mRNA_P-littoralis_Contig10.185.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.185.3
Unique NamemRNA_P-littoralis_Contig10.185.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Match: D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 8.360e-82
Identity = 202/411 (49.15%), Postives = 237/411 (57.66%), Query Frame = 3 
Query:  258 GLESVKTALLAAHGDVRLQCKAANALASLCMSEEVARGFSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEG-TALHEIVPFVTQLMVKYTITDDEVFIREERQRSERGSWRRNRISKAGDNRGXXXXXXXXXXXXXSKESNQDEADQEQARERMDTIRVYTLIFLLKASHTDPSTMPAMVEAGAIPGLLRHLASAREESPYSQQQXXXXXXXXXENPAVHEGFHTRQKGRIFGGHRHRTDEDLDHEQKDQSSPSFLLAARLLYAFSVDSSVRKSLLEAKCLPPLIRIRRRLQ---AAEAAAXXXGTAAGSTVEPELAC--IGTKDLEGKTALLAGKGALAVEEEGADLGNQTAHPSSRCTAAGNENSSCSERGVKQMDGESGQPPLEAMVGFLVDQLVGRAS 1472
            GLE+VK ALL  H D+RLQCKAANALASLCMSEEVARGF+AAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWL+G + G TALHE++P VT+LMV++T  DDEVFI EERQR ++  W R+R S +   RGXXXXXXXXXX             ++QARERMD IRVY+LIFLLK    D                                                     R +G +FG   H TD +      DQ+ PS LLAARLLYA S+D   R SLLEAKCLPPLIR+RR+L    AAEA  XXX     + V+P L C  I      G  A     G   VE+EG  +GNQ A  S    A G+ +S     G+            E +V  +VDQLVGR++
Sbjct:   17 GLEAVKDALLKTHADIRLQCKAANALASLCMSEEVARGFTAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLVGTLAGGTALHELIPLVTRLMVRHTTKDDEVFISEERQREQQAVWGRSRSSNS---RGXXXXXXXXXXDK-----------EDQARERMDNIRVYSLIFLLKKQEADS---------------------------------------------------VRARG-VFGQRHHGTDGNAADGGGDQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQLHTEAAAEATXXXXXXXTTAAVQPALECTKIPAGPNSGSAAFARKGGTEEVEKEGF-VGNQQAQHSGGDVATGDSSSEPDVEGI------------EVIVSLIVDQLVGRSN 348
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BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Match: A0A5D6YD55_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD55_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.050e-6
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  171 AIADAMTEVAALPCSPEGL----LLRSSVAAGGGLESVKTALLAAHG--DVRLQCKAANALASLCMSEEVARGFSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEGTALHEI 515
            A  DA+T +AALP    G+    LL  S    G        ++AA    DVRL+CKAA+AL SLC+S  VA       + +A +  L  M  SR++WAQADA   LGW++   +  AL ++
Sbjct:   61 AFVDALTTIAALPVDALGMETRRLLVDSGECDGEAGDAAARVVAALDCRDVRLKCKAASALGSLCVSR-VAGQRLLELHGAAALRSLARMATSRNRWAQADALAVLGWVVVIADERALAQV 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF3_ECTSI8.360e-8249.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YD55_9STRA4.050e-638.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:670818..675159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQF3
Model size1786
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.45e-84
EggNOG OGs28MT9@1|root,2QUBJ@2759|Eukaryota
Cds size1419
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.185.3prot_P-littoralis_Contig10.185.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 670889..674863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789333.8886185-UTR-P-littoralis_Contig10:670817..6708881680789333.8886185-UTR-P-littoralis_Contig10:670817..670888Pylaiella littoralis U1_48UTRP-littoralis_Contig10 670818..670888 +
1680789333.967234-UTR-P-littoralis_Contig10:674863..6751591680789333.967234-UTR-P-littoralis_Contig10:674863..675159Pylaiella littoralis U1_48UTRP-littoralis_Contig10 674864..675159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789333.9013736-CDS-P-littoralis_Contig10:670888..6710731680789333.9013736-CDS-P-littoralis_Contig10:670888..671073Pylaiella littoralis U1_48CDSP-littoralis_Contig10 670889..671073 +
1680789333.9200718-CDS-P-littoralis_Contig10:671398..6715511680789333.9200718-CDS-P-littoralis_Contig10:671398..671551Pylaiella littoralis U1_48CDSP-littoralis_Contig10 671399..671551 +
1680789333.932236-CDS-P-littoralis_Contig10:673050..6734231680789333.932236-CDS-P-littoralis_Contig10:673050..673423Pylaiella littoralis U1_48CDSP-littoralis_Contig10 673051..673423 +
1680789333.9435403-CDS-P-littoralis_Contig10:673741..6740551680789333.9435403-CDS-P-littoralis_Contig10:673741..674055Pylaiella littoralis U1_48CDSP-littoralis_Contig10 673742..674055 +
1680789333.9552794-CDS-P-littoralis_Contig10:674469..6748631680789333.9552794-CDS-P-littoralis_Contig10:674469..674863Pylaiella littoralis U1_48CDSP-littoralis_Contig10 674470..674863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.185.3

>prot_P-littoralis_Contig10.185.3 ID=prot_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=473bp
MNEPFSVIKLAPAARNVNVGLICSRLRRTTDREAIADAMTEVAALPCSPE
GLLLRSSVAAGGGLESVKTALLAAHGDVRLQCKAANALASLCMSEEVARG
FSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEGTALHEIVP
FVTQLMVKYTITDDEVFIREERQRSERGSWRRNRISKAGDNRGGGGGGGV
GRSSGGSKESNQDEADQEQARERMDTIRVYTLIFLLKASHTDPSTMPAMV
EAGAIPGLLRHLASAREESPYSQQQRQWQQQQQQENPAVHEGFHTRQKGR
IFGGHRHRTDEDLDHEQKDQSSPSFLLAARLLYAFSVDSSVRKSLLEAKC
LPPLIRIRRRLQAAEAAAAAAGTAAGSTVEPELACIGTKDLEGKTALLAG
KGALAVEEEGADLGNQTAHPSSRCTAAGNENSSCSERGVKQMDGESGQPP
LEAMVGFLVDQLVGRASPASGH*
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mRNA from alignment at P-littoralis_Contig10:670818..675159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.185.3 ID=mRNA_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4342bp|location=Sequence derived from alignment at P-littoralis_Contig10:670818..675159+ (Pylaiella littoralis U1_48)
CATACACACACAGTGAGAGATATGGTAGAGTCTACCATCTTCACTCCGTA
TTGACCTTTAAAGCTCTGCGAATGAACGAACCATTCTCTGTCATCAAGTT
GGCCCCGGCGGCACGAAACGTTAACGTTGGGTTGATCTGTAGCAGATTAC
GACGAACAACTGACCGGGAGGCCATTGCGGACGCCATGACTGAAGTGGCT
GCACTCCCTTGCTCACCTGAGGGCTTACTGCTGAGGAGTAGCGTGGCCGC
AGGAGGGTGAGTCAACACGAACGAGAGGTCGTTGGTTGCCCGCGTGTTGG
CTGAGCCAACTGTTGTAGGGACAAGTGTCAGGACGGCCACTGTACGGTAC
TGAAGTACCATAGCTCTTAGACAGCATGACTGCAATGTCGTGCCGTTCTG
CCCAGCAGTCTTCGCGAACAACCCGTTCATTCTGCTGCAGTGCGCACCTC
AGGTCGAAGTTTTAGAAAGCGTGAATACGAACAGATCCCTTGTACACGAA
TGTGTTACCAAATTTTCACCCCCCTGAGAGTCACGTCCTTTGATCTTCCT
GTATTTGTATCGTGTGTTTGGCTCCTCGAAGGGGGCTCGAGTCCGTTAAG
ACTGCTCTCCTGGCAGCACACGGCGACGTTAGGCTGCAGTGCAAGGCTGC
CAACGCCCTCGCGTCCTTGTGCATGTCGGAGGAGGTCGCGAGAGGCTTCT
CGGCGGCTCCGAATAGCTCCGCTGTGGTTGACAGGTGACCCCCGAGCTAT
CGTTTTTTTTGCGTACAGTAGTGACTGCGTACACGGCGCGGCGGCAAGCG
ATGCTCTTGCTACAGATCTAGAACAATAGCAGCTTACCACCGCAGCCTTA
TTGACGCGTGGTGAAATACTGTAGCTGATGGGATTACAAGCCAGCGTTTC
AGTCTGTGTGTGGATTTTCCGGAGCCTTACTGCTGCGTACTAAGGCTCTT
TTTAATCAGGCCGCCTGATTTCATGGAAACGACTTTTTTTTCACGGAAAC
GCGAAATGGCCGACAATACCTAGGCTTTCTTCCCCCGAAACATGAAATTG
AGCGACGGCAAAATAACGTAAATATTCGATTTCACGGAAACAGGAATTTT
TCCAGCCATTTCCAGAAACGTACGCAACACACACCGAACCCGTCCTACAG
CAGCAACAACAGTGCAGAAAGCAAAATAAAGAGCAGGATACCCGAGACAA
TCACTCTGGCGAGCAAACCCACCCCTGATGTGCAAATTCCGGCAGGCGTG
GTGGGAGGTTGGTGAACGAAATTAGAGCAGTAGCGATGAGAAGGAACCGG
AATCCTTGGTTTCGCCGCTTGTCTGCCTCTTTTTCTTGCTCCGCCAATAC
ACACCCTGCTGGCAACCACTTTGAAGCCAGCACTCAAGCTGCGACGACCG
CGTAGCGCCAGCGTGGTCGAGGGCCACTATCATGTAGACGCCCGTTTCAA
AAGAATCAGGAGTTCGGAGGCCTTGTAGCTCTGATGCTGTCTGATGCCGT
CAAGTGAAGCTTGTGACTGCAACCAAAGAACACCACCACCACCAGCGCGA
TTTGGAGGCGTCTAACAGCACACACCATCTTCTTGCGACCCTCGGTGAGC
CTCACACGAGCTACCACAACCACGCAGCGGCAATAATACCGAGGGTCACT
ATCATGTAGACCTACGTTTCGAAAGAATAAGGACCCGGGAGGTCTTCGGT
CTCTGTTGCTGTCTGCTGTTGTGTAGTGATCTTTGCCTGATTTTACAGCA
GAAAAGCACCATGACCTACCTGTTCGATTAGGATGGAGGTGTTGTCAAGG
TTTGTGTTCCCTGAAAAAAAAACCGTTTCCAAGAAATCAGGCGTCGTGAT
TAAAAAGGGCCTAATCATGCGTGAAGAAGGAACTCAAATGTCAATCGTGG
TGTAGGCGATAGTGGTGTCTTCACGAATTACAAATACTGTTGTATCTCCC
TTGCAGCTTTTTACCAAGCAAGAGCAACACAAGGCGGTGGCATTCTTCGG
TCTATCAACGAGTTCGGAATCCGATCATCACCATCATATCTCTAAGAAAA
ATTTGTTCAGTAGAGGCGAGTTGATGACGTACTGCTCGAGCATTCCTCTC
AAATTTGTCATTTCGCTCACGAAGATTTGTATGAAGTCACTGCTGTTCCA
ATCTTCTCAGCTCGTCCGTACTGATGTCGAGCTCACCAGCCGCTGTTCTT
GCTGTTGGTCACCAACTGCTATCGTCACGGTAGGCTCGGTGACATGCTGC
GATCGCGCAGCCAGTGGGCCCAAGCAGATGCGGCGGGTTGCCTGGGGTGG
CTCATCGGCAACATCGAAGGCACCGCTCTGCACGAAATCGTGCCCTTTGT
GACGCAGCTAATGGTGAAGTATACCATAACTGACGACGAGGTGTTTATTC
GCGAGGAGAGGCAGCGAAGCGAGAGGGGATCGTGGCGTCGAAATCGCATC
AGTAAGGCAGGGGATAATCGAGGTGGTGGTGGTGGTGGTGGTGTTGGACG
CAGCAGTGGAGGCAGTAAAGAGAGCAATCAAGACGAGGCGGACCAGGAGC
AGGCGCGGGAGCGCATGGACACCATTCGAGTGTATACCCTCATATTTCTT
CTTAAGGTGAAACCTGAACCTGAACGAAATTAGTTCTCCTGGAGGAGTTC
GATTCAGGCAGATGCAAGAGGTAATTATGGTTGGTTCCCAGCAACGCGCT
GAACCTCTTTGCTCGTGGATCCTTGCTATGTTCTGTGCAGTAGTTTGGCG
TGGTCTAACGCACCCGGCGGCATCGCTCGACCTGCTGTACTACGGGTTTT
GGTCGTTAACATCGATCACACTGCTGCTTTTGTGCCGGAATTGCGTCGTC
CCTCCCGCCTGAAGTATACCCGCGGTGCGTTCTCTTCTTCTTGCTTCTAT
TCGCTATTCGAATCGAACTACAAGGCCTCGCACACGGATCCTTCGACAAT
GCCTGCCATGGTGGAAGCGGGGGCGATCCCGGGGCTGTTGAGACACCTCG
CGAGTGCTCGGGAAGAATCCCCCTACTCACAGCAGCAGCGGCAGTGGCAG
CAGCAGCAGCAGCAAGAAAACCCTGCGGTGCACGAAGGTTTCCATACACG
TCAGAAAGGGCGGATATTCGGGGGGCACCGTCACCGAACAGACGAAGATT
TGGACCACGAGCAGAAAGACCAGTCGTCCCCGTCGTTCTTGCTGGCAGCG
CGGCTGCTGTACGCTTTCTCGGTGGACTCGAGCGTCAGGTGCTTTTGATA
GCGATCAGTAGCAGCAGCAGCAGCGATGAAACTATTTCTCAAGCCAGATG
TTGTTGCGCACAGCCTTCCCTTTGTTTCTGTGACCGAACGGGGCTCTTTC
CACGCTTCAAACTATACCGGGCTCCTACCAAAAATGTAAGTCGAGGGTCA
CACGCTGGCAGGGGTGATCTTGCAAGCTGAAATCTTGGAACGCAGTAAAG
CTTCAGCAGACAAAGGATGATCACACAAGTCGAAAGCTTGGAAGGGCAGT
AGAGCTTCAACAGAAAAAAATAATGCAAATAAATTGGCAATCTGAGGGCC
GGAAGGCCGCTTTTCGGAGGGTGCGCTGATTCACAAGTCTGAAGGTTGGA
CCGGCTGATCCTGCTGAAATTTCGTTATCGGTGGCGTCATTCTATTGAAC
AGGAAGTCTCTCCTGGAAGCCAAATGTCTGCCGCCGCTCATCCGCATCAG
GCGACGACTTCAGGCAGCAGAAGCAGCGGCAGCGGCAGCTGGCACCGCCG
CCGGCAGCACCGTCGAACCTGAGCTCGCATGTATCGGAACCAAAGATTTA
GAAGGCAAAACGGCTTTGCTGGCTGGCAAAGGGGCCTTAGCAGTAGAAGA
AGAGGGGGCTGATCTAGGAAACCAAACAGCACACCCAAGCAGCAGATGTA
CAGCTGCTGGGAATGAGAACAGCAGTTGTAGTGAGCGCGGTGTGAAGCAA
ATGGACGGGGAGAGTGGGCAACCTCCGCTGGAGGCAATGGTTGGCTTCCT
TGTAGATCAGTTGGTCGGTAGGGCATCTCCGGCGAGCGGTCACTGAATCG
TCGACTCAATATCATAGATTGTAGCGTGTCATCCCCAACTGCTGTGTCTG
TTTTCTGTGGACAAAGTGTGTAAACTTGCTGCGAAGCAACCAATGTAGAA
GAAGTTCAGCATACACCGTGAGCGGAGGGTCGTGGGAGCGTAGGAGCAAC
TCTCCTCTGATTAATCTACTACTTGTCTCCAATGATTTACAGCGAGAACG
CGCCACCGCATCGGCGTACAAGCATTTTTCCGTGTGGGCTCCAAGCCGCT
CGAGAATGTGGCAACCATGAGTTAATCGACATCATCTCTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:670818..675159+

>mRNA_P-littoralis_Contig10.185.3 ID=mRNA_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1419bp|location=Sequence derived from alignment at P-littoralis_Contig10:670818..675159+ (Pylaiella littoralis U1_48)
ATGAACGAACCATTCTCTGTCATCAAGTTGGCCCCGGCGGCACGAAACGT
TAACGTTGGGTTGATCTGTAGCAGATTACGACGAACAACTGACCGGGAGG
CCATTGCGGACGCCATGACTGAAGTGGCTGCACTCCCTTGCTCACCTGAG
GGCTTACTGCTGAGGAGTAGCGTGGCCGCAGGAGGGGGGCTCGAGTCCGT
TAAGACTGCTCTCCTGGCAGCACACGGCGACGTTAGGCTGCAGTGCAAGG
CTGCCAACGCCCTCGCGTCCTTGTGCATGTCGGAGGAGGTCGCGAGAGGC
TTCTCGGCGGCTCCGAATAGCTCCGCTGTGGTTGACAGGCTCGGTGACAT
GCTGCGATCGCGCAGCCAGTGGGCCCAAGCAGATGCGGCGGGTTGCCTGG
GGTGGCTCATCGGCAACATCGAAGGCACCGCTCTGCACGAAATCGTGCCC
TTTGTGACGCAGCTAATGGTGAAGTATACCATAACTGACGACGAGGTGTT
TATTCGCGAGGAGAGGCAGCGAAGCGAGAGGGGATCGTGGCGTCGAAATC
GCATCAGTAAGGCAGGGGATAATCGAGGTGGTGGTGGTGGTGGTGGTGTT
GGACGCAGCAGTGGAGGCAGTAAAGAGAGCAATCAAGACGAGGCGGACCA
GGAGCAGGCGCGGGAGCGCATGGACACCATTCGAGTGTATACCCTCATAT
TTCTTCTTAAGGCCTCGCACACGGATCCTTCGACAATGCCTGCCATGGTG
GAAGCGGGGGCGATCCCGGGGCTGTTGAGACACCTCGCGAGTGCTCGGGA
AGAATCCCCCTACTCACAGCAGCAGCGGCAGTGGCAGCAGCAGCAGCAGC
AAGAAAACCCTGCGGTGCACGAAGGTTTCCATACACGTCAGAAAGGGCGG
ATATTCGGGGGGCACCGTCACCGAACAGACGAAGATTTGGACCACGAGCA
GAAAGACCAGTCGTCCCCGTCGTTCTTGCTGGCAGCGCGGCTGCTGTACG
CTTTCTCGGTGGACTCGAGCGTCAGGAAGTCTCTCCTGGAAGCCAAATGT
CTGCCGCCGCTCATCCGCATCAGGCGACGACTTCAGGCAGCAGAAGCAGC
GGCAGCGGCAGCTGGCACCGCCGCCGGCAGCACCGTCGAACCTGAGCTCG
CATGTATCGGAACCAAAGATTTAGAAGGCAAAACGGCTTTGCTGGCTGGC
AAAGGGGCCTTAGCAGTAGAAGAAGAGGGGGCTGATCTAGGAAACCAAAC
AGCACACCCAAGCAGCAGATGTACAGCTGCTGGGAATGAGAACAGCAGTT
GTAGTGAGCGCGGTGTGAAGCAAATGGACGGGGAGAGTGGGCAACCTCCG
CTGGAGGCAATGGTTGGCTTCCTTGTAGATCAGTTGGTCGGTAGGGCATC
TCCGGCGAGCGGTCACTGA
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