mRNA_P-littoralis_Contig122.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig122.126.1
Unique Name	mRNA_P-littoralis_Contig122.126.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.710e-13
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + DDF+LL +WN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++ D R   L  ++
Sbjct:  129 YLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRV 211

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.320e-13
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM*SRCCCSGTSSPVLRK 924
            Y+ E    + DDF+ L +WN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++ D+R         +RC    TS+ +LR+
Sbjct:  544 YLAEQPQVDVDDFNPLGFWNRRGTDSVSAATGKVSSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLRCNYFRTGSSARCWSGSTSTCLLRR 642

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.450e-12
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGV-DAEGNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E      DDF++L +WN RG D V    GNV  PA  P++  +ARL  G++ +SCQAERNFSAL  ++  +R   L RK+
Sbjct:  134 YLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKV 216

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.550e-12
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGV-DAEGNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E      DDF++L +WN RG D V    GNV  PA  P++  +ARL  G++ +SCQAERNFSAL  ++  +R   L RK+
Sbjct:  699 YLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKV 781

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + D F++L YWN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++  +R   LP K+
Sbjct:  516 YLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKV 598

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + D F++L YWN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++  +R   LP K+
Sbjct:  711 YLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKV 793

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.330e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + DDF+LL +WN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++ D+    L  ++
Sbjct:  512 YLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRV 594

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.160e-11
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAE-GNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + D F+L+ +WN RG D V A  G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++ ++R   LP ++
Sbjct:  408 YLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRV 490

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BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.160e-10
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGV-DAEGNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E    + D F+L+ +WN RG + V    G V  PA  P++  +ARL  G++ TSCQAERNFSAL  ++  +R   L RK+
Sbjct:  394 YLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKV 476

[Close]

BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.050e-9
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1

Query:  631 YMKEAAAANDDDFDLLKYWNARGIDGVDAEGNVVVPAPWPHVGLLARLCAGVDTTSCQAERNFSALKKVLSDMRAGTLPRKM 876
            Y+ E  A  + DF LL++W  R      AE   V P   PH+ L+ARL  G+++TSCQAERNFSAL  ++  +R+  LP K+
Sbjct:  374 YLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPG-LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKV 454

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig122.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5L7P7_9PHAE	6.710e-13	45.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZU3_9PHAE	7.320e-13	42.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJT6_9PHAE	1.450e-12	44.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRT6_9PHAE	8.550e-12	44.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	1.020e-11	45.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	1.150e-11	45.78	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5JQI6_9PHAE	4.330e-11	44.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	5.160e-11	43.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDJ6_9PHAE	5.160e-10	42.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAN7_9PHAE	5.050e-9	43.90	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig122	contig	P-littoralis_Contig122:372979..374046 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	1068
Hectar predicted targeting category	other localisation
Exons	1
Cds size	246

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789528.840373-UTR-P-littoralis_Contig122:372978..373167	1680789528.840373-UTR-P-littoralis_Contig122:372978..373167	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig122 372979..373167 -
1680789528.86324-UTR-P-littoralis_Contig122:373413..374046	1680789528.86324-UTR-P-littoralis_Contig122:373413..374046	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig122 373414..374046 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789528.8530295-CDS-P-littoralis_Contig122:373167..373413	1680789528.8530295-CDS-P-littoralis_Contig122:373167..373413	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig122 373168..373413 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig122.126.1	prot_P-littoralis_Contig122.126.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig122 373168..373413 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig122:372979..374046-
coding sequence from alignment at P-littoralis_Contig122:372979..374046-

protein sequence of mRNA_P-littoralis_Contig122.126.1

>prot_P-littoralis_Contig122.126.1 ID=prot_P-littoralis_Contig122.126.1|Name=mRNA_P-littoralis_Contig122.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MKEAAAANDDDFDLLKYWNARGIDGVDAEGNVVVPAPWPHVGLLARLCAG
VDTTSCQAERNFSALKKVLSDMRAGTLPRKM*

mRNA from alignment at P-littoralis_Contig122:372979..374046-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig122.126.1 ID=mRNA_P-littoralis_Contig122.126.1|Name=mRNA_P-littoralis_Contig122.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig122:372979..374046- (Pylaiella littoralis U1_48)
CTGAGGGAGGAGTGTGAATAGCAGAAAATGTGTGGGGAAGGGGGGTAGGG
AGTCCGGCCCACACACACACAACACACTCTCCCACATCGGCTGCCTCCCA
CACAACAACATATGGCTACCCTTTCGATGGCGACGCCGAGGAGGTGCCCG
TGTCGAGCCTTCTGGACGAGGTTCAGAACCTCCTCACGATTCTGGTACAA
GACATGAAATCCAGGGGCTTAGCGCTTGCCCTAAAGTCGGCGGAGCAGAT
ATGCCTGGTGCTCGATCCTCGTTTTAAGTCCTGAGGCAAATCTGTTGGTT
GTGGCAACGGGGGACACCTCCTGAAGGACGACGCAGTCATTGCGGTGGAG
GGGAATTTGGTGAAATTCTCCGGCACTATGTCTGCAGCGGGCACGGGCGC
AGGCATCGAAGGAACGGGGAATGCTTCGGGGGGCTCTTCGTAGGCTTCTT
CTCCGGGGGCGGCACCGGGTGTGACTCCCGCCCACGGAGGTGCTGCCCCG
CCCGGGCCGGCCCCAAAGATGTCCAGAATGGACAAGATCAGAGCGAGTCT
GAGCAGCAAAGTCTACTCCCGCGGGCGACGTGGATGCTGCAGAGGATCGA
GCGGACGCGGCAGCGAGCGAGTTTGCCGAGTACATGAAAGAAGCAGCCGC
GGCCAATGACGACGACTTCGACCTACTCAAGTACTGGAACGCGCGGGGCA
TTGACGGGGTAGACGCGGAAGGGAACGTTGTAGTGCCTGCCCCCTGGCCG
CATGTAGGGTTGCTAGCACGTTTGTGCGCAGGCGTAGATACCACTAGCTG
TCAAGCGGAGAGGAACTTTTCCGCCCTCAAGAAGGTCCTCAGTGACATGC
GTGCCGGTACCCTGCCGCGCAAGATGTAGAGCAGATGCTGTTGCTCAGGC
ACCTCATCCCCGGTTTTGCGAAAGTAGAGCAAGAGCTGGCCGCATTGAAG
GCAAGGCATGATGCAAACGCAAAGGAGTCGATTGCCGCCCAGCAAGCCAG
GGAAGGTAACACTTTCACCCTGAACAAGTAGGGTTGCTGTCCTATCGCAT
TTCAAGTACCAATTTCCA

Coding sequence (CDS) from alignment at P-littoralis_Contig122:372979..374046-

>mRNA_P-littoralis_Contig122.126.1 ID=mRNA_P-littoralis_Contig122.126.1|Name=mRNA_P-littoralis_Contig122.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig122:372979..374046- (Pylaiella littoralis U1_48)
ATGAAAGAAGCAGCCGCGGCCAATGACGACGACTTCGACCTACTCAAGTA
CTGGAACGCGCGGGGCATTGACGGGGTAGACGCGGAAGGGAACGTTGTAG
TGCCTGCCCCCTGGCCGCATGTAGGGTTGCTAGCACGTTTGTGCGCAGGC
GTAGATACCACTAGCTGTCAAGCGGAGAGGAACTTTTCCGCCCTCAAGAA
GGTCCTCAGTGACATGCGTGCCGGTACCCTGCCGCGCAAGATGTAG