mRNA_P-littoralis_Contig122.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.13.1
Unique NamemRNA_P-littoralis_Contig122.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:74400..75091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size692
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.0069847-UTR-P-littoralis_Contig122:74399..745991680789525.0069847-UTR-P-littoralis_Contig122:74399..74599Pylaiella littoralis U1_48UTRP-littoralis_Contig122 74400..74599 -
1680789525.0413415-UTR-P-littoralis_Contig122:74974..750911680789525.0413415-UTR-P-littoralis_Contig122:74974..75091Pylaiella littoralis U1_48UTRP-littoralis_Contig122 74975..75091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.025117-CDS-P-littoralis_Contig122:74599..749741680789525.025117-CDS-P-littoralis_Contig122:74599..74974Pylaiella littoralis U1_48CDSP-littoralis_Contig122 74600..74974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.13.1prot_P-littoralis_Contig122.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 74600..74974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.13.1

>prot_P-littoralis_Contig122.13.1 ID=prot_P-littoralis_Contig122.13.1|Name=mRNA_P-littoralis_Contig122.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MFSHVSSFGEISFGIACQSKHARVFGLCRTGVLEARCGWDLEGSLEMEAH
TMVRVGPSIIDTRGDGVIDRNTKWFIAASYTRVDDNTLAAIVLLGRHRYR
GTRVERRSRYCVEIEGTAVRDAVF*
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mRNA from alignment at P-littoralis_Contig122:74400..75091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.13.1 ID=mRNA_P-littoralis_Contig122.13.1|Name=mRNA_P-littoralis_Contig122.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=692bp|location=Sequence derived from alignment at P-littoralis_Contig122:74400..75091- (Pylaiella littoralis U1_48)
GGGGCCGTTGTTGAAGTCGTTTGAGGCTGTGGGTTGATGTGATGTTTGCT
GACTTTGGTCTTTAGATATTTGCGTTGCGCGTGTGGGTGTCGTGTGTTGC
TTTTACCCAGCATCGTGATGTTCTCGCACGTGAGCAGTTTCGGCGAGATC
TCTTTTGGCATTGCTTGTCAAAGCAAGCACGCGCGGGTTTTCGGTTTATG
CCGCACCGGTGTTTTGGAGGCGAGGTGTGGGTGGGATTTAGAGGGGTCGT
TGGAAATGGAAGCGCACACCATGGTACGCGTGGGCCCTTCGATCATTGAT
ACTAGAGGAGATGGCGTTATAGACCGTAACACCAAATGGTTCATTGCCGC
GAGCTACACAAGAGTGGACGACAACACACTCGCTGCGATTGTTTTGCTGG
GTCGACACAGATACAGAGGAACCAGGGTCGAGAGACGAAGCAGATATTGC
GTAGAGATTGAAGGCACTGCTGTGCGTGATGCTGTATTTTAGAGTGTGTG
GTACACTCGCCCGATAGAACAAGATAAGACGTTACTCTGTTGGCTGTTGG
ATAGAGGAGGACGGGGAGGAAGGGGAAGATAATACAGATAGAAAATAAAA
GAGAAGAAAATAGATGATAGGAAGTGCCAACCGTATTTGCAAATTGTATA
CCACCGTCCGTTCACGAAACGCGGGAACACACCGGTCATGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:74400..75091-

>mRNA_P-littoralis_Contig122.13.1 ID=mRNA_P-littoralis_Contig122.13.1|Name=mRNA_P-littoralis_Contig122.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig122:74400..75091- (Pylaiella littoralis U1_48)
ATGTTCTCGCACGTGAGCAGTTTCGGCGAGATCTCTTTTGGCATTGCTTG
TCAAAGCAAGCACGCGCGGGTTTTCGGTTTATGCCGCACCGGTGTTTTGG
AGGCGAGGTGTGGGTGGGATTTAGAGGGGTCGTTGGAAATGGAAGCGCAC
ACCATGGTACGCGTGGGCCCTTCGATCATTGATACTAGAGGAGATGGCGT
TATAGACCGTAACACCAAATGGTTCATTGCCGCGAGCTACACAAGAGTGG
ACGACAACACACTCGCTGCGATTGTTTTGCTGGGTCGACACAGATACAGA
GGAACCAGGGTCGAGAGACGAAGCAGATATTGCGTAGAGATTGAAGGCAC
TGCTGTGCGTGATGCTGTATTTTAG
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