mRNA_P-littoralis_Contig121.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.86.1
Unique NamemRNA_P-littoralis_Contig121.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: D8LEI8_ECTSI (Ubiquinol cytochrome c reductase subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.720e-31
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    4 DDDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            DDDEPVDPLT IR TC  TT C++ M+EYKAC+ERVTSKGFGTCEPWFFD ++CVDKCAAPKIMKATK
Sbjct:    2 DDDEPVDPLTGIRATCGETTACSATMSEYKACVERVTSKGFGTCEPWFFDYISCVDKCAAPKIMKATK 69
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A6H5K2B5_9PHAE (UCR_hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.830e-30
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    4 DDDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            DD+EPVDPLT IR TC  TT CA+AM+EYKAC+ERV SKGFGTCEPWFFD ++CVDKCAAPKIMK TK
Sbjct:    2 DDEEPVDPLTKIRATCAETTACAAAMSEYKACVERVISKGFGTCEPWFFDYISCVDKCAAPKIMKVTK 69
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A7S3LAV8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAV8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.880e-12
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 DDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            D+EPVDP+  +R+ C  T P    +  Y AC++R+T K  G CE WF ++++C DKC APKI K TK
Sbjct:   40 DEEPVDPIADVRKECYKTCPKQQKL--YDACVQRITEKKEGDCEAWFIELLSCADKCVAPKIFKLTK 104
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: F0XZK5_AURAN (UCR_hinge domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK5_AURAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.140e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 DDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            D+EPV PL A+R+ C     C  A   Y +C++R+ +KG G CEP++FD + C+DKCA P IM+  K
Sbjct:    3 DEEPVCPLPAMRKACEP--KCTDAYKAYLSCVDRIEAKGGGDCEPYYFDWLKCLDKCAMPHIMQKLK 67
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A067CW65_SAPPC (UCR_hinge domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CW65_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 5.820e-8
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   10 DEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            ++PVD    IR+ C +   CA  + EY AC++RV  KG   C+  +FD++ CVDKCAAP+I K  K
Sbjct:    4 EDPVDIYPEIRKGCES--KCAPVVKEYNACLDRVAGKG--GCDGQYFDLLKCVDKCAAPQIFKHLK 65
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A1W0A993_9STRA (Cytochrome b-c1 complex subunit 6 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A993_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-7
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   10 DEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            ++PVD    IR+ C +   C +A+ EY  C++RV  KG   C+  +FD++ CVDKCAAP+I K  K
Sbjct:    5 EDPVDVYPEIRKGCES--KCTNAVKEYNNCLDRVQGKG--GCDGQYFDVLKCVDKCAAPQIFKHLK 66
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A1V9ZR46_9STRA (Cytochrome b-c1 complex subunit 6 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR46_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   16 PVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            PVD    IR+ C +   C + + EY+ C++RV  KG   C+  +FD++ C+DKCAAP+I K  K
Sbjct:    5 PVDVYPEIRKGCES--KCVTVVKEYQNCLDRVAGKG--GCDGQYFDLLKCIDKCAAPQIFKHLK 64
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A0Q3IT18_BRADI (UCR_hinge domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3IT18_BRADI)

HSP 1 Score: 55.5 bits (132), Expect = 3.470e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:    7 DDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGT--CEPWFFDIVTCVDKCAAPKIMKATK 207
            D+EPVDP   + E C+    C   + EY+ C++RV S   G   C   +FD ++C+DKC APK+ +  K
Sbjct:   37 DEEPVDPKKYLEERCKP--QCVKPLYEYERCVKRVESDDTGHKHCTGQYFDYLSCIDKCVAPKLFEKLK 103
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BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: A0A6P5TDT7_PRUAV (Cytochrome b-c1 complex subunit 6 n=8 Tax=Amygdaloideae TaxID=171637 RepID=A0A6P5TDT7_PRUAV)

HSP 1 Score: 52.0 bits (123), Expect = 2.500e-5
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    7 DDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTSKGFGT--CEPWFFDIVTCVDKCAAPKIMKATK 207
            D+E VD    + E+C+    C   + EY+AC++RV     G   C   +FD ++CVDKC APK+  A K
Sbjct:    3 DEELVDQKKYLEESCQP--KCVKPLIEYQACVKRVEGDNNGEKHCTGQYFDYISCVDKCVAPKLFGALK 69
[Close]
BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Match: UPI001AD910EF (cytochrome b-c1 complex subunit 6-1, mitochondrial-like n=2 Tax=Rosoideae TaxID=171638 RepID=UPI001AD910EF)

HSP 1 Score: 51.6 bits (122), Expect = 3.420e-5
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    7 DDEPVDPLTAIRETCRATTPCASAMTEYKACIERVTS--KGFGTCEPWFFDIVTCVDKCAAPKIMKATK 207
            D+E  DP   + ++C+    C   + EY+AC++R+     G+  C   +FD ++CVDKC APK+    K
Sbjct:    3 DEEITDPKKYLEDSCQP--KCVKPLIEYQACVKRIEGDDSGYKHCTGQYFDYISCVDKCVAPKLFGKLK 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LEI8_ECTSI1.720e-3180.88Ubiquinol cytochrome c reductase subunit 6 n=1 Tax... [more]
A0A6H5K2B5_9PHAE1.830e-3079.41UCR_hinge domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3LAV8_9STRA1.880e-1247.76Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
F0XZK5_AURAN3.140e-1146.27UCR_hinge domain-containing protein n=1 Tax=Aureoc... [more]
A0A067CW65_SAPPC5.820e-845.45UCR_hinge domain-containing protein n=2 Tax=Saprol... [more]
A0A1W0A993_9STRA1.530e-743.94Cytochrome b-c1 complex subunit 6 n=1 Tax=Thrausto... [more]
A0A1V9ZR46_9STRA1.310e-642.19Cytochrome b-c1 complex subunit 6 n=1 Tax=Achlya h... [more]
A0A0Q3IT18_BRADI3.470e-639.13UCR_hinge domain-containing protein n=1 Tax=Brachy... [more]
A0A6P5TDT7_PRUAV2.500e-539.13Cytochrome b-c1 complex subunit 6 n=8 Tax=Amygdalo... [more]
UPI001AD910EF3.420e-534.78cytochrome b-c1 complex subunit 6-1, mitochondrial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:362384..364409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000019713
PFAMsUCR_hinge
Model size1118
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue2.63e-10
EggNOG OGsKOG4763@1|root,KOG4763@2759|Eukaryota,1MHVJ@121069|Pythiales
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit 6
Ec32 orthologEc-21_004500.1
DescriptionSource PGD
Cds size132
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789521.9773972-UTR-P-littoralis_Contig121:362383..3624611680789521.9773972-UTR-P-littoralis_Contig121:362383..362461Pylaiella littoralis U1_48UTRP-littoralis_Contig121 362384..362461 +
1680789522.0226347-UTR-P-littoralis_Contig121:363501..3644091680789522.0226347-UTR-P-littoralis_Contig121:363501..364409Pylaiella littoralis U1_48UTRP-littoralis_Contig121 363502..364409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789521.9901066-CDS-P-littoralis_Contig121:362461..3624761680789521.9901066-CDS-P-littoralis_Contig121:362461..362476Pylaiella littoralis U1_48CDSP-littoralis_Contig121 362462..362476 +
1680789521.9990733-CDS-P-littoralis_Contig121:362940..3630241680789521.9990733-CDS-P-littoralis_Contig121:362940..363024Pylaiella littoralis U1_48CDSP-littoralis_Contig121 362941..363024 +
1680789522.0082974-CDS-P-littoralis_Contig121:363468..3635011680789522.0082974-CDS-P-littoralis_Contig121:363468..363501Pylaiella littoralis U1_48CDSP-littoralis_Contig121 363469..363501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.86.1prot_P-littoralis_Contig121.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 362462..363501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.86.1

>prot_P-littoralis_Contig121.86.1 ID=prot_P-littoralis_Contig121.86.1|Name=mRNA_P-littoralis_Contig121.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
MTEYKACIERVTSKGFGTCEPWFFDIVTCVDKCAAPKIMKATK*
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mRNA from alignment at P-littoralis_Contig121:362384..364409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.86.1 ID=mRNA_P-littoralis_Contig121.86.1|Name=mRNA_P-littoralis_Contig121.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2026bp|location=Sequence derived from alignment at P-littoralis_Contig121:362384..364409+ (Pylaiella littoralis U1_48)
CAGGATGACGACGAGCCGGTAGACCCCTTGACAGCGATCCGCGAAACGTG
CCGCGCGACCACACCTTGCGCGTCGGCCATGACCGAGTACAAGGTGCGCG
CGGTGCATGACGCACGTACACTCTGTGTCGAGTTTTCGTGGGGGTCTCCA
CTTCTCGTTTTTTTTTTTTTGTCAAATTGTGCTTTGAAATATTTGTTGAT
TGTTCTTTCAGGGTGTGTTGTTGTGTTGCTCTGTTTGTCTGTCCATGCAT
CCCAGGCTCAGTCCCACCGGCCCCCTTTTCCGTTTGTTATTTGTGGCGCG
CGATGCATGCGTTTCATGCGTGGGAAGGAGGGGTGGGGGTAAGTAGCTGG
GAGGCGGGAGGCGAGACGGTGTTGATGCCGAATTTGTCAGTGCAAGGAGA
TTAAATCGATGCCTCGATGGCTCCCTCACTCGTTGTCTCCGACTCAACAT
CTATAGCGATGAGAACCGTGCCAATGGGCTCTATAGCACCGTTTTTTGTT
GTGCACCGCGCGTTTTCCCACTGTGTATGTCTGCCGTTCCGTCCTCGGCT
ATAACAGGCTTGCATTGAACGGGTGACCAGCAAGGGGTTCGGCACGTGCG
AGCCATGGTTCTTCGACATCGTTACCTGTGTGGACAAATGCGTGAGTGGC
CTGATCTGCCTGCACGATTATTCCGCCGTTGAATCAAGGCGCTAGATTAT
TATTGGTTCTGTCGGAAATAATGTGACGGTTTTGATTTTTTTTTGTGCCA
TAGTTGTGGAGTTTCGTCGTTGGAGACAGAGATCGGCAGAGGGAGGGAGG
CAGAGAGAGAGCGAGAGAGAGGAGATCCAAAGGGTGCTGAGACATAAACA
GCCGCACACACTCAAGACAGACTTATACTCGGACGAGGACAACGATTTTT
CCGCCGGCACCAACTCTGCATGACATGATCCGAAAGAATCACCACCACTT
CTGCGATCATCGTCAATATCTGATCTTCATCATCATCAATATGGCCCACC
CATTCGCCCACCCTAACCCTTTGCCTCCGTCTTCGACGCCGGTGTCACCC
CCCCCCCCTCCCCCTCCCCTCCCCCCCTCCGCCAGGCCGCTCCGAAAATT
ATGAAAGCTACAAAGTGACCCAGACTGACAAGAAGCACCTTTCCCCCCCC
CAGCACGACTAAGAGGAGACGGGAGGGGGGTCGGTTGTCAAGAGGGACAC
GCTTTAGTTTTAGGGTTCGCGGCTGTTGGTATTTTATGTCGACGTTGTTT
AAGGGGGCCGTGTTTCTGCAGCTAGTGAGTGCATGCAGGAGCCACAACGT
CGCGCCGCAAGCGGGATTGGGCCACGGGGAAGGGCGTTTTAGTCCCCAAC
ACTTGAAGGTCTGACTCTTTGCTTGCCCTTCGCGCGCCCGTGGATGATCA
ATACTGCTGTAGCACGATTTTGGCTTGGAACGGCGCTTTTTGTTTTCGGA
GAGCTAAAAGCAGATGGATTGGATACACCAACGCGGGATGGGATGGTCTG
TTATGGTTTGAGCCTCCTCTGGAGCGCGAAAGAAGAAAATGGCGTGGTGA
ATCGTGTTCGCGGGCATCGAGGGCGCGCGAGCTTCGGCCGCGTACCTGCA
CCACCACAAGACGAGAGAGTTTGTGTGATGAAAGGGTCGTTTGTGGATCC
TTAATGGTTGAGTCGGTTCGCGTTTAGCTTTTCGTTATCTGTCTACCCTG
CCCTGTTGAGATGCTGAGAGTCTGCGCTTCTTGTCGCCGTTGAGGACGAG
CGAACTCGTATTCGGCGTTTTTACTGCTGTATTCGTATACTGCAAGTAGC
AGTGAAGATCCCGGCGACTGCCGCATGCTAATTCAATGAACCCATCAACC
GACCAACGCGTACCTGGTACATAAATGCACTCGTTTTATATATATACATA
TGTAATATTTGCTGAGATACACGCGCAGTTTACAGGACTGGGAAACAACG
AAAACACTTGTTCGTACTTGAGTTCTCGCTCTCTGTAGTTTGGTGCACGA
GAGAACCTATTCGGCACGACTCTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:362384..364409+

>mRNA_P-littoralis_Contig121.86.1 ID=mRNA_P-littoralis_Contig121.86.1|Name=mRNA_P-littoralis_Contig121.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig121:362384..364409+ (Pylaiella littoralis U1_48)
ATGACCGAGTACAAGGCTTGCATTGAACGGGTGACCAGCAAGGGGTTCGG
CACGTGCGAGCCATGGTTCTTCGACATCGTTACCTGTGTGGACAAATGCG
CCGCTCCGAAAATTATGAAAGCTACAAAGTGA
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