mRNA_P-littoralis_Contig122.33.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE) HSP 1 Score: 286 bits (732), Expect = 1.660e-88 Identity = 168/281 (59.79%), Postives = 187/281 (66.55%), Query Frame = 1
Query: 241 PPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAGGGDAKVWRKKDFLVDALLSIVGGSSEDGEGGRVDSGSGNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSAVGETKG 1083
PPFE PEI+D+IYKFVLQKFH+ R GVVAGSGTVT+EGL VE RKMTK QLF LTKGTLVD IKA GGDAKVWRKK+FLV+ALLS+ GGSSEDGEGG VD GSGNG V+V G G G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+ GEDDASLGDFDE+FL R ID +EVF SSPKSNLA A G TR ELSF SDVAGETA S +GETKG
Sbjct: 266 PPFEAQPEILDDIYKFVLQKFHSFR--------------------------------------------------------GVVAGSGTVTNEGLAVETVRKMTKPQLFELTKGTLVDHIKAAGGDAKVWRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.480e-44 Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 1
Query: 184 QSRQRYGRHGLNAALPPLTPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQL 564
+ R+ + + +A PP PFE PEI+D+IYKFVLQKFHNVRMGDF+RRLS+NSTLRLSKGELALRQ LRATSAKG ATAKG APVGGG DGT +LAGGV+AGSGTVT+EGL VE RKMTK QL
Sbjct: 257 EVRRAWAKCCPSAVAPP---PFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5JA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA88_9PHAE) HSP 1 Score: 110 bits (275), Expect = 4.300e-24 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 3
Query: 3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPP 245
+V VD R D NGAGLLF +L +Y FV ENG YH L PY+LG YLGDLPA LRVV+ES EV+ AWAKCCPAAV+PP
Sbjct: 164 LVAGVDKRIDLKNGAGLLFVSLDFYNFVLMLENGYYHVLHQPYYLGPYLGDLPAGPLRVVSESEEVKDAWAKCCPAAVEPP 244
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.770e-20 Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 3
Query: 3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
+ +VD++ND NG+GLL+PT+ W EF + E GI+HFL+ P FL A LGDLPAEI++VV+E+ V++ W CCP A+DP V
Sbjct: 65 LAAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVKEMWGNCCPPGPPAIDPSV 149
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.120e-19 Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 3
Query: 3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 227
+VGEV RND +NGAGLLF T A++EF + +E G +H L P+ LGAYL LP ++LRVV+E++E+R AWA+CCP
Sbjct: 196 LVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCP 270
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 4.360e-19 Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query: 3 MVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 227
+VGEV R+D +NGAGLLF T ++EF + E G +H L P+ LGAYLGDLP E LRVV E++ VR AWA+CCP
Sbjct: 254 LVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCP 328
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 8.790e-19 Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 3
Query: 6 VGEVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
V VD +ND NG GLL+PT+ W EFV+ E GI+HFL+NP FL A LG LPAEI +VV+E+ V++ W CCP A+DP V
Sbjct: 236 VAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNCCPPGPPAIDPSV 319
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 4.500e-12 Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query: 12 EVDARNDPVNGAGLLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA 230
EV RNDP GL+F T + + + E+G +H L P FLG+YLG+LP EILR+V+ES V++AW CC A
Sbjct: 266 EVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQA 338
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 4.540e-10 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 3
Query: 84 VFHAENGIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDPPV 248
V+ E GI+HFL NP FL A LG+LPAEI +VV+ES V++ W CCP A+DP V
Sbjct: 44 VYVVERGIFHFLENPIFLAACLGELPAEIFKVVSESEVVKEMWGNCCPPGPPAIDPSV 101 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.33.1 >prot_P-littoralis_Contig122.33.1 ID=prot_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp MGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGGGTDGback to top mRNA from alignment at P-littoralis_Contig122:121046..122328- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.33.1 ID=mRNA_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1283bp|location=Sequence derived from alignment at P-littoralis_Contig122:121046..122328- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:121046..122328- >mRNA_P-littoralis_Contig122.33.1 ID=mRNA_P-littoralis_Contig122.33.1|Name=mRNA_P-littoralis_Contig122.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig122:121046..122328- (Pylaiella littoralis U1_48)back to top |