mRNA_P-littoralis_Contig1221.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1221.1.1
Unique NamemRNA_P-littoralis_Contig1221.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1221contigP-littoralis_Contig1221:2210..7269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.2644439-UTR-P-littoralis_Contig1221:2209..23781680789530.2644439-UTR-P-littoralis_Contig1221:2209..2378Pylaiella littoralis U1_48UTRP-littoralis_Contig1221 2210..2378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.2759888-CDS-P-littoralis_Contig1221:2378..23811680789530.2759888-CDS-P-littoralis_Contig1221:2378..2381Pylaiella littoralis U1_48CDSP-littoralis_Contig1221 2379..2381 +
1680789530.2859747-CDS-P-littoralis_Contig1221:7089..72691680789530.2859747-CDS-P-littoralis_Contig1221:7089..7269Pylaiella littoralis U1_48CDSP-littoralis_Contig1221 7090..7269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1221.1.1prot_P-littoralis_Contig1221.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1221 2379..7269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1221.1.1

>prot_P-littoralis_Contig1221.1.1 ID=prot_P-littoralis_Contig1221.1.1|Name=mRNA_P-littoralis_Contig1221.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MLAEAPPEIDDDDDLSGQMGLVSMMDRECLLAMLSAHAAVDSRRGVGEFG
GNKESGDGGGL
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mRNA from alignment at P-littoralis_Contig1221:2210..7269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1221.1.1 ID=mRNA_P-littoralis_Contig1221.1.1|Name=mRNA_P-littoralis_Contig1221.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5060bp|location=Sequence derived from alignment at P-littoralis_Contig1221:2210..7269+ (Pylaiella littoralis U1_48)
TCACCTGGGGAACGTCAAGTAATGTAAACTATCTTCGTTGGGTTCATATC
TTTACCTCCTGACCGCCGACAGCACAAAACACGCTAGCGATTAGGTATAC
CTTAGGGCTCTCGGCTAGACAGGAGGACCACATCGCGAGAAGCGATGTCG
GGCGAAGATTTTTCAGAAGATGGTGGACAGGGCGACGGGATGGACAACAG
CCTCAACACCAACTTTACACACGACCAAATGGTCACGATCAGGGAGCTTC
TCGCGACTGCGACAGCAACAGCGACTGCCAATGCAACGGCGGCCGCCATT
GAAGCAGCATCTCTGGCCGCGCAAGCTGCGGCTACCTATACAGCAACACC
ACCGCCAAACCCCACATCAACAGCGCAAGCACAACATGCTTTTGCACACG
AACAAGCCCAAGCCCACCAGGAGGACAGAGCCACACACGACATCGAGCGT
ACGGACGGAACCTCATCTGCGGGACAGGACACCGTGGTGCAGCAGCTAAT
CACTGCGCTGGGAAGAATGGGGACAACGCCCAACCAAGGGTCGACGGTTA
GCACGTATAGTCAGGGCAGTAGAGTGGAATTTACTGGAAAGAGGGGGGAA
GATGAGCCGACAATGTTCATGGTACGGTTTGAGTCTTTATTTCGATCCAT
GGAGTTGGAAGATGCGTTTTGCAGGACAGTACCGATCAAGGTAGGAGTGC
TGTCCAGGGAGGAATTGTACGGGCAATTTCACAGACGTGAGGTAGATGCT
GCTTACAGGGCTTGGAACCTGCTCCTGAACAGTGTGGTAGACGTCGCAAT
GATGGTCAGGATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGT
TCAAGAATTACTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGA
CAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTT
TTTTTCCAGGGTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTG
TAATGGAGGAGAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCG
CTGTTTAACACGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCG
CGCGAATATAGAGAGTGTGGTGCTCAACAAACATGGAGCCATGGAGATGG
ACTCGAAGAAGAGGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCG
CAGGACGCGGGATCGGGGGCGGCGGAGGGAACAACGGCGGTGGCAACGGA
GGACACTTCATGGGGACACCGCATGGAGGGACGCATCAACGACCGCCGTA
CAGGGCGCCGCAGCAACAACAGCAGCAACAGAACCAACAGCAGCTGCGGC
AACAACCGCAAGATCACCAACGGCGCCCCGACTCTCGCCCATTCTGTACC
TACCATCAGATTTATGGACACAGCAACGAGGAGTGCCACAGGAACGTGCG
GCGAGGGGGCTACGCACAGCAGCAACATGGATTTCGCCAACAGCGTCAGT
CGGGTGGAGGCGCAAGGGGGCAAGGGGTACCGCAGCAACAGCACAACAAC
GGGGGAGGAGGTCATCAAGTCCCTGAAAGGTATGGTGCTGGAAGTAGTGG
TCCGAGGTGGGCAGACGCGAAAACTTTGCCTGCGTATCAGGCCCCTGACG
GGGATACAACTACGACAGATGCCCGGCGGGCATGTACCGCCCACAAGGAA
ATGAACCCCCTATCCACGGGGCGGATCCACGACAGCGGTGCATCTCGTGT
GGTGAGTTTGGACACATTCACCAATTTTGCCCCGCGAGGACCAAGATACA
TCCGCCCGATCCCGGTATAGTCCGACAGCCAACCAGCAACACCAATCCCT
GGAAGCATTCGTACGGCGCTTTTCCCGCCCAGGCGGCTCACGCCGTGGTC
GAGACTTCTGCTGTACAGCAGCAAACACCAGGGGGCATCAACAACAGCAG
CAGCAGGAATATGCGGCGAGACTGCAGCAGTCGCAGCAGGATGCTCGAAT
CACATCTCAGCAGCCATCACCACCGCAGCAGGCAACCTACCGCTACACAA
CAGCAGCCAGCTCCGTCGCTCCTCTCTCTTCTTCGGATCCGTCTCCGGGG
CTTCATGGGGCAGGGCGCTCACTCATGGCTTTGAGTGTTCCAGAAGGCGA
GTTTGTTTTTTCTGGTGAGGGTTTTGCAGCGAGCGAGATTGATTTTTCTG
GTACGGGATCATGGGGCAGAGAAGGGGGATGGGAGATGTTGCGCTTACCA
CTCAACAACATAACGGTATTACTCCACCACCCACACTATGGTTTGCCGAC
AGTGGTGCGTCCAAAAGTATGACATCTGATCCTAGTTTGATGTACAACAT
GCGTGAACCCCCCCCTGGTAGCAGTAGGATAGTGATTGCGGGAGGTGCGA
CTTTGCGTGTGGTTGCCTGCGGTGATTTGGATTTGATCATGCATGCACGC
ACCGATTTTTTGGTACGGATGACAAGCGTCTTGCTTGTGGAGGATCTCTC
CTTCAATCTTTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTGTGCTA
GATGAGCAAGGGACACATTTATTCGACGGTCAACTCACGTTTCCGTACAA
TGAGACGGGATCTTATTTGCACGCGACTCGCGTGCCTCACCAACCCTCTG
CTTTTGCCGCTGCTACCGCTCTGCAAGCCGCCCCTGGTTTTCCCTCTGGT
TTTCCCCCTTCAGGCAACTCTGATTTTTCTGAGTCAGGTGTCCAGTCCAC
CGCTTCGGGTGTGGTGACCTCCGCTTCCGGTTTCCAGCCCACTGGTTCTG
GTGTCGTGTCTTCGGCTTCTGGCATACCATCCGCCGAGAACGGTGTAGTA
CCTTGTGCCTCCGATTTTTCAACCACCCCTTCAGCTGTAGTACCATTTGA
TTGTGGTTTCGCTTTGGACGCTACCTCGGTAGACACTTTGCTGCAGATGC
TTGATGCCCGCCCCGCTTTAGAATTGCTTGAGCGACACATGAGCATGCCC
TCCACTGATTTTTTGTTCGACGAAAGACTGCTGGCCGCTATTCTGCCTGA
CGTGGATCATTTTTGTGCGCGCGACCCTGATTTTCTGCCGTTTGCTCTAA
ACGCCGTCGATGCCCTTGCTCTCCAGCAAGAAGAGTGGTATGCACTCTTT
CCGTATGTAGAAGTTGAGCTTGAAACTGGGCCGCTTTTTGATGGGATGAC
TAGCTTTGCTGCGCTTGCTCCGAGTAAGAAGCCTTATTTTGTAGGCAAAC
GGCCAACCTCGGAAGATATAAACGTCTTTCATTGCGGTAACGGCCATCTT
GGTCAGCGTTCTCTTGCAGCCACTGCCAGGTCCCACGGACTTCGCCTCAC
CAACGATCTTTTGCCGTGCGAGAGCTGTGTGGCGGCTACAGGGCGTCGGG
CTTCATGCCCGCACCGGACCACATCGAGAGCAACCGAGCCGTTGGGCACG
GTGCTGCTCGATATCGCGGGGCCTTTCGAGGCATCGCACGGGGGGTCCAA
CTACATGGTCGGCTTCGTCGACAGCTGTTCTCGGCGCGGCCAGGTCTATG
GCATGCGCACCAAGGCGGACCTTCTCGTCTACGTTCAAAAGTTCATCGCG
GACATCGGCAAACCGAAGTGCTTCCGTATGGACAACGCCGGCGAGAATAC
CAGCCGGCGTTTCGTGACTTTCTGCGACGAAAACGCCATTCGGCGTGAGT
ACACCGCGCCGCACACAGGGCAACAAAACGCCCCCGTCGAAAGTTTGCTG
TGGCGTGTTCTCAAGGGGGGACACTCTGCAAGGCTGGATATACGGCGGAT
TTTTCCTTTGCTGGATTTTTCAGCGATGGAGCACCTGGGTCCCGATTTTG
AGCGGCTGTGGATGGAGGCAGCTCTTTGGGCGTGCGAATGCATCAATCGC
TCTTCTTCTTCGGCGAACGCGGGCTTGCTTTCGCCGGACGAAGTCTTCTT
CGGAAAGCCTCCGCCGCTTCAAATTGTCCCATTTTTTCAGCCGGGCATGA
TGCGAGTGGAGCGGGCGCGCAAGGGTGATGTTCGGGCGGTGCGGTGTTAC
TATCTGAACGGTGGCTACAACCACTCATCGGCGTGCGTCAAGGTGCTCAA
CGCCGAGACATGGGCCGTGTGCCACACGAAGGACATTGTGTGGACGGTGC
CGCAGGTTCGGCCACCTGCGGCGATACCGCCCGCAGCCGAGGGGGAAATG
GGATCGTCTCCGAGCTATTACCGCCGCAGGACACCGCTGTTTACACCACC
ACCACCGCTGCCGAGCCTGCTCCTGCCACTACCGCCGCCGCTCGTGCTGC
TGCCGCTCCAGGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCC
CCGAGCCTGCCGCCGCCGAGCCTGCCGCTACTGCCACTACCGCCGCCGCT
CGTGCTGCTGCCGCTCCAGGGTGCACCGCCGTTCCGCAAATGATCGGCGC
TCTCCGCCCCGAGCCTGCCGCCGCCGAGCCTGCCGCTACTGCCACTACCG
CCGCCGCTCTTGCTGCTGCCGCTCCAGGGTGCACCGCCGTTCCGCAAATG
ATCGGCGCTCTCCGCCCCGAGCCTGCCGCCGCCGAGCCTGCCGCTACTGC
CACAACCGCCGCCGCTCGTGCTGCTGCCGCTCCAGGGTGCACCGCCGTTC
CGCAAATGATTGGCGCTCTCCGCCCCAAGCCTGCTGCCGCCGAGCCTGCC
GCTACCGCCGCCGCTTCTGCCGCTTCTGCTGCTGCTGCCAATCCGGAGCA
GGAACCTTTGACTCGGAGGGCGATACGAGAACTCGCACCCGGGAGGGCGA
CGGAGGGCATGGCCGACCCTCGGCGGATGGGCAGGACGAGATCTTCAACG
AGACACCAGGCTCCCTCTCCTCTGCCGCAGCTGGCGGAAGCACCGCCGGA
AATTGATGACGACGATGACCTTTCAGGGCAGATGGGCCTTGTCTCCATGA
TGGACAGGGAGTGCCTGCTCGCGATGCTCTCCGCGCATGCGGCGGTCGAC
AGCCGCCGGGGTGTTGGGGAGTTTGGGGGGAACAAAGAGTCTGGAGATGG
TGGAGGTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1221:2210..7269+

>mRNA_P-littoralis_Contig1221.1.1 ID=mRNA_P-littoralis_Contig1221.1.1|Name=mRNA_P-littoralis_Contig1221.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1221:2210..7269+ (Pylaiella littoralis U1_48)
ATGCTGGCGGAAGCACCGCCGGAAATTGATGACGACGATGACCTTTCAGG
GCAGATGGGCCTTGTCTCCATGATGGACAGGGAGTGCCTGCTCGCGATGC
TCTCCGCGCATGCGGCGGTCGACAGCCGCCGGGGTGTTGGGGAGTTTGGG
GGGAACAAAGAGTCTGGAGATGGTGGAGGTTTG
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