGATGGACCGCGGGTGGTTCATTTTGGATGGT
GTCTTTCTTGTGATGTGTTTGGGGTTCCTGTGATGTTGATTGCATTCGGT
ATAAGAGTCGTAAATTTTCCTCTGTCTTCGCGTGCGAGCGCCGCAAGAGT
GTTGCAGACTGTGGAACGTGCGGCTGGCATGCGTCGCAAGGGTGACATAT
GATCCGGAATCTACATGCGTTCGTATAGAGAGGCAATGCCCACCATGTGA
CGCGCTCGCTTGCGTGCCCGCGCTTTTTCTCAGGGCTGAAACTGTGCGCA
GTGGCGTGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGGTTT
CGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGGTTGCCCGCTCGGCCGGA
CTTGCCGGGTGGTCTTGTTCGTATTGTTCGGGGCTTGCCCCAACCTCGCG
GAGCAGCTCCTGCAATCTGGTACCTACGTGGCCATGGACAACTTTTTTTC
TTCGCCTGTCCTCTTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTGTGG
GTACACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGG
ACCACCACCAAGCAGACCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1223:2323..3241+

>mRNA_P-littoralis_Contig1223.3.1 ID=mRNA_P-littoralis_Contig1223.3.1|Name=mRNA_P-littoralis_Contig1223.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1223:2323..3241+ (Pylaiella littoralis U1_48)
TTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATGC
TGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTTGTTCGCTGTGGGTA
CACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGGACC
ACCACCAAGCAGACC
back to top