mRNA_P-littoralis_Contig121.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.94.1
Unique NamemRNA_P-littoralis_Contig121.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.94.1 vs. uniprot
Match: D8LEI6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEI6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 8.940e-40
Identity = 135/274 (49.27%), Postives = 151/274 (55.11%), Query Frame = 1 
Query:  472 MEKEEDKRQALLQTMSRTERRKERIAMFPVSGRHGNGNHHGGNAASLSSGRHXXXXXXSAAAMNASLVEDGVLFRPGPTAVRLRTAKQMRLEVARRRHG--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRGLPLSST--RAGSLTVKRRAYSGD--SAXXXXXXXXXXXXXXXXXXXXXXXXXXXAASV----EGRPNMIFTPSLMPVGMESVRTSPMTLGSAGGGRIGSVQWEGRQATALASGGDALGGTGA--AENPPRDTRTV 1257
            MEKEE++RQALL+TMSRTERR  RIA F  S  HGN ++  G A              SAAAM ASLVEDGVLFRPGPTA+RLRTAKQM+L VARRR G  GD                                  +GL  SST    G L VKRRAYS D  +A                XXXXXXXXXXX  SV    EGRPNMIFTPSL PVGMESVR+ PM+LGS G G+  SV+W      +  +  D+LG  G        RDTRTV
Sbjct:    1 MEKEEEERQALLKTMSRTERRHGRIASFKASSGHGNNSNSPGRARQ----------EQSAAAMTASLVEDGVLFRPGPTAIRLRTAKQMQLAVARRRQGCNGDGGSGNEVDTPDYYLTGGE---------------AQGLHPSSTPTAGGPLVVKRRAYSSDGTAATAGRAGGLVLEVNRTGXXXXXXXXXXXXRSVPGAGEGRPNMIFTPSLAPVGMESVRSCPMSLGSGGLGQTSSVRWAPETMESAVAAEDSLGEGGGEGVSQALRDTRTV 249
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BLAST of mRNA_P-littoralis_Contig121.94.1 vs. uniprot
Match: A0A7S2FTG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FTG8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.570e-11
Identity = 60/166 (36.14%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:   52 MKAADYRIPWGRPSEHLLAVKREIIGQQLHVRRIQDARNRSTIDTEPPECAHMPHLITRPKKKKIQEDRQREIAAENYSLMHRLAGIMKEERRDPVQKFA-HLSVEYRQSLRRKKLLKLETENRRLARSIRKQKPFYPIRAMEKEEDKRQALLQTMSRTERRKERI 546
            MKA DY +PWGRPSE ++A KRE    +L+ +R+ + +  S ID   P  A   HL  R KKK++  DRQ  I  EN  L+ ++A I++ +           L+    + +RRK+L K+  ENR +A  IR+Q P Y    M  +        + +SRT +R +RI
Sbjct:    1 MKAVDYCVPWGRPSEDVIARKRERQSARLNKQRLNNIK--SMIDCSAP--AVPKHLANRQKKKQLAVDRQHVIDIENAKLVEKMARILRGQGPKVCGDAPFRLTGSKNEPIRRKELEKISNENRAIAARIRQQAPNYDHFKMADDYHVSTGYAKNISRTFKRDQRI 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEI6_ECTSI8.940e-4049.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FTG8_9STRA4.570e-1136.14Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:382724..385787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1260
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-21_004520.1
Cds size1209
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.2540815-CDS-P-littoralis_Contig121:382723..3835751680789522.2540815-CDS-P-littoralis_Contig121:382723..383575Pylaiella littoralis U1_48CDSP-littoralis_Contig121 382724..383575 -
1680789522.2640572-CDS-P-littoralis_Contig121:383991..3841561680789522.2640572-CDS-P-littoralis_Contig121:383991..384156Pylaiella littoralis U1_48CDSP-littoralis_Contig121 383992..384156 -
1680789522.273071-CDS-P-littoralis_Contig121:385544..3857361680789522.273071-CDS-P-littoralis_Contig121:385544..385736Pylaiella littoralis U1_48CDSP-littoralis_Contig121 385545..385736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.281853-UTR-P-littoralis_Contig121:385736..3857871680789522.281853-UTR-P-littoralis_Contig121:385736..385787Pylaiella littoralis U1_48UTRP-littoralis_Contig121 385737..385787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.94.1prot_P-littoralis_Contig121.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 382724..385736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.94.1

>prot_P-littoralis_Contig121.94.1 ID=prot_P-littoralis_Contig121.94.1|Name=mRNA_P-littoralis_Contig121.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=403bp
MKAADYRIPWGRPSEHLLAVKREIIGQQLHVRRIQDARNRSTIDTEPPEC
AHMPHLITRPKKKKIQEDRQREIAAENYSLMHRLAGIMKEERRDPVQKFA
HLSVEYRQSLRRKKLLKLETENRRLARSIRKQKPFYPIRAMEKEEDKRQA
LLQTMSRTERRKERIAMFPVSGRHGNGNHHGGNAASLSSGRHEQHQQQSA
AAMNASLVEDGVLFRPGPTAVRLRTAKQMRLEVARRRHGGDSGGDDGEDD
QEFFSAQSGGEGGGEGGGGEGGGRTRGLPLSSTRAGSLTVKRRAYSGDSA
AAATRGGGGVVLEVNRTGGGGGGGRRRAASVEGRPNMIFTPSLMPVGMES
VRTSPMTLGSAGGGRIGSVQWEGRQATALASGGDALGGTGAAENPPRDTR
TV*
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mRNA from alignment at P-littoralis_Contig121:382724..385787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.94.1 ID=mRNA_P-littoralis_Contig121.94.1|Name=mRNA_P-littoralis_Contig121.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3064bp|location=Sequence derived from alignment at P-littoralis_Contig121:382724..385787- (Pylaiella littoralis U1_48)
CTAATAGCAGTGCAGTGAAAAGGGTGGTAAGCGTCGCGGCACGCGCACGC
CATGAAAGCAGCCGACTACCGTATACCATGGGGCCGTCCGAGCGAGCACC
TCCTGGCGGTGAAACGGGAGATCATCGGGCAGCAGCTGCATGTACGACGC
ATTCAAGACGCTCGGAATCGGAGCACTATTGACACCGAACCCCCTGAGTG
CGCTCACATGCCACACCTGATCACGAGGCCCAAGAAGAAAAAGGTGTGCG
ACTAGGCAGTAAACAGCTCTGTCACTGCTTCCTGCCGCTGCGCGGCGGCC
GTTGGTGAACATTCTGAGGGTTTGCATTTATTTACAGCGGTGTGTGTTGT
CATCCCATATTCTCTGGCACACTAGTCTGCACCCTGCGGTTTAAACTACA
GGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGA
GTTACCTCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGA
GCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTA
CGAACAGCATAGCCGCTTTCAAAGCAGCAAAGGAACACATTCACCGGGAA
CCGAACCCCCGTTCCTCTGCATCTAGTATTGAGGTGTAATGGTGTGAGTT
ACAGTATGTGTACTGCTGTACACTACCATTGTTTTTCTATCGTTATTGCA
CTTGAGACATACCGTCATATGAAATGGAGACGATGTAGTAGACTGTACCA
CTGCGATATACAGTAATAATGCTTTCCAGTAGACTACAGTATTCCCTTCT
TTGCTGTGGCTTCACGCAGCGCACGCGTGTCAGCCCTTTTGCACTCGAGA
CTGCTCGTCGCCGTGGTAGCGTACATGCCCAACCATACAAGACGGAATGT
GTTTTGGATGCCCTAGCCCGTAGAATGGGCGCGGTGCTACGTAGCCATCT
TTGACAGCTCCCAGTCGATGCAAAACAGCAGCAATCCATAATGTACTGTG
TGCGTGGTTGCGTGTGTCAAAATGTACCCGATGAGTGAGTGCCGTTGAAT
ACACGTACAACCTGCGCGCCGGAAATTACTGGAGCTTCACGCACACGAAA
CACCACACGTCGTAATATCTTAAGAGAGCCAGCCGCTGCTTGCACCACCG
CTTCTTGTACCAAAGCTTCTGAAGCGCTGATAAATTCAAAGCTTTTGGTG
ACGCCCTTGCGATAAAATCCGAAGGGAAGCTTGTTCTGAAACAAACCGAC
CCCCTCCCCCTCCCTCTCTCTCCCCCTCCCTCTCTCTCCCCCTCCCCTTA
CTTTTATCCTTGTATTGGGGGGTGATCATATTGCACCAAGGAAGTACAGC
GTAATTTCATTCACCGACTATGGCGTGTGCTTCTCGTGCAGGGGCCCAAC
TTAGCACACTGCTGTTCCATGTCGTTGTAGAGTTTTTCACCCTCCCTGTG
GTTCATTCGCAATCCAGAAACACAAGAAAATAAACAACGCGAGGACAGCA
CATTTGTGTTGGTTTCGTTCAACACGCCAAGCTGTCCTGTCTTCCCGGTT
GGAGTTACATGTCCATTTGTTGGTCGGGGTCTCCAAGACAAAAGGGGCAA
AATGGTTCTCCTCGCTTCAATCCGACGACAGATTCAAGAAGATCGGCAGC
GGGAGATTGCCGCCGAGAACTATTCCCTCATGCACCGCCTGGCGGGCATC
ATGAAGGAGGAGCGGCGGGACCCCGTCCAAAAGTTTGCGCACCTCTCCGT
CGAGTATAGACAGAGCTTACGGAGAAAAAAACTCCTCAAGCTTGAGGTGA
GCAGGTCCATCTGTCGAATGATGGATTGATGAAAACTTTGGGTCAATCTG
GCTGTATGTATAAACGTACGTGTGGTATGTGTATTCTCTCCCTTTACTTG
CAGCCTGCGTACGGCTCCCGTGCCGCTCCGGCACCAGGGACGAACGTTTT
TTTCTGCCTGGTCGGTTGGCGGGTTCCGCGAATAATATTGGTTGATCTTA
AGCTCGCGAGGTCTTTGTGCGTTGTCTTATGGCACCACTTTCCTTCGTGG
GTGAGGTTACACCGTCCTCTCTGGATCCCCGCCTGATGTTGATGGTAGCA
AGGAGTGCATTCGCGCGTGCGAGTGTGGTGTGTGTTTTTTTTCACGCGGC
TACAGTGGATGTATCATATGTATGCATGCGCGGTTGATTCTCCGGAACAT
ACATACACGCAGACGGAGAACCGAAGGCTGGCGCGCTCGATCAGAAAGCA
GAAGCCCTTCTACCCCATTCGGGCGATGGAGAAGGAGGAGGACAAGCGGC
AAGCGCTCCTACAGACCATGTCACGCACGGAACGTCGCAAGGAGAGAATC
GCCATGTTCCCTGTCTCTGGTCGCCATGGCAACGGCAATCACCACGGAGG
AAACGCCGCATCACTTTCGTCGGGGCGGCACGAGCAGCATCAACAGCAAT
CCGCCGCTGCGATGAACGCGAGCCTAGTAGAGGATGGCGTTCTGTTTCGG
CCGGGGCCAACCGCAGTCAGGCTTCGAACCGCGAAGCAGATGCGGCTAGA
AGTCGCCCGGCGGAGACACGGCGGCGACAGCGGCGGCGACGACGGCGAGG
ACGACCAGGAGTTTTTCTCTGCGCAAAGCGGTGGGGAAGGAGGAGGAGAA
GGAGGAGGAGGAGAAGGAGGGGGAAGAACTAGAGGGTTACCACTCTCGTC
GACAAGGGCGGGTTCTCTCACGGTAAAGAGGAGAGCGTACAGTGGTGACA
GCGCGGCGGCAGCTACGCGAGGAGGGGGGGGGGTGGTGCTCGAGGTGAAC
CGCACCGGCGGCGGTGGTGGTGGGGGACGCCGGCGAGCAGCGAGCGTGGA
GGGTCGGCCTAACATGATCTTCACGCCGTCTCTGATGCCCGTGGGAATGG
AGTCTGTCCGTACTTCACCCATGACCTTGGGTAGCGCGGGAGGCGGGAGA
ATAGGCTCTGTGCAGTGGGAAGGGCGACAGGCGACCGCATTAGCTTCTGG
CGGAGATGCGTTGGGAGGAACGGGTGCCGCGGAAAACCCCCCACGAGACA
CACGAACGGTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:382724..385787-

>mRNA_P-littoralis_Contig121.94.1 ID=mRNA_P-littoralis_Contig121.94.1|Name=mRNA_P-littoralis_Contig121.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1209bp|location=Sequence derived from alignment at P-littoralis_Contig121:382724..385787- (Pylaiella littoralis U1_48)
ATGAAAGCAGCCGACTACCGTATACCATGGGGCCGTCCGAGCGAGCACCT
CCTGGCGGTGAAACGGGAGATCATCGGGCAGCAGCTGCATGTACGACGCA
TTCAAGACGCTCGGAATCGGAGCACTATTGACACCGAACCCCCTGAGTGC
GCTCACATGCCACACCTGATCACGAGGCCCAAGAAGAAAAAGATTCAAGA
AGATCGGCAGCGGGAGATTGCCGCCGAGAACTATTCCCTCATGCACCGCC
TGGCGGGCATCATGAAGGAGGAGCGGCGGGACCCCGTCCAAAAGTTTGCG
CACCTCTCCGTCGAGTATAGACAGAGCTTACGGAGAAAAAAACTCCTCAA
GCTTGAGACGGAGAACCGAAGGCTGGCGCGCTCGATCAGAAAGCAGAAGC
CCTTCTACCCCATTCGGGCGATGGAGAAGGAGGAGGACAAGCGGCAAGCG
CTCCTACAGACCATGTCACGCACGGAACGTCGCAAGGAGAGAATCGCCAT
GTTCCCTGTCTCTGGTCGCCATGGCAACGGCAATCACCACGGAGGAAACG
CCGCATCACTTTCGTCGGGGCGGCACGAGCAGCATCAACAGCAATCCGCC
GCTGCGATGAACGCGAGCCTAGTAGAGGATGGCGTTCTGTTTCGGCCGGG
GCCAACCGCAGTCAGGCTTCGAACCGCGAAGCAGATGCGGCTAGAAGTCG
CCCGGCGGAGACACGGCGGCGACAGCGGCGGCGACGACGGCGAGGACGAC
CAGGAGTTTTTCTCTGCGCAAAGCGGTGGGGAAGGAGGAGGAGAAGGAGG
AGGAGGAGAAGGAGGGGGAAGAACTAGAGGGTTACCACTCTCGTCGACAA
GGGCGGGTTCTCTCACGGTAAAGAGGAGAGCGTACAGTGGTGACAGCGCG
GCGGCAGCTACGCGAGGAGGGGGGGGGGTGGTGCTCGAGGTGAACCGCAC
CGGCGGCGGTGGTGGTGGGGGACGCCGGCGAGCAGCGAGCGTGGAGGGTC
GGCCTAACATGATCTTCACGCCGTCTCTGATGCCCGTGGGAATGGAGTCT
GTCCGTACTTCACCCATGACCTTGGGTAGCGCGGGAGGCGGGAGAATAGG
CTCTGTGCAGTGGGAAGGGCGACAGGCGACCGCATTAGCTTCTGGCGGAG
ATGCGTTGGGAGGAACGGGTGCCGCGGAAAACCCCCCACGAGACACACGA
ACGGTGTAG
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