mRNA_P-littoralis_Contig122.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.21.1
Unique NamemRNA_P-littoralis_Contig122.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:94285..100213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size688
Hectar predicted targeting categorysignal peptide
Exons2
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.6152527-CDS-P-littoralis_Contig122:94284..946391680789524.6152527-CDS-P-littoralis_Contig122:94284..94639Pylaiella littoralis U1_48CDSP-littoralis_Contig122 94285..94639 -
1680789524.6281419-CDS-P-littoralis_Contig122:99881..1000631680789524.6281419-CDS-P-littoralis_Contig122:99881..100063Pylaiella littoralis U1_48CDSP-littoralis_Contig122 99882..100063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.642084-UTR-P-littoralis_Contig122:100063..1002131680789524.642084-UTR-P-littoralis_Contig122:100063..100213Pylaiella littoralis U1_48UTRP-littoralis_Contig122 100064..100213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.21.1prot_P-littoralis_Contig122.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 94285..100063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.21.1

>prot_P-littoralis_Contig122.21.1 ID=prot_P-littoralis_Contig122.21.1|Name=mRNA_P-littoralis_Contig122.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
MKVSSRSSKRLNSLLALVSVSAVMVTPDVAAAAAAPAAATVSPTSASCSA
GTNEPTIATCRPAAVASSASAGTAFASAVGSTLIHHGGGLHQQQQQQQQQ
QRQRRQWRRRRQTHRHDHHQPLRMFLSPAPSCLGRPLRLGDSPLFLAGAP
ATTITTAAAVLVPPSVRMRPTMQAPLSGG
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mRNA from alignment at P-littoralis_Contig122:94285..100213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.21.1 ID=mRNA_P-littoralis_Contig122.21.1|Name=mRNA_P-littoralis_Contig122.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5929bp|location=Sequence derived from alignment at P-littoralis_Contig122:94285..100213- (Pylaiella littoralis U1_48)
CATCAACACATCAGCTATACTTGCAGTACACAGAGGGAGCGATTATTGAC
TGACGAGGAGACCGAACACGGGCGTGACGCAGTATTGTAGTGTACAGTAG
TGCTTCTGTCGTGTGCAGCGGCGATCACCGCACCTACTGCTCTGGTGACA
ATGAAAGTCTCATCAAGAAGCAGCAAGCGGTTGAACTCGCTCTTGGCGCT
TGTCTCGGTGTCGGCAGTGATGGTGACGCCCGATGTTGCTGCCGCCGCCG
CCGCCCCGGCCGCCGCAACCGTCAGTCCGACTTCTGCGTCCTGCTCAGCT
GGCACCAACGAGCCTACTATCGCTACGTGCAGGTAAAATTGCTGCTGCTG
CTGTGTGAAACCACCTACACCCAGAACTTTGTTCAATAACTCGGTATTTG
TTTGTGCCAGAATACAATGAGAAGTGCATACGTACATACAACCTCCGCAG
CAGGTAGGATGGCTGTTCATTCCATGCGAAACTCCCACAGAAGAGAGATG
GAAGACGGAGAGATGGACAGGCCATCCACCTGAGGATTATCATACGTGTC
TGCCGCTCAAGGTCTAGAATGTTTGATGGAGCTGGTTTTTTGTCAGTCCG
ATTGCTGGTCAGGTCGCCGCGCGTGGTGTGCCTCTTCAGCCTCCCTTTCA
GTTCAAACAGCAACTGAGAACTGCAACCTTGAAAAGCTTCACACTTCCGT
GCATCCTCGGGGCACCGGTATAATAATGCACGCCAAACGCGGTGTGCTTG
TTGGTTAGACCAACTTCCACCCCCTCCCCACAACACCCCTTCCTCCGTCC
CAGCCGCGAGCTTCCTGCCACAGCCCAACAGTATATTTCAACAAAGATGA
GGTACTATTGGGCAATCGGGTGTCGGGAAACGAGCTTCAACGTACTTTTA
AGGGACTACTCCCGTACTCGCTGCGGAAGGTTCGAAGCCGTATGATATGA
AATCGAAACCGCTGTACTGTACCGGATTGCATCCGTACATTATTGTATCT
CTACGATTGCCGGTATCGGGAACGTTACAGAATTTCACACTTCCTCTCGC
CATCATATAGACGTTGAACCTTGTGAGAGCCTTAAGGCCGGCTCTGATTT
AATGGGGGCTGCTTCACAATAATTAAATTATTTCGGACGAAGAGGGGAAA
AAACGACTTAGTTCGCTCGAAGAGGGAAGAAAAGTTCGAGGAGGCGTGCG
CACTGATCGACAACAAACTATACCGCAGCAGCGGCAGCCTAGCAGACTGC
TGTGTGCACATCCATATGATATGCATTCGATAGGTGGTACGGATGTATAC
AGTACTGCTTGACATCAGCCCATCATACAATTTTATGAGAAGACGTGAAA
GTGGGTGATCTGTCTGTTGTGCGTGTGGCGTGTAAAATGCGTGAATCCAT
CGCACTCTTTCAGGAGCTATCTCCAGCCGTAGTGTCGAATCAAAGCTGGC
GATCAATGCAGTACAGCAGTAGTACACAAACAACGGAGACGTGCACTGCT
GTTTACACTCTCTCTGTACAACATGCATGCGTTCCCATGCGTGTGTGGTG
GATGGTGAGTCATCATGCGATGGGTTCTGCAACCAATGACAGCAGCAGTA
GCAGCAGCAGTACTGCGCTGTGCTGTGTAGACAGGCAGAGGAGAGGGATA
GCGGTGCTGTTGTGCTGGTGACCAGCCTGTTGTTCTGTGACTCACGGGCT
CAGGTGATAATCTACCAACACGAGACATCAAGACAGAAGGAGGGACCCTC
GCGCGTAGTCAGACATTGCGACCACTCTCTCCGCGGACGCGCGGGTGCTT
TGAGTGCTACTGCTGCTGCTGCTGCTGCTGCTGTGTTGAACTGCTGTGGG
CAATCTGTTGGGAAGTGTGGGAAGGACCAGGTTGGTCGTTGCAATTCAAA
AACGGAGAGCCATGATTGGCTTGCACTACAAAAACTGAGCCCTACCCAAA
AAACTCCCGCCTTAAGGCCACACTGCCTGTACTCCCCCTCCAGGGGACCC
GTGTTTGTATTTTTTAACACGGTATTTCGAAGATTTTTTTTTTCTTTCCC
CAATGGGTCAAGCTTCCAAATATAAAGCAGCAGTTGTGTGCCCCCGCTGA
CTGCTGTACGCTCCCCTCCCACGCCTACCCCATTCAGCCTTTGGAGGCAC
AAACCTCTAAAGGTTTTTTGAGATCTCACATCAGCTTGAACTCCTGTGTG
GATTAAAACTATGCCCGACCCCCGTATATGCCTTGTAGCTCGAGATCGAG
GTGCTCGGCATGATCGTTTTGAGCACCCTTTCGCCGAACGGGTTTTGGCG
AAAAACACCGCAGAAACTGTGCTTCAGTCACGGACATAGCCCGCTTGTCA
CAAGCAACCTCACTGCTTCAAATTGCCAGAGCCTACTGATGTGGTGCGTG
AGTGGCGTCTCATGCGTTTACAGCAGCAGCGCGCAGCCAGAAACTATTTC
AGAGGTACTGTGTGAACTACTTCTGGAGGCCTGCAGCAGCCCGAAATTGC
ACCAAAATGGGAGATCTGCGGGTGCGTTTGTGCGATGCCACCGTTCTTCG
CAGGTATAGCCCCCATCAACATGGAAATTGGACGCGAATGTAGCTGGCTT
ACCGGGCAATCTGAAAAGCCAATAACCTCCAGAGGTTCGGAATTGGGCGG
GGTTTATTTTTTCAATCTACGGCCCAAAAAGCTACTAGAAAGACGTTTTT
TAATGTAGTTTTTGGACTCCCTCCAAATAAAGCTACTTTTGTGCAAATCC
CTGACACCATATTCAAGTCGTTTGGTTCCCGGTTGCAAAATGCCACCTGC
CACTTCTTCACAAACCCGGTTTCTTATTATACTGAATACAGGGTGGCCTC
AAGAGAACCTTCTGTGTGTTGTTCCGCCCCCCCTCGCCGATTCGTGAAGT
TCGGGTAGACGTTGTTCGCAGAAGCCACATCGATGTTGATCTATATTCTT
AATTTTTTCTGCTCCCCCCCCCCTGCCCTCCCCCAACATTCAGCTCACCC
CGTTGCTTTACAAGCAGTAATATACCAAGAATTTTGTCTTGCGTGAGCAT
GTCATTATTCGAAGTACTGCTGTATAATGCAGAGGATTCGTTATGTCGAT
GTTGTGGAACAAAAGCCAGATCTTCATTTTTTCTGCCCCCCCCCCCCCCC
CCCCCCCCCAAACATTCAGCTCACCCCACAAAGCATCGTACAACCAAGCC
TTTTTGTCTTACGTGTGCGTACATTAAGCAGTAGTGGTGCACAGGGCCTC
CTCCTGTCAATACCGCTGTGGAACAAAATACACATGTTGATGTTGGTTTT
TTCGCCCTCCCCCAACATTCAGCTAACCGCGTACTTGTAGTAAAATCAAG
ACTTTTGTTGGCAGGACTGATGATCTCAATGTTGTGGAACATGGGGTTGT
GGGTCACATGATGGGACTCTCCGCTGGTGGCACAAATGCAAAAAAAACGC
AAGAAATACCAAACTCGGCGCATTGCCTTGCCAACCTGGCCGCTGGGCCG
CTGGCGGCCGCTCTTCAGGCGTGCGAATGAAATAGTTGCGCTTGGCCACA
GACCTGAGATGCCACCAGCGTGTCTTGACGCAAACGGAGCAAAACAGAGA
GCCTCTCAATCAACAGGCACCCGAAGGCGCCACATGCTTTCAATCATTGC
TCGATCCACCCGTATCAAGCGAAACCCTGGAAGAATGGAATCCCATAGGA
TCCCCATCCACTTCCCGCTGGCCCGCTGCCGACAGGGCGTTGGGCTGGTG
ATGGGGTCATTCAAGCATTGGTAGTATCATAGCAACGCGTTGTTTCGAGC
ATCTATCTGCGCTAGAAATCGTTTTCAAAGCGGCAGAAGACGTCGCCCAC
GATATTATCGAAAGGGAAAAAAAAAGAAAGTAGATTATGTGTCTGGTTAC
ATCAGTAGCAAGCTGCGCCCCGACCGACGCTGCATGGCCCTTTTGATTGA
ATCACCCCCACCGCAAACCCAACACCCTACCGACGGTAAGCAGTGAATGG
AGATCTATCCCATCATTTCAAGGTTTTAGCTTGCTCAAGCGAGCGAGTAA
GTGATTTGAGTGCGGTGTCCTCGGATGTCGGTCGAAAGGCTGTCTGCCTA
GCTCTGTACGCATCAAAACAGGCTGATGCATCTCCTGCTTCAACAGCCTG
TGGTGAAACAATACCTTTTTCGCACGCCTGAAGATACGCGACCGCCAGCG
GCCAGCGGCCAGCGGCCAGGTTGGCGAGTTAATGCACCTGATAAGCGCGC
CACGTTCGGTAATCCTTTTGCAAGCGGTCGGTCGTAATCGGTAATTGCGC
CGTCTGACCCCCCACTTCAAACCGAGATTCGTAGACAAGATTCGGCAAGG
CCATTCTTCGGGCTCTTGACCCCAAGATTCCCCGCAAAAATACTCCCTTT
TGCAATGTCGACTCAAACCTTGGCAAGATTTCCGGGTGAATATTTGGGCC
CCGTATCAAATGCGGTCAACAAAATCGAAGCTTCAAAGTTTGTTTAAATG
ATCCCGCCCCCCAAATATAGAACAGAAAGAGGAAGGTCAAGACTGAGATA
AGCACATGGCTTCCGTACGCGACGGCCTTTATTTGTTCCGAGACGAATAT
GATTCCAATGCTACAGCAGTTGCATGAGAGCAGACGATAAGTTCTTATAC
AGCTTTCCGTTAGATATTCCTACTTTGCCCTTCGGGCGCTCACACGTGCG
TGTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTCTTGTTGT
TGCTCTTGTTGTTGTCGTTGTTGTTGGTTTCGATATCCGCTCACCGCTAC
TGTTTCACCCGTGGTCACAAACCAGACACATGTGGTGCTGGGAGGGAAAA
AAAGCAGAAATGGAAATAAAAAAAAGAAGCTCATATCAGCAAAAAAGGGA
AAAGAAAAGACAGGCGTATACGAGTATTAACCGCGCATCCCAAGGGGTAT
CTTCCGAGGGATTACTTCTGCCGTTGCCATAGTACACAAAAAATACAGGT
GTACAGATTCAAAACAAAGAAAACGAAAATCAAAGCAAGTAACCGACAAT
CACCATGATCAGGCCCAAAAAGGGAAGTATCATTCCAAGGACAGAAGACG
CGAAACGAGATACACACAACCGCAGCACTTGTTAACGAAAGGGACAAAGG
GGATAGGAGACGAAAAATAATCAAAGAAAGAGGAGGGGGAGGAAAGGAGG
ATGAAAATGACGAATTATGCGAGAAAGAAAGGGAAATACGGGTACCGCAA
GTAGGTGGGTTTTAGACGGTATCAGTCACAAGCAAATGCTCGCCGCAAGG
TCTGCCTGGTCACAGTCACGCGCCTGCTCTTCTCCCACCCGCTCGTACCT
CCTGTCACTCGTTTCGGCTTCACCAACGACTACTATGCACAGGGACAAGC
ATCTTGTCGACCTTCGACTTGTCTTGACCCCACGAGCGAACGCTCTTCAT
CCATCCTTTCACGCTCTCTTCTCCTCCGCCACTTACAGCAGTAGTATCTT
CCCTGCCTGATCTCTTTTTCTCCGTGTGTCTTGGCTTGGCTTTGGCGTGA
CTACTGGGGGGGCGGGGGAAGAAGGCCGGCGGCAGTGGCATCATCAGCAT
CAGCAGGGACGGCTTTCGCGTCAGCGGTCGGCAGTACCCTCATCCATCAT
GGCGGAGGGCTACATCAACAACAACAACAACAACAACAACAACAACGACA
ACGACGACAATGGAGACGACGACGACAAACCCACCGCCACGACCACCATC
AGCCGCTGCGCATGTTTTTGTCCCCCGCCCCGTCTTGTCTCGGACGACCG
TTACGGCTGGGAGATTCCCCATTATTCTTAGCGGGCGCCCCCGCCACGAC
AATAACGACAGCAGCAGCTGTGCTTGTTCCGCCCTCTGTGAGGATGCGCC
CGACGATGCAGGCGCCGCTGTCGGGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:94285..100213-

>mRNA_P-littoralis_Contig122.21.1 ID=mRNA_P-littoralis_Contig122.21.1|Name=mRNA_P-littoralis_Contig122.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig122:94285..100213- (Pylaiella littoralis U1_48)
ATGAAAGTCTCATCAAGAAGCAGCAAGCGGTTGAACTCGCTCTTGGCGCT
TGTCTCGGTGTCGGCAGTGATGGTGACGCCCGATGTTGCTGCCGCCGCCG
CCGCCCCGGCCGCCGCAACCGTCAGTCCGACTTCTGCGTCCTGCTCAGCT
GGCACCAACGAGCCTACTATCGCTACGTGCAGGCCGGCGGCAGTGGCATC
ATCAGCATCAGCAGGGACGGCTTTCGCGTCAGCGGTCGGCAGTACCCTCA
TCCATCATGGCGGAGGGCTACATCAACAACAACAACAACAACAACAACAA
CAACGACAACGACGACAATGGAGACGACGACGACAAACCCACCGCCACGA
CCACCATCAGCCGCTGCGCATGTTTTTGTCCCCCGCCCCGTCTTGTCTCG
GACGACCGTTACGGCTGGGAGATTCCCCATTATTCTTAGCGGGCGCCCCC
GCCACGACAATAACGACAGCAGCAGCTGTGCTTGTTCCGCCCTCTGTGAG
GATGCGCCCGACGATGCAGGCGCCGCTGTCGGGCGGT
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