mRNA_P-littoralis_Contig122.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.33.1
Unique NamemRNA_P-littoralis_Contig122.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.660e-88
Identity = 168/281 (59.79%), Postives = 187/281 (66.55%), Query Frame = 1
Query:  241 PPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAGGGDAKVWRKKDFLVDALLSIVGGSSEDGEGGRVDSGSGNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSAVGETKG 1083
            PPFE  PEI+D+IYKFVLQKFH+ R                                                        GVVAGSGTVT+EGL VE  RKMTK QLF LTKGTLVD IKA GGDAKVWRKK+FLV+ALLS+ GGSSEDGEGG VD GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL R ID +EVF SSPKSNLA A G TR ELSF  SDVAGETA S +GETKG
Sbjct:  266 PPFEAQPEILDDIYKFVLQKFHSFR--------------------------------------------------------GVVAGSGTVTNEGLAVETVRKMTKPQLFELTKGTLVDHIKAAGGDAKVWRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.480e-44
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 1
Query:  184 QSRQRYGRHGLNAALPPLTPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQL 564
            + R+ + +   +A  PP   PFE  PEI+D+IYKFVLQKFHNVRMGDF+RRLS+NSTLRLSKGELALRQ LRATSAKG ATAKG APVGGG DGT +LAGGV+AGSGTVT+EGL VE  RKMTK QL
Sbjct:  257 EVRRAWAKCCPSAVAPP---PFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5JA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA88_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.300e-24
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPP 245
            +V  VD R D  NGAGLLF +L +Y FV   ENG YH L  PY+LG YLGDLPA  LRVV+ES EV+ AWAKCCPAAV+PP
Sbjct:  164 LVAGVDKRIDLKNGAGLLFVSLDFYNFVLMLENGYYHVLHQPYYLGPYLGDLPAGPLRVVSESEEVKDAWAKCCPAAVEPP 244          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.770e-20
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 3
Query:    3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
            +  +VD++ND  NG+GLL+PT+ W EF +  E GI+HFL+ P FL A LGDLPAEI++VV+E+  V++ W  CCP    A+DP V
Sbjct:   65 LAAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVKEMWGNCCPPGPPAIDPSV 149          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.120e-19
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 3
Query:    3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 227
            +VGEV  RND +NGAGLLF T A++EF + +E G +H L  P+ LGAYL  LP ++LRVV+E++E+R AWA+CCP
Sbjct:  196 LVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCP 270          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.360e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:    3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 227
            +VGEV  R+D +NGAGLLF T  ++EF +  E G +H L  P+ LGAYLGDLP E LRVV E++ VR AWA+CCP
Sbjct:  254 LVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCP 328          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.790e-19
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    6 VGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
            V  VD +ND  NG GLL+PT+ W EFV+  E GI+HFL+NP FL A LG LPAEI +VV+E+  V++ W  CCP    A+DP V
Sbjct:  236 VAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNCCPPGPPAIDPSV 319          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-12
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   12 EVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA 230
            EV  RNDP    GL+F T  + + +   E+G +H L  P FLG+YLG+LP EILR+V+ES  V++AW  CC A
Sbjct:  266 EVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQA 338          
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.540e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   84 VFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
            V+  E GI+HFL NP FL A LG+LPAEI +VV+ES  V++ W  CCP    A+DP V
Sbjct:   44 VYVVERGIFHFLENPIFLAACLGELPAEIFKVVSESEVVKEMWGNCCPPGPPAIDPSV 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE1.660e-8859.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE4.480e-4473.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA88_9PHAE4.300e-2465.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE2.770e-2051.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI1.120e-1957.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM7_ECTSI4.360e-1958.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K201_9PHAE8.790e-1954.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE4.500e-1249.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3B5_9PHAE4.540e-1055.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:121046..122328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1283
Hectar predicted targeting categoryother localisation
Exons1
Cds size771
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789526.3238769-UTR-P-littoralis_Contig122:121045..1212421680789526.3238769-UTR-P-littoralis_Contig122:121045..121242Pylaiella littoralis U1_48UTRP-littoralis_Contig122 121046..121242 -
1680789526.3428144-UTR-P-littoralis_Contig122:122013..1223281680789526.3428144-UTR-P-littoralis_Contig122:122013..122328Pylaiella littoralis U1_48UTRP-littoralis_Contig122 122014..122328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789526.3333406-CDS-P-littoralis_Contig122:121242..1220131680789526.3333406-CDS-P-littoralis_Contig122:121242..122013Pylaiella littoralis U1_48CDSP-littoralis_Contig122 121243..122013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.33.1prot_P-littoralis_Contig122.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 121243..122013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.33.1

>prot_P-littoralis_Contig122.33.1 ID=prot_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp
MGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDG
TDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAGGG
DAKVWRKKDFLVDALLSIVGGSSEDGEGGRVDSGSGNGRVDVVGSGSVGE
ISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGD
FDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSA
VGETKG*
back to top

mRNA from alignment at P-littoralis_Contig122:121046..122328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.33.1 ID=mRNA_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1283bp|location=Sequence derived from alignment at P-littoralis_Contig122:121046..122328- (Pylaiella littoralis U1_48)
ATATGGTTGGGGAGGTCGACGCGAGGAATGACCCCGTTAACGGTGCGGGT CTCCTCTTTCCTACTCTGGCGTGGTATGAATTCGTATTCCACGCCGAGAA CGGGATATACCATTTTCTGCGTAACCCATACTTTCTAGGTGCTTATCTAG GGGACTTACCGGCTGAGATCTTGAGGGTAGTGACAGAGTCGTCAGAGGTA CGGAAGGCATGGGCTAAATGCTGCCCTGCCGCCGTTGACCCCCCCGTTCG AAGAGCATCCAGAGATTATCGACAACATTTACAAATTTGTCTTGCAGAAG TTTCACAACGTCCGTATGGGGGATTTCTCGCGCCGATTGAGTGAGAACTC CACGCTCAGGCTGTCGAAGGGCGAGTTAGCCCTGAGACAACAGCTAAGAG CCACCAGTGCGAAGGGGGCGGCCACAGCGAAGGGGGCGGCTCCAGTTGGT GGGGGGACTGATGGAACGGACCAGTTGGCGGGTGGTGTCGTGGCAGGCTC GGGTACTGTGACGAGTGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGA CCAAGTCACAGTTGTTCGCACTGACCAAGGGCACACTAGTGGACCTTATA AAAGCTGGGGGTGGCGACGCCAAGGTGTGGAGAAAGAAGGATTTTTTGGT CGACGCTTTGCTTAGCATTGTCGGCGGCTCTAGCGAAGACGGCGAAGGAG GGCGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGC GGCAGTGTTGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGC GGGCGGCGAAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAGGATGCCG AGGTGTCGAAGCTGCTGCAAGAATTGGCTCTGGGGGGTGGGGAAGATGAC GCGTCTCTCGGAGACTTCGACGAAGATTTTTTGGGTCGACCTATCGATCT TGAGGAGGTATTTTCGTCCTCGCCGAAATCGAACCTGGCGGGTGCCCACG GTTCAACGAGGAAAGAGTTATCCTTTGGCCACTCTGATGTTGCGGGAGAG ACAGCAGACTCTGCGGTGGGTGAAACCAAGGGATGAGGGTCAGGGTTTTC AGCCTTGCTGGTTTCGAATATCGTCTGCTTGTATCTGTGGTGCGGGATTG TTTGTGTCTGGGTGACAAACTTGAAAGACTGTATGGTGTTCTGACGGTCA TCCCCGGGGTCTTCTTGTCAATTTATACGAGTTATTCGATGGAGTGCAGT GTTGCACATACTTGCCGTTTGTGCCACAAGATA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig122:121046..122328-

>mRNA_P-littoralis_Contig122.33.1 ID=mRNA_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig122:121046..122328- (Pylaiella littoralis U1_48)
ATGGGGGATTTCTCGCGCCGATTGAGTGAGAACTCCACGCTCAGGCTGTC
GAAGGGCGAGTTAGCCCTGAGACAACAGCTAAGAGCCACCAGTGCGAAGG
GGGCGGCCACAGCGAAGGGGGCGGCTCCAGTTGGTGGGGGGACTGATGGA
ACGGACCAGTTGGCGGGTGGTGTCGTGGCAGGCTCGGGTACTGTGACGAG
TGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGACCAAGTCACAGTTGT
TCGCACTGACCAAGGGCACACTAGTGGACCTTATAAAAGCTGGGGGTGGC
GACGCCAAGGTGTGGAGAAAGAAGGATTTTTTGGTCGACGCTTTGCTTAG
CATTGTCGGCGGCTCTAGCGAAGACGGCGAAGGAGGGCGGGTAGATAGTG
GGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGTTGGCGAA
ATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCT
TGAATGGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGC
TGCAAGAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCTCGGAGAC
TTCGACGAAGATTTTTTGGGTCGACCTATCGATCTTGAGGAGGTATTTTC
GTCCTCGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACGAGGAAAG
AGTTATCCTTTGGCCACTCTGATGTTGCGGGAGAGACAGCAGACTCTGCG
GTGGGTGAAACCAAGGGATGA
back to top