mRNA_P-littoralis_Contig94.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig94.128.1
Unique NamemRNA_P-littoralis_Contig94.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig94.128.1 vs. uniprot
Match: A0A6H5J7J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.620e-9
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 EAIPLLKRALSIRTKKLGEDHPYTVGTRNRLEVVRKE 111
            +A+PLL+RALSIR KKLGE+HP TV T+N L+VVR++
Sbjct:    6 DAVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRRK 42
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BLAST of mRNA_P-littoralis_Contig94.128.1 vs. uniprot
Match: D8LKS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS1_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.380e-6
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 EAIPLLKRALSIRTKKLGEDHPYTVGTRNRLEVVRKEV 114
            EA+PLL+RA SIR KKLGE+H YTV T+  LE V+K V
Sbjct:   24 EALPLLERASSIRGKKLGENHHYTVDTQISLERVQKHV 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7J8_9PHAE3.620e-967.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS1_ECTSI2.380e-665.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig94contigP-littoralis_Contig94:579369..579482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G180
PFAMsTPR_10,TPR_12
Model size114
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000147
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size114
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791855.370132-CDS-P-littoralis_Contig94:579368..5794821680791855.370132-CDS-P-littoralis_Contig94:579368..579482Pylaiella littoralis U1_48CDSP-littoralis_Contig94 579369..579482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig94.128.1prot_P-littoralis_Contig94.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig94 579369..579482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig94.128.1

>prot_P-littoralis_Contig94.128.1 ID=prot_P-littoralis_Contig94.128.1|Name=mRNA_P-littoralis_Contig94.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
EAIPLLKRALSIRTKKLGEDHPYTVGTRNRLEVVRKEV
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mRNA from alignment at P-littoralis_Contig94:579369..579482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig94.128.1 ID=mRNA_P-littoralis_Contig94.128.1|Name=mRNA_P-littoralis_Contig94.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig94:579369..579482- (Pylaiella littoralis U1_48)
GAGGCAATTCCACTATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGCT
TGGGGAAGACCATCCTTACACGGTCGGCACTCGGAACAGGCTGGAAGTTG
TGCGAAAAGAGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig94:579369..579482-

>mRNA_P-littoralis_Contig94.128.1 ID=mRNA_P-littoralis_Contig94.128.1|Name=mRNA_P-littoralis_Contig94.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig94:579369..579482- (Pylaiella littoralis U1_48)
GAGGCAATTCCACTATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGCT
TGGGGAAGACCATCCTTACACGGTCGGCACTCGGAACAGGCTGGAAGTTG
TGCGAAAAGAGGTT
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