mRNA_P-littoralis_Contig1220.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1220.5.1
Unique NamemRNA_P-littoralis_Contig1220.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1220.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1220contigP-littoralis_Contig1220:47972..48268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.0484178-CDS-P-littoralis_Contig1220:47971..480801680789530.0484178-CDS-P-littoralis_Contig1220:47971..48080Pylaiella littoralis U1_48CDSP-littoralis_Contig1220 47972..48080 -
1680789530.0586576-CDS-P-littoralis_Contig1220:48209..482681680789530.0586576-CDS-P-littoralis_Contig1220:48209..48268Pylaiella littoralis U1_48CDSP-littoralis_Contig1220 48210..48268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1220.5.1prot_P-littoralis_Contig1220.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1220 47972..48268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1220.5.1

>prot_P-littoralis_Contig1220.5.1 ID=prot_P-littoralis_Contig1220.5.1|Name=mRNA_P-littoralis_Contig1220.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
SPPSTRRSSSRRKQAPTVDSDQDAEARPGTEEKKPASGASDENAVVMMAN
RWACRW
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mRNA from alignment at P-littoralis_Contig1220:47972..48268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1220.5.1 ID=mRNA_P-littoralis_Contig1220.5.1|Name=mRNA_P-littoralis_Contig1220.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1220:47972..48268- (Pylaiella littoralis U1_48)
TCCCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGGCGCCGAC
AGTGGACAGGTCAGGACCATTGCTTTTGCTAGTATCGAAAACACTTCGAT
GAGGGGCAGGGTGGAAGAAATTTTTTGCAGAAGTCGTTATACTCTTTTCA
CCCTCGTGACGTTCATCTCTTTGTTTCAATTTTTGTAGCGATCAAGACGC
GGAGGCGAGGCCAGGGACTGAGGAGAAGAAGCCTGCCTCAGGAGCGTCCG
ATGAGAACGCGGTCGTGATGATGGCGAATCGATGGGCATGCAGATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1220:47972..48268-

>mRNA_P-littoralis_Contig1220.5.1 ID=mRNA_P-littoralis_Contig1220.5.1|Name=mRNA_P-littoralis_Contig1220.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1220:47972..48268- (Pylaiella littoralis U1_48)
TCCCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGGCGCCGAC
AGTGGACAGCGATCAAGACGCGGAGGCGAGGCCAGGGACTGAGGAGAAGA
AGCCTGCCTCAGGAGCGTCCGATGAGAACGCGGTCGTGATGATGGCGAAT
CGATGGGCATGCAGATGG
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