mRNA_P-littoralis_Contig122.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.39.1
Unique NamemRNA_P-littoralis_Contig122.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Match: A0A6H5KF00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF00_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.500e-53
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   22 VQLCGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDP 309
            VQLCGAVR KI+GHDW AGPLRLVMSGEGL  SAAKY KGLLNPPTEERARLPRQ+NGRVANDG AWLVPAGLVLAGDG LQ VTWETY+WR GDP
Sbjct:   43 VQLCGAVRAKINGHDWTAGPLRLVMSGEGLLDSAAKYDKGLLNPPTEERARLPRQENGRVANDGRAWLVPAGLVLAGDGTLQIVTWETYIWRTGDP 138
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BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Match: A0A6H5K367_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K367_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.530e-37
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   28 LCGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDP 309
            LCG+VR K++ HDW +G LRL++SGEGL ASA KY +GL  PPT  RAR PRQ NGRVANDGPAW VPAGLVL G  A+  V  ETYVWR GDP
Sbjct:   47 LCGSVRAKVNRHDWGSGALRLLISGEGLSASAHKYARGLQQPPTAVRAREPRQVNGRVANDGPAWNVPAGLVLVGVDAINEVGTETYVWRTGDP 140
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BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Match: A0A6H5KLA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.810e-34
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:   25 QLCGAVRLKIDGHDWAAGP-LRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWET 285
            QLCGA R KI+ HD+     LRL++SGEG + SAAKYG GL+NPPTEERA+ PRQK GRVANDGPAWLVPAGLVLAG GAL+ VTWET
Sbjct:  195 QLCGAYRKKINEHDFGDRRFLRLMISGEGGWQSAAKYGTGLINPPTEERAKKPRQKYGRVANDGPAWLVPAGLVLAGGGALKTVTWET 282
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BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Match: A0A6H5K9F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9F7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.900e-31
Identity = 60/93 (64.52%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   31 CGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDP 309
            CG+VR K++ H+W  G LRL++SGE L ASA KY KGL  PP   RAR P Q NGRVANDGPAW VPAGLVL G  A+  V  ETYVWR GDP
Sbjct:  199 CGSVRAKVNRHEWDNGALRLLISGERLSASALKYTKGLQKPPIAARARRPHQLNGRVANDGPAWNVPAGLVLVGADAIDTVGSETYVWRMGDP 291
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BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Match: D7FV88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV88_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.660e-12
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  184 QKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDP 309
            Q NGRVANDGPAW +PAGLVLAG  A+  VT ETYVWR GDP
Sbjct:  148 QVNGRVANDGPAWNIPAGLVLAGAEAIDTVTSETYVWRTGDP 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KF00_9PHAE5.500e-5387.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K367_9PHAE8.530e-3768.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA4_9PHAE1.810e-3473.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9F7_9PHAE2.900e-3164.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV88_ECTSI4.660e-1276.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:131359..131667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size310
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789526.5373745-CDS-P-littoralis_Contig122:131358..1316671680789526.5373745-CDS-P-littoralis_Contig122:131358..131667Pylaiella littoralis U1_48CDSP-littoralis_Contig122 131359..131667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.39.1prot_P-littoralis_Contig122.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 131359..131667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.39.1

>prot_P-littoralis_Contig122.39.1 ID=prot_P-littoralis_Contig122.39.1|Name=mRNA_P-littoralis_Contig122.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MVYSRHAVQLCGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLN
PPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRR
GDP
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mRNA from alignment at P-littoralis_Contig122:131359..131667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.39.1 ID=mRNA_P-littoralis_Contig122.39.1|Name=mRNA_P-littoralis_Contig122.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig122:131359..131667+ (Pylaiella littoralis U1_48)
ATGGTGTACTCGCGGCATGCGGTGCAGCTGTGCGGTGCCGTCCGGTTGAA
GATCGATGGACATGATTGGGCAGCTGGTCCGCTGCGACTAGTGATGTCCG
GCGAGGGTCTGTTTGCTTCGGCGGCGAAGTACGGCAAGGGTCTGCTCAAC
CCACCGACCGAGGAGAGAGCCAGACTGCCTCGCCAGAAGAACGGGCGTGT
CGCAAACGACGGACCCGCATGGTTGGTACCGGCGGGGCTGGTCTTGGCGG
GTGATGGCGCCCTCCAGGCCGTGACATGGGAGACATACGTATGGCGGAGA
GGTGACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:131359..131667+

>mRNA_P-littoralis_Contig122.39.1 ID=mRNA_P-littoralis_Contig122.39.1|Name=mRNA_P-littoralis_Contig122.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig122:131359..131667+ (Pylaiella littoralis U1_48)
ATGGTGTACTCGCGGCATGCGGTGCAGCTGTGCGGTGCCGTCCGGTTGAA
GATCGATGGACATGATTGGGCAGCTGGTCCGCTGCGACTAGTGATGTCCG
GCGAGGGTCTGTTTGCTTCGGCGGCGAAGTACGGCAAGGGTCTGCTCAAC
CCACCGACCGAGGAGAGAGCCAGACTGCCTCGCCAGAAGAACGGGCGTGT
CGCAAACGACGGACCCGCATGGTTGGTACCGGCGGGGCTGGTCTTGGCGG
GTGATGGCGCCCTCCAGGCCGTGACATGGGAGACATACGTATGGCGGAGA
GGTGACCCG
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